Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000811

Physical Location & Seq

Genomic Coordinates Reverse (-)

5352434 .. 5356254

Gene Structure 3821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG035400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGGCTACGGACATCTTTATATAGAAGTACTTCTTTTTGCAGTCATTGTTTTTCTATTCTCCCAGAAAAGTTACAAGCCCCCTAAGGAGCCTTTAACAGAGAAGGAAATAGATGATCTATGTGAGGAATGGGTTCCTGAACCTCTCATTCCTCCTATCACAGAAGATATGCAGTATGAACCCCCAGTGTTGGAAAGTGCTGCAGGGCCACATACAATAGTCAATGGCAAAGAATCGACGCCATTACTGACTTCACCCCCAAGTGAGGGTAGCTTGACTGACATTTTAGTGAGGAAACCTTCGTCTTCTTCAGCTCCCAGTATTGTGGATCCGAAAGTGTTACTGGAACTCTTCTCGATGTACCGTGAGTGGCAGGAGGAGAATGTCAAAAAGCTGAGCCAAAAACAGGAAGAGATAGAGAACAAGATAGAAATTGCAGACGCGTTGTCTGTTAAACTTAAGCAACGTTTTAATTATTCAGTGACAGCAATGAAGACATCCTCGCAACATTTATGTGGAGTTCATGCACTGCAGGTAGAGATTGGGGAACTTAAAGGAAGGTTGACGGAGGTTATTAGCAACTGTGATGCAGTGTGCAAGAGAATATCCGCAGAAGGACCAGAGTCTCTTAGGTCATCTGTCAAGTCATTAGTTGTCTGCACCGCACACCAAGAACACCAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

228

Amino Acids

25.42

Weight (kDa)

5.16

Isoelectric Point (pI)

55.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66290 AT5G66290
fragaria_vesca	FvH4_1g12000 FvH4_2g21980
malus_domestica	MD02G1134200.v1.1 MD15G1247200.v1.1
prunus_persica	Prupe.7G166600_v2.0.a1 Prupe.7G166600_v2.0.a1
pyrus_communis	pycom02g10580
rosa_chinensis	RchiOBHm_Chr0c39g0503221 RchiOBHm_Chr1g0353231 RchiOBHm_Chr2g0099641 RchiOBHm_Chr2g0126361 RchiOBHm_Chr5g0080231
rosa_laevigata	RLG00000008117 RLG00000016900 RLG00000021865
rosa_multiflora	Rmu_sc0000394.1_g000010 Rmu_sc0000543.1_g000026 Rmu_sc0005120.1_g000016 Rmu_sc0006325.1_g000056 Rmu_sc0010438.1_g000001 Rmu_sc0035741.1_g000001 Rmu_ssc0000366.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142880 Rroxscaffold_3G00248750 Rroxscaffold_5G00378640 Rroxscaffold_5G00382790 Rroxscaffold_7G00190790
rosa_rugosa	Rorug02G0081700 Rorug02G0258300 Rorug06G0170500
rosa_samantha	Rh1CG034700 Rh1DG035400 Rh2AG131100 Rh2AG189600 Rh2AG189700 Rh2BG134500 Rh2BG230100 Rh2BG328200 Rh2CG135300 Rh2DG135900 Rh2DG196000 Rh2DG196100 Rh2DG196200 Rh3DG312100 Rh4CG305000 Rh4DG111800 Rh5AG369300 Rh5AG496200 Rh5AG496300 Rh5BG555300 Rh5CG578200 Rh5DG254100 Rh5DG254200 Rh6BG167500 Rh6BG167600 Rh6BG241100 Rh7AG282200 Rh7CG301400 Rh7CG301500 Rh7DG435700 Rh7DG435800
rosa_wichuraiana	Rw0G008970 Rw2G010150 Rw3G024850 Rw4G013560 Rw5G022800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	523
AccII	CGCG	1 cut(s)	443
AciI	CCGC	2 cut(s)	609, 663
AclI	AACGTT	1 cut(s)	466
AclWI	GGATC	2 cut(s)	323, 336
AcuI	CTGAAG	1 cut(s)	294
AcyI	GRCGYC	1 cut(s)	239
AfaI	GTAC	2 cut(s)	30, 362
AfiI	CCNNNNNNNGG	4 cut(s)	190, 265, 266, 406
AflII	CTTAAG	1 cut(s)	458
AflIII	ACRYGT	1 cut(s)	441
AhdI	GACNNNNNGTC	1 cut(s)	445
AluBI	AGCT	3 cut(s)	273, 314, 394
AluI	AGCT	3 cut(s)	273, 314, 394
Alw26I	GTCTC	1 cut(s)	630
AlwI	GGATC	2 cut(s)	323, 336
AoxI	GGCC	1 cut(s)	206
ApeKI	GCWGC	1 cut(s)	200
Asp700I	GAANNNNTTC	2 cut(s)	30, 132
AspS9I	GGNCC	2 cut(s)	206, 617
AsuHPI	GGTGA	1 cut(s)	246
AvaII	GGWCC	1 cut(s)	617
AxyI	CCTNAGG	1 cut(s)	84
BamHI	GGATCC	1 cut(s)	328
BbsI	GAAGAC	2 cut(s)	297, 500
BbvI	GCAGC	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	630
BfmI	CTRYAG	2 cut(s)	201, 530
BfrI	CTTAAG	1 cut(s)	458
BfuAI	ACCTGC	1 cut(s)	523
BisI	GCNGC	1 cut(s)	201
BlpI	GCTNAGC	1 cut(s)	395
BlsI	GCNGC	1 cut(s)	202
BmcAI	AGTACT	1 cut(s)	30
Bme18I	GGWCC	1 cut(s)	617
BmeRI	GACNNNNNGTC	1 cut(s)	445
BmgT120I	GGNCC	2 cut(s)	206, 617
BmiI	GGNNCC	3 cut(s)	90, 135, 330
BmrI	ACTGGG	2 cut(s)	179, 312
BmsI	GCATC	1 cut(s)	577
BmuI	ACTGGG	2 cut(s)	179, 312
BoxI	GACNNNNGTC	1 cut(s)	622
BpiI	GAAGAC	2 cut(s)	297, 500
Bpu1102I	GCTNAGC	1 cut(s)	395
BsaHI	GRCGYC	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	4 cut(s)	190, 265, 266, 406
Bse1I	ACTGG	3 cut(s)	185, 318, 348
Bse21I	CCTNAGG	1 cut(s)	84
Bse3DI	GCAATG	1 cut(s)	495
BseGI	GGATG	1 cut(s)	497
BseLI	CCNNNNNNNGG	4 cut(s)	190, 265, 266, 406
BseMI	GCAATG	1 cut(s)	495
BseMII	CTCAG	1 cut(s)	386
BseNI	ACTGG	3 cut(s)	185, 318, 348
BseRI	GAGGAG	1 cut(s)	392
BseXI	GCAGC	1 cut(s)	187
BsgI	GTGCAG	1 cut(s)	643
Bsh1236I	CGCG	1 cut(s)	443
BshFI	GGCC	1 cut(s)	208
BslI	CCNNNNNNNGG	4 cut(s)	190, 265, 266, 406
BsmAI	GTCTC	1 cut(s)	630
BsnI	GGCC	1 cut(s)	208
Bsp143I	GATC	2 cut(s)	115, 328
Bsp1720I	GCTNAGC	1 cut(s)	395
BspACI	CCGC	2 cut(s)	609, 663
BspANI	GGCC	1 cut(s)	208
BspCNI	CTCAG	1 cut(s)	387
BspFNI	CGCG	1 cut(s)	443
BspLI	GGNNCC	3 cut(s)	90, 135, 330
BspMAI	CTGCAG	2 cut(s)	205, 534
BspMI	ACCTGC	1 cut(s)	523
BspPI	GGATC	2 cut(s)	323, 336
BspTI	CTTAAG	1 cut(s)	458
BsrDI	GCAATG	1 cut(s)	495
BsrI	ACTGG	3 cut(s)	185, 318, 348
BssMI	GATC	2 cut(s)	115, 328
BssNI	GRCGYC	1 cut(s)	239
Bst4CI	ACNGT	2 cut(s)	365, 584
Bst6I	CTCTTC	2 cut(s)	356, 405
BstACI	GRCGYC	1 cut(s)	239
BstAFI	CTTAAG	1 cut(s)	458
BstDEI	CTNAG	3 cut(s)	84, 395, 629
BstF5I	GGATG	1 cut(s)	497
BstFNI	CGCG	1 cut(s)	443
BstKTI	GATC	2 cut(s)	118, 331
BstMAI	GTCTC	1 cut(s)	630
BstMBI	GATC	2 cut(s)	115, 328
BstPAI	GACNNNNGTC	1 cut(s)	622
BstSFI	CTRYAG	2 cut(s)	201, 530
BstUI	CGCG	1 cut(s)	443
BstV1I	GCAGC	1 cut(s)	187
BstV2I	GAAGAC	2 cut(s)	297, 500
BstX2I	RGATCY	1 cut(s)	328
BstXI	CCANNNNNNTGG	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	328
Bsu36I	CCTNAGG	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	208
BtsCI	GGATG	1 cut(s)	497
BtsI	GCAGTG	2 cut(s)	527, 597
BtsIMutI	CAGTG	4 cut(s)	192, 486, 527, 597
BveI	ACCTGC	1 cut(s)	523
Cfr13I	GGNCC	2 cut(s)	206, 617
CseI	GACGC	2 cut(s)	247, 449
Csp6I	GTAC	2 cut(s)	29, 361
CviAII	CATG	1 cut(s)	524
CviJI	RGCY	8 cut(s)	6, 79, 91, 208, 273, 314, 394, 399
CviKI_1	RGCY	8 cut(s)	6, 79, 91, 208, 273, 314, 394, 399
CviQI	GTAC	2 cut(s)	29, 361
DdeI	CTNAG	3 cut(s)	84, 395, 629
DpnI	GATC	2 cut(s)	117, 330
DpnII	GATC	2 cut(s)	115, 328
DriI	GACNNNNNGTC	1 cut(s)	445
Eam1104I	CTCTTC	2 cut(s)	356, 405
Eam1105I	GACNNNNNGTC	1 cut(s)	445
EarI	CTCTTC	2 cut(s)	356, 405
Eco47I	GGWCC	1 cut(s)	617
Eco57I	CTGAAG	1 cut(s)	294
Eco81I	CCTNAGG	1 cut(s)	84
FaeI	CATG	1 cut(s)	527
FaiI	YATR	8 cut(s)	21, 23, 121, 170, 177, 213, 514, 525
FalI	AAGNNNNNCTT	2 cut(s)	18, 50
FatI	CATG	1 cut(s)	523
Fnu4HI	GCNGC	1 cut(s)	201
FokI	GGATG	1 cut(s)	484
Fsp4HI	GCNGC	1 cut(s)	201
GluI	GCNGC	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	208
HgaI	GACGC	2 cut(s)	247, 449
Hin1I	GRCGYC	1 cut(s)	239
Hin1II	CATG	1 cut(s)	527
HincII	GTYRAC	1 cut(s)	564
HindII	GTYRAC	1 cut(s)	564
HinfI	GANTC	2 cut(s)	233, 623
HphI	GGTGA	1 cut(s)	246
Hpy166II	GTNNAC	1 cut(s)	564
Hpy188I	TCNGA	1 cut(s)	333
Hpy188III	TCNNGA	3 cut(s)	137, 355, 684
Hpy8I	GTNNAC	1 cut(s)	564
Hpy99I	CGWCG	1 cut(s)	241
HpyAV	CCTTC	4 cut(s)	97, 309, 552, 608
HpyCH4III	ACNGT	2 cut(s)	365, 584
HpyCH4IV	ACGT	1 cut(s)	466
HpyCH4V	TGCA	9 cut(s)	41, 172, 203, 437, 527, 532, 590, 597, 660
HpyF3I	CTNAG	3 cut(s)	84, 395, 629
HpySE526I	ACGT	1 cut(s)	466
Hsp92I	GRCGYC	1 cut(s)	239
Hsp92II	CATG	1 cut(s)	527
Kzo9I	GATC	2 cut(s)	115, 328
LmnI	GCTCC	2 cut(s)	88, 319
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	1 cut(s)	577
MaeII	ACGT	1 cut(s)	466
MaeIII	GTNAC	3 cut(s)	71, 339, 481
MalI	GATC	2 cut(s)	117, 330
MboI	GATC	2 cut(s)	115, 328
MboII	GAAGA	6 cut(s)	176, 297, 300, 343, 422, 505
MflI	RGATCY	1 cut(s)	328
MluCI	AATT	2 cut(s)	432, 472
MluI	ACGCGT	1 cut(s)	441
MlyI	GAGTC	1 cut(s)	632
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	8 cut(s)	118, 153, 162, 259, 285, 370, 511, 562
MroXI	GAANNNNTTC	2 cut(s)	30, 132
MseI	TTAA	5 cut(s)	95, 453, 459, 471, 552
MslI	CAYNNNNRTG	2 cut(s)	287, 513
MspCI	CTTAAG	1 cut(s)	458
MvnI	CGCG	1 cut(s)	443
NdeII	GATC	2 cut(s)	115, 328
NlaIII	CATG	1 cut(s)	527
NlaIV	GGNNCC	3 cut(s)	90, 135, 330
NmuCI	GTSAC	1 cut(s)	481
PdmI	GAANNNNTTC	2 cut(s)	30, 132
PfeI	GAWTC	1 cut(s)	233
PkrI	GCNGC	1 cut(s)	202
PleI	GAGTC	1 cut(s)	631
PpsI	GAGTC	1 cut(s)	631
PshAI	GACNNNNGTC	1 cut(s)	622
Psp1406I	AACGTT	1 cut(s)	466
PspN4I	GGNNCC	3 cut(s)	90, 135, 330
PspPI	GGNCC	2 cut(s)	206, 617
PstI	CTGCAG	2 cut(s)	205, 534
PsuI	RGATCY	1 cut(s)	328
RsaI	GTAC	2 cut(s)	30, 362
RsaNI	GTAC	2 cut(s)	29, 361
RseI	CAYNNNNRTG	2 cut(s)	287, 513
SaqAI	TTAA	5 cut(s)	95, 453, 459, 471, 552
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	2 cut(s)	115, 328
Sau96I	GGNCC	2 cut(s)	206, 617
ScaI	AGTACT	1 cut(s)	30
SchI	GAGTC	1 cut(s)	632
SfaNI	GCATC	1 cut(s)	577
SfcI	CTRYAG	2 cut(s)	201, 530
SinI	GGWCC	1 cut(s)	617
SmiMI	CAYNNNNRTG	2 cut(s)	287, 513
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	2 cut(s)	432, 472
SsiI	CCGC	2 cut(s)	609, 663
TaaI	ACNGT	2 cut(s)	365, 584
TaiI	ACGT	1 cut(s)	469
TaqI	TCGA	2 cut(s)	236, 356
TasI	AATT	2 cut(s)	432, 472
TatI	WGTACW	1 cut(s)	28
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	5 cut(s)	95, 453, 459, 471, 552
Tru9I	TTAA	5 cut(s)	95, 453, 459, 471, 552
TscAI	CASTG	4 cut(s)	192, 486, 534, 597
TseFI	GTSAC	1 cut(s)	481
TseI	GCWGC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	3 cut(s)	192, 506, 512
TspGWI	ACGGA	2 cut(s)	24, 581
TspRI	CASTG	4 cut(s)	192, 486, 534, 597
Vha464I	CTTAAG	1 cut(s)	458
VpaK11BI	GGWCC	1 cut(s)	617
XmnI	GAANNNNTTC	2 cut(s)	30, 132
ZrmI	AGTACT	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.