RLG00000016899

GDP-mannose 4,6 dehydratase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
11076998 .. 11078358
1361 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016899

Sequence Viewer

Length: 1143 bp
ATGGCGTCCCAGAACGACACCGCCACCGCCAGATCCGGATCCGGATCCAACGGCGAGGAGCGTCGCAAGGTGGCGCTGATAACCGGAATCACCGGCCAGGACGGCTCCTACCTGACGGAGTTCCTCCTCAACAAAGGCTACGACGTCCACGGCCTGATCCGACGCTCCTCCAACTTCAACACCCAGCGGATCAACCACATCTACATCGACCCCCACAACGCCCACAAGGCCCGCATGAAGCTCCACTACGCCGACCTCACCGACGCCTCCTCCCTCCGCCGCTGGCTCGACACCATCGCCCCCGACGAGGTCTACAACCTCGCCGCCCAGTCCCACGTCGCCGTTTCCTTCGAGATCCCTGACTACACCGCCGACGTCGTCGCCACCGGCGCCCTCCGCCTCCTCGAAGCCGTCCGCAACCACGTCGACGCCACCGGAAGGACCAATGTCAAGTACTACCAGGCCGGGTCGTCCGAGATGTTCGGGGCCACCCCGCCTCCGCAGTCGGAGACGACACCGTTTCATCCCCGATCCCCTTACGCGGCCTCGAAATGCGCGGCGCACTGGTACACCGTGAACTACCGCGAGGCCTACGGGCTCTACGCGTGCAATGGGATTCTGTTTAACCACGAATCGCCGAGGAGGGGAGAGAATTTCGTGACCCGGAAGATCACTCGGGCCGTGGGCCGGATCAAAATCGGGCTGCAGAGCAAGCTGTTCTTGGGGAATTTGAATGCTTCAAGGGATTGGGGATTTGCTGGTGACTATGTGGAGGCAATGTGGATGATGCTACAGCAGGAGAAGCCTGATGACTATGTTGTGGCCACCGAGGAGTCGCACACGGTGGAGGAGTTCTTGGAGGTGGCGTTTGGGTATGTGGGGATGAACTGGAAGGATCATGTTGTGCTTGACAAGAGGTACTTGAGGCCGACGGAGGTTGACAATCTGAAAGGGGATGCAAGCAAGGCGAAGAAGATTCTCGGGTGGAAGCCCAAAGTTGGGTTTCAGCAGCTGGTGAAGATGATGGTGGATGAAGATGTCGAATTGGCAAAGAGGGAAAAGTTCATGTTCTGGATAGTGAAGCTCACTGGGGATACACCGGATCAAGATCCCTTTCATTTTACAATAATTTTAGTTCAGTAA

Protein Analysis

381

Amino Acids

42.97

Weight (kDa)

6.9

Isoelectric Point (pI)

41.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 25 - 275 2.8e-73 NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd PF16363 26 - 342 4.7e-140 GDP-mannose 4,6 dehydratase
RmlD_sub_bind PF04321 26 - 188 1e-05 RmlD substrate binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013261)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 147, 378
AccB1I GGYRCC 1 cut(s) 389
AccI GTMKAC 2 cut(s) 312, 426
AccII CGCG 4 cut(s) 542, 557, 585, 605
AccIII TCCGGA 2 cut(s) 35, 41
AcoI YGGCCR 2 cut(s) 94, 822
AcsI RAATTY 2 cut(s) 652, 727
AcyI GRCGYC 6 cut(s) 5, 144, 264, 375, 390, 429
AdeI CACNNNGTG 1 cut(s) 844
AfaI GTAC 3 cut(s) 455, 569, 920
AfiI CCNNNNNNNGG 7 cut(s) 307, 438, 541, 644, 687, 998, 999
AflIII ACRYGT 1 cut(s) 603
AgsI TTSAA 3 cut(s) 178, 733, 741
AjiI CACGTC 2 cut(s) 337, 424
AjnI CCWGG 2 cut(s) 96, 459
AluBI AGCT 4 cut(s) 241, 715, 1012, 1084
AluI AGCT 4 cut(s) 241, 715, 1012, 1084
Alw26I GTCTC 1 cut(s) 503
AlwNI CAGNNNCTG 1 cut(s) 1012
Ama87I CYCGRG 2 cut(s) 675, 980
Aor13HI TCCGGA 2 cut(s) 35, 41
ApeKI GCWGC 2 cut(s) 703, 1009
ApoI RAATTY 2 cut(s) 652, 727
AspLEI GCGC 4 cut(s) 76, 392, 557, 562
AspS9I GGNCC 5 cut(s) 229, 441, 486, 678, 685
AsuC2I CCSGG 2 cut(s) 466, 664
AsuHPI GGTGA 4 cut(s) 82, 250, 773, 1027
AvaI CYCGRG 2 cut(s) 675, 980
AvaII GGWCC 1 cut(s) 441
BalI TGGCCA 1 cut(s) 824
BamHI GGATCC 2 cut(s) 38, 44
BanI GGYRCC 1 cut(s) 389
BanII GRGCYC 1 cut(s) 600
BarI GAAGNNNNNNTAC 2 cut(s) 230, 262
BbvI GCAGC 2 cut(s) 690, 1021
BccI CCATC 2 cut(s) 302, 1018
BceAI ACGGC 6 cut(s) 67, 118, 166, 326, 395, 665
BcgI CGANNNNNNTGC 2 cut(s) 406, 440
BciT130I CCWGG 2 cut(s) 98, 461
BciVI GTATCC 1 cut(s) 1087
BcnI CCSGG 2 cut(s) 466, 664
BcoDI GTCTC 1 cut(s) 503
BfmI CTRYAG 2 cut(s) 704, 791
BfoI RGCGCY 2 cut(s) 77, 393
BfuI GTATCC 1 cut(s) 1087
BglI GCCNNNNNGGC 2 cut(s) 102, 227
BisI GCNGC 6 cut(s) 280, 324, 543, 558, 704, 1010
BlsI GCNGC 6 cut(s) 281, 325, 544, 559, 705, 1011
BmcAI AGTACT 1 cut(s) 455
Bme1390I CCNGG 4 cut(s) 98, 461, 466, 664
Bme18I GGWCC 1 cut(s) 441
BmeT110I CYCGRG 2 cut(s) 675, 980
BmgBI CACGTC 2 cut(s) 337, 424
BmgT120I GGNCC 5 cut(s) 229, 441, 486, 678, 685
BmiI GGNNCC 5 cut(s) 40, 46, 106, 391, 487
BmrFI CCNGG 4 cut(s) 98, 461, 466, 664
BmrI ACTGGG 2 cut(s) 322, 1098
BmsI GCATC 2 cut(s) 777, 946
BmuI ACTGGG 2 cut(s) 322, 1098
BoxI GACNNNNGTC 1 cut(s) 446
BpuEI CTTGAG 1 cut(s) 943
BpuMI CCSGG 2 cut(s) 466, 664
BsaBI GATNNNNATC 4 cut(s) 37, 43, 695, 1107
BsaHI GRCGYC 6 cut(s) 5, 144, 264, 375, 390, 429
BsaJI CCNNGG 4 cut(s) 148, 638, 681, 828
BsaWI WCCGGW 5 cut(s) 35, 41, 83, 434, 1099
BsaXI ACNNNNNCTCC 8 cut(s) 254, 284, 481, 511, 764, 794, 851, 881
Bsc4I CCNNNNNNNGG 7 cut(s) 307, 438, 541, 644, 687, 998, 999
Bse118I RCCGGY 2 cut(s) 92, 386
Bse1I ACTGG 4 cut(s) 328, 569, 893, 1093
Bse3DI GCAATG 2 cut(s) 616, 783
Bse8I GATNNNNATC 4 cut(s) 37, 43, 695, 1107
BseAI TCCGGA 2 cut(s) 35, 41
BseBI CCWGG 2 cut(s) 98, 461
BseDI CCNNGG 4 cut(s) 148, 638, 681, 828
BseGI GGATG 5 cut(s) 523, 789, 888, 961, 1036
BseJI GATNNNNATC 4 cut(s) 37, 43, 695, 1107
BseLI CCNNNNNNNGG 7 cut(s) 307, 438, 541, 644, 687, 998, 999
BseMI GCAATG 2 cut(s) 616, 783
BseNI ACTGG 4 cut(s) 328, 569, 893, 1093
BseRI GAGGAG 8 cut(s) 71, 116, 157, 259, 392, 655, 845, 863
BseXI GCAGC 2 cut(s) 690, 1021
BseYI CCCAGC 1 cut(s) 183
Bsh1236I CGCG 4 cut(s) 542, 557, 585, 605
BshNI GGYRCC 1 cut(s) 389
BsiHKCI CYCGRG 2 cut(s) 675, 980
BslFI GGGAC 1 cut(s) 316
BslI CCNNNNNNNGG 7 cut(s) 307, 438, 541, 644, 687, 998, 999
BsmAI GTCTC 1 cut(s) 503
BsmBI CGTCTC 1 cut(s) 503
BsmFI GGGAC 1 cut(s) 316
BsmI GAATGC 1 cut(s) 739
BsoBI CYCGRG 2 cut(s) 675, 980
Bsp1286I GDGCHC 1 cut(s) 600
Bsp13I TCCGGA 2 cut(s) 35, 41
BspEI TCCGGA 2 cut(s) 35, 41
BspFNI CGCG 4 cut(s) 542, 557, 585, 605
BspLI GGNNCC 5 cut(s) 40, 46, 106, 391, 487
BspMAI CTGCAG 1 cut(s) 708
BspT107I GGYRCC 1 cut(s) 389
BsrDI GCAATG 2 cut(s) 616, 783
BsrFI RCCGGY 2 cut(s) 92, 386
BsrI ACTGG 4 cut(s) 328, 569, 893, 1093
BssAI RCCGGY 2 cut(s) 92, 386
BssECI CCNNGG 4 cut(s) 148, 638, 681, 828
BssNI GRCGYC 6 cut(s) 5, 144, 264, 375, 390, 429
Bst2UI CCWGG 2 cut(s) 98, 461
Bst4CI ACNGT 3 cut(s) 519, 574, 844
BstACI GRCGYC 6 cut(s) 5, 144, 264, 375, 390, 429
BstC8I GCNNGC 5 cut(s) 232, 284, 607, 713, 961
BstDSI CCRYGG 2 cut(s) 148, 681
BstF5I GGATG 5 cut(s) 523, 789, 888, 961, 1036
BstFNI CGCG 4 cut(s) 542, 557, 585, 605
BstH2I RGCGCY 2 cut(s) 77, 393
BstHHI GCGC 4 cut(s) 76, 392, 557, 562
BstMAI GTCTC 1 cut(s) 503
BstMWI GCNNNNNNNGC 7 cut(s) 102, 227, 389, 396, 712, 802, 965
BstNI CCWGG 2 cut(s) 98, 461
BstPAI GACNNNNGTC 1 cut(s) 446
BstSCI CCNGG 4 cut(s) 96, 459, 464, 662
BstSFI CTRYAG 2 cut(s) 704, 791
BstUI CGCG 4 cut(s) 542, 557, 585, 605
BstV1I GCAGC 2 cut(s) 690, 1021
BstX2I RGATCY 5 cut(s) 32, 38, 44, 354, 1108
BstYI RGATCY 5 cut(s) 32, 38, 44, 354, 1108
BsuI GTATCC 1 cut(s) 1087
BtgI CCRYGG 2 cut(s) 148, 681
BtgZI GCGATG 1 cut(s) 280
BtrI CACGTC 2 cut(s) 337, 424
BtsCI GGATG 5 cut(s) 523, 789, 888, 961, 1036
BtsIMutI CAGTG 2 cut(s) 562, 1086
Cac8I GCNNGC 5 cut(s) 232, 284, 607, 713, 961
CaiI CAGNNNCTG 1 cut(s) 1012
CfoI GCGC 4 cut(s) 76, 392, 557, 562
Cfr10I RCCGGY 2 cut(s) 92, 386
Cfr13I GGNCC 5 cut(s) 229, 441, 486, 678, 685
CseI GACGC 4 cut(s) 50, 171, 272, 437
Csp6I GTAC 3 cut(s) 454, 568, 919
CviAII CATG 3 cut(s) 235, 899, 1066
CviQI GTAC 3 cut(s) 454, 568, 919
DinI GGCGCC 1 cut(s) 391
DraIII CACNNNGTG 1 cut(s) 844
EaeI YGGCCR 2 cut(s) 94, 822
EciI GGCGGA 2 cut(s) 266, 386
Eco147I AGGCCT 1 cut(s) 590
Eco24I GRGCYC 1 cut(s) 600
Eco47I GGWCC 1 cut(s) 441
Eco88I CYCGRG 2 cut(s) 675, 980
EcoRII CCWGG 2 cut(s) 96, 459
EcoT38I GRGCYC 1 cut(s) 600
EgeI GGCGCC 1 cut(s) 391
EheI GGCGCC 1 cut(s) 391
Esp3I CGTCTC 1 cut(s) 503
FaeI CATG 3 cut(s) 238, 902, 1069
FaiI YATR 6 cut(s) 236, 768, 816, 876, 900, 1067
FalI AAGNNNNNCTT 4 cut(s) 704, 736, 905, 937
FaqI GGGAC 1 cut(s) 316
FatI CATG 3 cut(s) 234, 898, 1065
FauI CCCGC 2 cut(s) 239, 501
FblI GTMKAC 2 cut(s) 312, 426
Fnu4HI GCNGC 6 cut(s) 280, 324, 543, 558, 704, 1010
FokI GGATG 5 cut(s) 510, 796, 895, 968, 1043
FriOI GRGCYC 1 cut(s) 600
Fsp4HI GCNGC 6 cut(s) 280, 324, 543, 558, 704, 1010
GlaI GCGC 4 cut(s) 75, 391, 556, 561
GluI GCNGC 6 cut(s) 280, 324, 543, 558, 704, 1010
GsaI CCCAGC 1 cut(s) 187
HaeII RGCGCY 2 cut(s) 77, 393
HgaI GACGC 4 cut(s) 50, 171, 272, 437
HhaI GCGC 4 cut(s) 76, 392, 557, 562
Hin1I GRCGYC 6 cut(s) 5, 144, 264, 375, 390, 429
Hin1II CATG 3 cut(s) 238, 902, 1069
Hin6I GCGC 4 cut(s) 74, 390, 555, 560
HinP1I GCGC 4 cut(s) 74, 390, 555, 560
HincII GTYRAC 2 cut(s) 427, 940
HindII GTYRAC 2 cut(s) 427, 940
HinfI GANTC 5 cut(s) 87, 616, 632, 833, 976
HphI GGTGA 4 cut(s) 82, 250, 773, 1027
Hpy166II GTNNAC 6 cut(s) 148, 313, 427, 570, 577, 940
Hpy188I TCNGA 4 cut(s) 161, 475, 508, 948
Hpy188III TCNNGA 6 cut(s) 36, 42, 352, 658, 1072, 1106
Hpy8I GTNNAC 6 cut(s) 148, 313, 427, 570, 577, 940
HpyAV CCTTC 3 cut(s) 358, 432, 886
HpyCH4III ACNGT 3 cut(s) 519, 574, 844
HpyCH4IV ACGT 4 cut(s) 144, 336, 375, 423
HpyCH4V TGCA 3 cut(s) 609, 706, 959
HpyF10VI GCNNNNNNNGC 7 cut(s) 102, 227, 389, 396, 712, 802, 965
HpySE526I ACGT 4 cut(s) 144, 336, 375, 423
Hsp92I GRCGYC 6 cut(s) 5, 144, 264, 375, 390, 429
Hsp92II CATG 3 cut(s) 238, 902, 1069
HspAI GCGC 4 cut(s) 74, 390, 555, 560
KasI GGCGCC 1 cut(s) 389
Kpn2I TCCGGA 2 cut(s) 35, 41
LmnI GCTCC 4 cut(s) 58, 110, 170, 246
Lsp1109I GCAGC 2 cut(s) 690, 1021
LweI GCATC 2 cut(s) 777, 946
MaeII ACGT 4 cut(s) 144, 336, 375, 423
MaeIII GTNAC 2 cut(s) 658, 761
MboII GAAGA 5 cut(s) 679, 982, 985, 1030, 1046
MflI RGATCY 5 cut(s) 32, 38, 44, 354, 1108
MhlI GDGCHC 1 cut(s) 600
MlsI TGGCCA 1 cut(s) 824
MluCI AATT 4 cut(s) 652, 727, 1043, 1128
MluI ACGCGT 1 cut(s) 603
MluNI TGGCCA 1 cut(s) 824
Mly113I GGCGCC 1 cut(s) 390
MlyI GAGTC 1 cut(s) 842
MmeI TCCRAC 4 cut(s) 72, 184, 195, 486
Mox20I TGGCCA 1 cut(s) 824
MroI TCCGGA 2 cut(s) 35, 41
MscI TGGCCA 1 cut(s) 824
MseI TTAA 1 cut(s) 624
Msp20I TGGCCA 1 cut(s) 824
MspA1I CMGCKG 3 cut(s) 187, 282, 1012
MspR9I CCNGG 4 cut(s) 98, 461, 466, 664
MteI GCGCNGCGC 1 cut(s) 558
Mva1269I GAATGC 1 cut(s) 739
MvaI CCWGG 2 cut(s) 98, 461
MvnI CGCG 4 cut(s) 542, 557, 585, 605
MwoI GCNNNNNNNGC 7 cut(s) 102, 227, 389, 396, 712, 802, 965
NarI GGCGCC 1 cut(s) 390
NciI CCSGG 2 cut(s) 466, 664
NlaIII CATG 3 cut(s) 238, 902, 1069
NlaIV GGNNCC 5 cut(s) 40, 46, 106, 391, 487
NmeAIII GCCGAG 1 cut(s) 663
NmuCI GTSAC 2 cut(s) 658, 761
PceI AGGCCT 1 cut(s) 590
PcsI WCGNNNNNNNCGW 1 cut(s) 303
PctI GAATGC 1 cut(s) 739
PfeI GAWTC 4 cut(s) 87, 616, 632, 976
PflFI GACNNNGTC 2 cut(s) 308, 377
PkrI GCNGC 6 cut(s) 281, 325, 544, 559, 705, 1011
PleI GAGTC 1 cut(s) 841
PluTI GGCGCC 1 cut(s) 393
PpsI GAGTC 1 cut(s) 841
PshAI GACNNNNGTC 1 cut(s) 446
Psp6I CCWGG 2 cut(s) 96, 459
PspFI CCCAGC 1 cut(s) 183
PspGI CCWGG 2 cut(s) 96, 459
PspN4I GGNNCC 5 cut(s) 40, 46, 106, 391, 487
PspPI GGNCC 5 cut(s) 229, 441, 486, 678, 685
PstI CTGCAG 1 cut(s) 708
PstNI CAGNNNCTG 1 cut(s) 1012
PsuI RGATCY 5 cut(s) 32, 38, 44, 354, 1108
PsyI GACNNNGTC 2 cut(s) 308, 377
PvuII CAGCTG 1 cut(s) 1012
RsaI GTAC 3 cut(s) 455, 569, 920
RsaNI GTAC 3 cut(s) 454, 568, 919
SalI GTCGAC 1 cut(s) 425
SaqAI TTAA 1 cut(s) 624
SatI GCNGC 6 cut(s) 280, 324, 543, 558, 704, 1010
Sau96I GGNCC 5 cut(s) 229, 441, 486, 678, 685
ScaI AGTACT 1 cut(s) 455
SchI GAGTC 1 cut(s) 842
ScrFI CCNGG 4 cut(s) 98, 461, 466, 664
SduI GDGCHC 1 cut(s) 600
SfaNI GCATC 2 cut(s) 777, 946
SfcI CTRYAG 2 cut(s) 704, 791
SfoI GGCGCC 1 cut(s) 391
SgrAI CRCCGGYG 1 cut(s) 386
SgrDI CGTCGACG 1 cut(s) 425
SinI GGWCC 1 cut(s) 441
SmlI CTYRAG 1 cut(s) 922
SmoI CTYRAG 1 cut(s) 922
Sse9I AATT 4 cut(s) 652, 727, 1043, 1128
SseBI AGGCCT 1 cut(s) 590
SspDI GGCGCC 1 cut(s) 389
StuI AGGCCT 1 cut(s) 590
StyD4I CCNGG 4 cut(s) 96, 459, 464, 662
TaaI ACNGT 3 cut(s) 519, 574, 844
TaiI ACGT 4 cut(s) 147, 339, 378, 426
TaqI TCGA 7 cut(s) 207, 288, 351, 405, 426, 548, 1041
TasI AATT 4 cut(s) 652, 727, 1043, 1128
TatI WGTACW 1 cut(s) 453
TauI GCSGC 4 cut(s) 282, 326, 545, 560
TfiI GAWTC 4 cut(s) 87, 616, 632, 976
Tru1I TTAA 1 cut(s) 624
Tru9I TTAA 1 cut(s) 624
TscAI CASTG 2 cut(s) 569, 1093
TseFI GTSAC 2 cut(s) 658, 761
TseI GCWGC 2 cut(s) 703, 1009
Tsp45I GTSAC 2 cut(s) 658, 761
TspDTI ATGAA 6 cut(s) 251, 512, 899, 1047, 1054, 1106
TspGWI ACGGA 2 cut(s) 131, 947
TspRI CASTG 2 cut(s) 569, 1093
Tth111I GACNNNGTC 2 cut(s) 308, 377
VpaK11BI GGWCC 1 cut(s) 441
XapI RAATTY 2 cut(s) 652, 727
XmiI GTMKAC 2 cut(s) 312, 426
ZraI GACGTC 2 cut(s) 145, 376
ZrmI AGTACT 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.