Rorug02G0081700

negative regulation of mRNA metabolic process

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
6582749 .. 6587474
4726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0081700.1

Sequence Viewer

Length: 1536 bp
ATGGTGATGTCAGATTCGCCGGAGGGCGAAACCGTCACCGTCGCCGCCGCGAGTCCCGTGGCCGAGTCGGATCTCCGGCGGAGGCCGATCGCGAGAGGCGAGGTGGAGGATTCGGAATCCAAGGACGGCAATTTGGTGGCGGAGGAGACCTCCAGTGAGGACTCGAAGATCACCGGGGATGAGAATAAGGTGGAGAATGAAGCTTCTGTGGAGGAGAAGAAGCAAAGCGGTGAGGATCGAGGCGGTTCCGGTGCGAAATTCGCTTACCGGCCTTCTGAAATTCCGGCTCACCGGAGAATTAAGGAGAGTCCGCTTAGCTCCGATGCCATTTTCAGACAGAGCCATGCAGGTCTCTTCAACCTTTGTATAGTAGTGCTTGTTGCTGTAAACAGCAGGCTCATCATCGAGAATTTAATGAAGTATGGTTGGTTGATTAAAACCGGTTTTTGGTTTAGTTCAAGATCATTGCGAGATTGGCCCCTTCTTATGTGTTGCCTTACTCTTCCTATTTTCCCACTTGCCGCCTTTCTAGTTGAGAAGTTAGCACTACAAAAGCGTATAAACGAATCTGCTGTTATTTCTCTTCATATTGCCATTACTACAACTTCACTATTGTATCCGGTTCTTGTAATTCTCAGATGTGACTCTGCTGTTTTATCTGGCGTTACATTGATGCTCTTTGCTTGCATTGTGTGGTTAAAACTCGTCTCCTATGTGCATACAAATTATGATATGAGAAAGGGTACCATATCGGTTGATAAGGTGGATGTTGTGCCTGGTTCTCCAAGTGGTGATTGCTCTCATGAACTTAGCTTGAAAAGTTTGACATACTTCATGGTTGCTCCAACGTTATGTTACCAGACTAGTTACCCTCGTACCCCATGTGTTCGAAAGAGTTGGGTATGCCGTCAATTTGTCAAGTTGATCATTTTTACCGGAGTGATGGGATTTATGATAGAACAATACATCAATCCTATTATCAAGAATTCACAACATCCTTTGAAGGGGAACCTTTTATATGCAATAGAGAGGGTTTTGAAGCTTTCTCTTCCATGTTTATATGTGTGGCTATGCATGTTCTATTGCTTTTTCCACCTCTGGTTAAATATTCTTGCTGAGCTGCTGTGTTTTGGGGATCGAGAGTTCTATAAAGATTGGTGGAATGCAAAAACAGTTGAGGAGTATTGGAAACTGTGGAATATGCCTGTGCATAAGTGGATGGTTCGCCATATCTACTTTCCTTGCTTGCGACATGGAATACCAAAGGGAGTTGCCGTCATAATTGCCTTCCTAGTATCTGCTATATTTCACGAGCTATGCATTGCTGTTCCTTGTCACATATTCAAGGGGTGGGCGTTTGCGGGAATTATGTTCCAGGTACCACTGGTCTTGATCACAAATTACCTGTGGGATAAATTCCAGAACTCGATGGTTGGAAATATGATCTTCTGGTTCAGTTTTTGCATCCTCGGTCAACCCATGACTGTGCTTCTATATTACCATGACTTGATGAATCGGAAAGGGGCAAACTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

511

Amino Acids

58.3

Weight (kDa)

8.35

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT PF03062 277 - 499 5.4e-23 MBOAT, membrane-bound O-acyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 338
Acc65I GGTACC 2 cut(s) 743, 1378
AccB1I GGYRCC 2 cut(s) 743, 1378
AccII CGCG 2 cut(s) 50, 92
AciI CCGC 9 cut(s) 45, 48, 79, 140, 228, 243, 311, 522, 1361
AclI AACGTT 1 cut(s) 848
AclWI GGATC 3 cut(s) 78, 243, 1143
AcoI YGGCCR 1 cut(s) 60
AcsI RAATTY 5 cut(s) 257, 279, 409, 985, 1415
AfaI GTAC 3 cut(s) 745, 877, 1380
AfiI CCNNNNNNNGG 2 cut(s) 447, 1004
AgeI ACCGGT 1 cut(s) 440
AgsI TTSAA 6 cut(s) 358, 459, 817, 1003, 1039, 1345
AhlI ACTAGT 1 cut(s) 863
AjnI CCWGG 2 cut(s) 775, 1374
AloI GAACNNNNNNTCC 2 cut(s) 1127, 1159
AluBI AGCT 6 cut(s) 203, 318, 813, 1042, 1120, 1315
AluI AGCT 6 cut(s) 203, 318, 813, 1042, 1120, 1315
Alw26I GTCTC 3 cut(s) 140, 356, 712
AlwI GGATC 3 cut(s) 78, 243, 1143
AoxI GGCC 4 cut(s) 60, 83, 269, 476
ApeKI GCWGC 1 cut(s) 1120
ApoI RAATTY 5 cut(s) 257, 279, 409, 985, 1415
AsiGI ACCGGT 1 cut(s) 440
Asp718I GGTACC 2 cut(s) 743, 1378
AspS9I GGNCC 1 cut(s) 477
AsuC2I CCSGG 1 cut(s) 175
AsuHPI GGTGA 6 cut(s) 16, 28, 163, 242, 281, 803
AsuII TTCGAA 1 cut(s) 889
BaeI ACNNNNGTAYC 4 cut(s) 599, 632, 859, 892
BanI GGYRCC 2 cut(s) 743, 1378
BauI CACGAG 1 cut(s) 1310
BbvI GCAGC 1 cut(s) 1107
BccI CCATC 3 cut(s) 937, 1213, 1423
BceAI ACGGC 3 cut(s) 142, 891, 1259
BciT130I CCWGG 2 cut(s) 777, 1376
BciVI GTATCC 1 cut(s) 627
BclI TGATCA 2 cut(s) 924, 1392
BcnI CCSGG 1 cut(s) 175
BcoDI GTCTC 3 cut(s) 140, 356, 712
BcuI ACTAGT 1 cut(s) 863
BfaI CTAG 3 cut(s) 530, 864, 1292
BfuAI ACCTGC 1 cut(s) 338
BfuI GTATCC 1 cut(s) 627
BisI GCNGC 4 cut(s) 45, 48, 522, 1121
BlpI GCTNAGC 2 cut(s) 314, 1116
BlsI GCNGC 4 cut(s) 46, 49, 523, 1122
Bme1390I CCNGG 3 cut(s) 175, 777, 1376
BmgT120I GGNCC 1 cut(s) 477
BmiI GGNNCC 5 cut(s) 247, 479, 745, 1010, 1380
BmrFI CCNGG 3 cut(s) 175, 777, 1376
BmsI GCATC 3 cut(s) 313, 663, 1473
BplI GAGNNNNNCTC 2 cut(s) 134, 166
BpmI CTGGAG 1 cut(s) 136
Bpu1102I GCTNAGC 2 cut(s) 314, 1116
Bpu14I TTCGAA 1 cut(s) 889
BpuMI CCSGG 1 cut(s) 175
BsaI GGTCTC 2 cut(s) 140, 356
BsaJI CCNNGG 4 cut(s) 57, 120, 174, 1468
BsaWI WCCGGW 5 cut(s) 248, 291, 440, 619, 935
BsaXI ACNNNNNCTCC 2 cut(s) 1260, 1290
Bsc4I CCNNNNNNNGG 2 cut(s) 447, 1004
Bse118I RCCGGY 2 cut(s) 267, 440
Bse1I ACTGG 3 cut(s) 153, 1389, 1535
Bse3DI GCAATG 2 cut(s) 464, 1320
BseBI CCWGG 2 cut(s) 777, 1376
BseDI CCNNGG 4 cut(s) 57, 120, 174, 1468
BseGI GGATG 5 cut(s) 184, 772, 994, 1224, 1464
BseLI CCNNNNNNNGG 2 cut(s) 447, 1004
BseMI GCAATG 2 cut(s) 464, 1320
BseMII CTCAG 2 cut(s) 649, 1107
BseNI ACTGG 3 cut(s) 153, 1389, 1535
BseRI GAGGAG 3 cut(s) 158, 227, 1193
BseXI GCAGC 1 cut(s) 1107
Bsh1236I CGCG 2 cut(s) 50, 92
Bsh1285I CGRYCG 1 cut(s) 90
BshFI GGCC 4 cut(s) 62, 85, 271, 478
BshNI GGYRCC 2 cut(s) 743, 1378
BshTI ACCGGT 1 cut(s) 440
BsiEI CGRYCG 1 cut(s) 90
BslFI GGGAC 1 cut(s) 39
BslI CCNNNNNNNGG 2 cut(s) 447, 1004
BsmAI GTCTC 3 cut(s) 140, 356, 712
BsmBI CGTCTC 1 cut(s) 712
BsmFI GGGAC 1 cut(s) 39
BsmI GAATGC 1 cut(s) 1168
BsnI GGCC 4 cut(s) 62, 85, 271, 478
Bso31I GGTCTC 2 cut(s) 140, 356
Bsp119I TTCGAA 1 cut(s) 889
Bsp143I GATC 9 cut(s) 70, 87, 168, 235, 461, 924, 1135, 1392, 1443
Bsp1720I GCTNAGC 2 cut(s) 314, 1116
Bsp68I TCGCGA 1 cut(s) 92
BspACI CCGC 9 cut(s) 45, 48, 79, 140, 228, 243, 311, 522, 1361
BspANI GGCC 4 cut(s) 62, 85, 271, 478
BspCNI CTCAG 2 cut(s) 648, 1108
BspFNI CGCG 2 cut(s) 50, 92
BspHI TCATGA 1 cut(s) 802
BspLI GGNNCC 5 cut(s) 247, 479, 745, 1010, 1380
BspMI ACCTGC 1 cut(s) 338
BspPI GGATC 3 cut(s) 78, 243, 1143
BspT104I TTCGAA 1 cut(s) 889
BspT107I GGYRCC 2 cut(s) 743, 1378
BspTNI GGTCTC 2 cut(s) 140, 356
BsrDI GCAATG 2 cut(s) 464, 1320
BsrFI RCCGGY 2 cut(s) 267, 440
BsrI ACTGG 3 cut(s) 153, 1389, 1535
BssAI RCCGGY 2 cut(s) 267, 440
BssECI CCNNGG 4 cut(s) 57, 120, 174, 1468
BssMI GATC 9 cut(s) 70, 87, 168, 235, 461, 924, 1135, 1392, 1443
BssSI CACGAG 1 cut(s) 1310
BssT1I CCWWGG 1 cut(s) 120
Bst2BI CACGAG 1 cut(s) 1310
Bst2UI CCWGG 2 cut(s) 777, 1376
Bst4CI ACNGT 5 cut(s) 34, 40, 1174, 1194, 1486
Bst6I CTCTTC 4 cut(s) 359, 507, 588, 1053
BstBI TTCGAA 1 cut(s) 889
BstC8I GCNNGC 3 cut(s) 395, 685, 1247
BstDEI CTNAG 4 cut(s) 314, 635, 809, 1116
BstDSI CCRYGG 1 cut(s) 57
BstF5I GGATG 5 cut(s) 184, 772, 994, 1224, 1464
BstFNI CGCG 2 cut(s) 50, 92
BstKTI GATC 9 cut(s) 73, 90, 171, 238, 464, 927, 1138, 1395, 1446
BstMAI GTCTC 3 cut(s) 140, 356, 712
BstMBI GATC 9 cut(s) 70, 87, 168, 235, 461, 924, 1135, 1392, 1443
BstMCI CGRYCG 1 cut(s) 90
BstMWI GCNNNNNNNGC 2 cut(s) 260, 475
BstNI CCWGG 2 cut(s) 777, 1376
BstNSI RCATGY 1 cut(s) 1078
BstSCI CCNGG 3 cut(s) 173, 775, 1374
BstUI CGCG 2 cut(s) 50, 92
BstV1I GCAGC 1 cut(s) 1107
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BsuI GTATCC 1 cut(s) 627
BsuRI GGCC 4 cut(s) 62, 85, 271, 478
BtgI CCRYGG 1 cut(s) 57
BtsCI GGATG 5 cut(s) 184, 772, 994, 1224, 1464
BtsIMutI CAGTG 2 cut(s) 160, 1382
BtuMI TCGCGA 1 cut(s) 92
BveI ACCTGC 1 cut(s) 338
Cac8I GCNNGC 3 cut(s) 395, 685, 1247
CciI TCATGA 1 cut(s) 802
Cfr10I RCCGGY 2 cut(s) 267, 440
Cfr13I GGNCC 1 cut(s) 477
Csp6I GTAC 3 cut(s) 744, 876, 1379
CspAI ACCGGT 1 cut(s) 440
CspCI CAANNNNNGTGG 2 cut(s) 1371, 1406
CviAII CATG 9 cut(s) 344, 803, 835, 882, 1053, 1075, 1253, 1480, 1502
CviQI GTAC 3 cut(s) 744, 876, 1379
DdeI CTNAG 4 cut(s) 314, 635, 809, 1116
DpnI GATC 9 cut(s) 72, 89, 170, 237, 463, 926, 1137, 1394, 1445
DpnII GATC 9 cut(s) 70, 87, 168, 235, 461, 924, 1135, 1392, 1443
EaeI YGGCCR 1 cut(s) 60
Eam1104I CTCTTC 4 cut(s) 359, 507, 588, 1053
EarI CTCTTC 4 cut(s) 359, 507, 588, 1053
EciI GGCGGA 2 cut(s) 94, 155
Eco130I CCWWGG 1 cut(s) 120
Eco31I GGTCTC 2 cut(s) 140, 356
EcoRI GAATTC 1 cut(s) 985
EcoRII CCWGG 2 cut(s) 775, 1374
EcoT14I CCWWGG 1 cut(s) 120
EcoT22I ATGCAT 2 cut(s) 1076, 1322
ErhI CCWWGG 1 cut(s) 120
Esp3I CGTCTC 1 cut(s) 712
FaeI CATG 9 cut(s) 347, 806, 838, 885, 1056, 1078, 1256, 1483, 1505
FaqI GGGAC 1 cut(s) 39
FatI CATG 9 cut(s) 343, 802, 834, 881, 1052, 1074, 1252, 1479, 1501
FauI CCCGC 1 cut(s) 1354
FbaI TGATCA 2 cut(s) 924, 1392
Fnu4HI GCNGC 4 cut(s) 45, 48, 522, 1121
FokI GGATG 5 cut(s) 191, 779, 981, 1231, 1451
Fsp4HI GCNGC 4 cut(s) 45, 48, 522, 1121
FspBI CTAG 3 cut(s) 530, 864, 1292
GluI GCNGC 4 cut(s) 45, 48, 522, 1121
GsuI CTGGAG 1 cut(s) 136
HaeIII GGCC 4 cut(s) 62, 85, 271, 478
Hin1II CATG 9 cut(s) 347, 806, 838, 885, 1056, 1078, 1256, 1483, 1505
HincII GTYRAC 1 cut(s) 1475
HindII GTYRAC 1 cut(s) 1475
HindIII AAGCTT 2 cut(s) 201, 1040
HphI GGTGA 6 cut(s) 16, 28, 163, 242, 281, 803
Hpy166II GTNNAC 2 cut(s) 388, 1475
Hpy188I TCNGA 8 cut(s) 13, 70, 115, 277, 322, 335, 638, 1518
Hpy188III TCNNGA 9 cut(s) 91, 406, 459, 803, 982, 1139, 1310, 1390, 1420
Hpy8I GTNNAC 2 cut(s) 388, 1475
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 4 cut(s) 282, 491, 997, 1297
HpyCH4III ACNGT 5 cut(s) 34, 40, 1174, 1194, 1486
HpyCH4IV ACGT 1 cut(s) 848
HpyCH4V TGCA 9 cut(s) 347, 687, 718, 1022, 1074, 1166, 1210, 1320, 1464
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 475
HpyF3I CTNAG 4 cut(s) 314, 635, 809, 1116
HpySE526I ACGT 1 cut(s) 848
Hsp92II CATG 9 cut(s) 347, 806, 838, 885, 1056, 1078, 1256, 1483, 1505
KpnI GGTACC 2 cut(s) 747, 1382
Ksp22I TGATCA 2 cut(s) 924, 1392
Kzo9I GATC 9 cut(s) 70, 87, 168, 235, 461, 924, 1135, 1392, 1443
LmnI GCTCC 2 cut(s) 323, 847
Lsp1109I GCAGC 1 cut(s) 1107
LweI GCATC 3 cut(s) 313, 663, 1473
MaeI CTAG 3 cut(s) 530, 864, 1292
MaeII ACGT 1 cut(s) 848
MaeIII GTNAC 6 cut(s) 34, 641, 664, 854, 866, 1334
MalI GATC 9 cut(s) 72, 89, 170, 237, 463, 926, 1137, 1394, 1445
MboI GATC 9 cut(s) 70, 87, 168, 235, 461, 924, 1135, 1392, 1443
MboII GAAGA 7 cut(s) 178, 229, 346, 494, 575, 1040, 1438
MflI RGATCY 1 cut(s) 70
MlyI GAGTC 5 cut(s) 61, 74, 155, 316, 638
MmeI TCCRAC 3 cut(s) 48, 869, 1414
Mph1103I ATGCAT 2 cut(s) 1076, 1322
MseI TTAA 5 cut(s) 300, 413, 435, 698, 1103
MslI CAYNNNNRTG 1 cut(s) 1484
MspR9I CCNGG 3 cut(s) 175, 777, 1376
Mva1269I GAATGC 1 cut(s) 1168
MvaI CCWGG 2 cut(s) 777, 1376
MvnI CGCG 2 cut(s) 50, 92
MwoI GCNNNNNNNGC 2 cut(s) 260, 475
NciI CCSGG 1 cut(s) 175
NdeII GATC 9 cut(s) 70, 87, 168, 235, 461, 924, 1135, 1392, 1443
NlaIII CATG 9 cut(s) 347, 806, 838, 885, 1056, 1078, 1256, 1483, 1505
NlaIV GGNNCC 5 cut(s) 247, 479, 745, 1010, 1380
NmeAIII GCCGAG 1 cut(s) 88
NmuCI GTSAC 3 cut(s) 34, 641, 1334
NruI TCGCGA 1 cut(s) 92
NsiI ATGCAT 2 cut(s) 1076, 1322
NspI RCATGY 1 cut(s) 1078
NspV TTCGAA 1 cut(s) 889
PagI TCATGA 1 cut(s) 802
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PctI GAATGC 1 cut(s) 1168
PfeI GAWTC 5 cut(s) 14, 110, 116, 566, 1513
PinAI ACCGGT 1 cut(s) 440
PkrI GCNGC 4 cut(s) 46, 49, 523, 1122
Ple19I CGATCG 1 cut(s) 90
PleI GAGTC 5 cut(s) 60, 73, 155, 315, 638
PpsI GAGTC 5 cut(s) 60, 73, 155, 315, 638
Psp1406I AACGTT 1 cut(s) 848
Psp6I CCWGG 2 cut(s) 775, 1374
PspGI CCWGG 2 cut(s) 775, 1374
PspN4I GGNNCC 5 cut(s) 247, 479, 745, 1010, 1380
PspPI GGNCC 1 cut(s) 477
PsuI RGATCY 1 cut(s) 70
PvuI CGATCG 1 cut(s) 90
RruI TCGCGA 1 cut(s) 92
RsaI GTAC 3 cut(s) 745, 877, 1380
RsaNI GTAC 3 cut(s) 744, 876, 1379
RseI CAYNNNNRTG 1 cut(s) 1484
SaqAI TTAA 5 cut(s) 300, 413, 435, 698, 1103
SatI GCNGC 4 cut(s) 45, 48, 522, 1121
Sau3AI GATC 9 cut(s) 70, 87, 168, 235, 461, 924, 1135, 1392, 1443
Sau96I GGNCC 1 cut(s) 477
SchI GAGTC 5 cut(s) 61, 74, 155, 316, 638
ScrFI CCNGG 3 cut(s) 175, 777, 1376
SfaNI GCATC 3 cut(s) 313, 663, 1473
SfuI TTCGAA 1 cut(s) 889
SmiMI CAYNNNNRTG 1 cut(s) 1484
SpeI ACTAGT 1 cut(s) 863
SsiI CCGC 9 cut(s) 45, 48, 79, 140, 228, 243, 311, 522, 1361
SspI AATATT 1 cut(s) 1108
SspMI CTAG 3 cut(s) 530, 864, 1292
StyD4I CCNGG 3 cut(s) 173, 775, 1374
StyI CCWWGG 1 cut(s) 120
TaaI ACNGT 5 cut(s) 34, 40, 1174, 1194, 1486
TaiI ACGT 1 cut(s) 851
TaqI TCGA 6 cut(s) 164, 238, 405, 889, 1138, 1427
TaqII GACCGA 1 cut(s) 1460
TauI GCSGC 3 cut(s) 47, 50, 524
TfiI GAWTC 5 cut(s) 14, 110, 116, 566, 1513
Tru1I TTAA 5 cut(s) 300, 413, 435, 698, 1103
Tru9I TTAA 5 cut(s) 300, 413, 435, 698, 1103
TscAI CASTG 2 cut(s) 160, 1389
TseFI GTSAC 3 cut(s) 34, 641, 1334
TseI GCWGC 1 cut(s) 1120
Tsp45I GTSAC 3 cut(s) 34, 641, 1334
TspDTI ATGAA 6 cut(s) 213, 431, 575, 819, 823, 1526
TspRI CASTG 2 cut(s) 160, 1389
XapI RAATTY 5 cut(s) 257, 279, 409, 985, 1415
XceI RCATGY 1 cut(s) 1078
XspI CTAG 3 cut(s) 530, 864, 1292
Zsp2I ATGCAT 2 cut(s) 1076, 1322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.