RchiOBHm_Chr1g0353231

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000811
Physical Location & Seq
Reverse (-)
46497642 .. 46501299
3658 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57888

Sequence Viewer

Length: 654 bp
ATGGGCTACGGACATCTTTATGTAGAAGTACTTCTTTTTGCAGTCATTGTTTTTCTATTCTCCCAGAAAAGTTACAAGCCCCCTAAGAAGCCTTTAACAGAGAAGGAAATAGATGATCTATGTGAGGAATGGGTTCCTGAACCTCTCATTCCTCCTATCACAGAAGATATGCAGTATGAACCCCCAGTGTTGGAAAGAACATCGACGCCATTACTGACTTCACCCCCAAGTGAGGGTAGCTTGACTGACATTTTAGTGAGGAAACCTTCGTCTTCTTCAGCTCCCAGTATTGTGGATCCAAAAGTGTTACTGGAACTCTTCTCGATGTACCGTGAGTGGCAGGAGGAGAATGTCAAAAAGCTGAGCCAAAAACAGGAAGAGATAGAGAACAAGATAGAAATTGCGGACGCGTTGTCTGTTAAACTTAAGCAACGTTTTAATTATTCAGTGACAGCAATGAAGACATTCTCGCAACATTTATGTGGAGTTCATGCACTGCAGGTAGAGATTGGGGAACTTAAAGGAAGGTTGACGGAGGTTATTAGCAACTGTGATGCAGTGTGCAAGAGAATATCCGCAGAAGGACCAGAGTCTCTTCGGTCATCTGTCAAGCCATTAGTTATCTGCACCGCACACCAAGAACACCAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

24.48

Weight (kDa)

5.36

Isoelectric Point (pI)

53.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 490
AccII CGCG 1 cut(s) 410
AciI CCGC 3 cut(s) 404, 576, 630
AclI AACGTT 1 cut(s) 433
AclWI GGATC 2 cut(s) 290, 303
AcuI CTGAAG 1 cut(s) 261
AcyI GRCGYC 1 cut(s) 206
AfaI GTAC 2 cut(s) 30, 329
AfiI CCNNNNNNNGG 4 cut(s) 190, 232, 233, 373
AflII CTTAAG 1 cut(s) 425
AflIII ACRYGT 1 cut(s) 408
AhdI GACNNNNNGTC 1 cut(s) 412
AluBI AGCT 3 cut(s) 240, 281, 361
AluI AGCT 3 cut(s) 240, 281, 361
Alw26I GTCTC 1 cut(s) 597
AlwI GGATC 2 cut(s) 290, 303
Asp700I GAANNNNTTC 3 cut(s) 30, 132, 464
AspS9I GGNCC 1 cut(s) 584
AsuHPI GGTGA 1 cut(s) 213
AvaII GGWCC 1 cut(s) 584
BamHI GGATCC 1 cut(s) 295
BarI GAAGNNNNNNTAC 2 cut(s) 15, 47
BbsI GAAGAC 2 cut(s) 264, 467
BcoDI GTCTC 1 cut(s) 597
BfmI CTRYAG 1 cut(s) 497
BfrI CTTAAG 1 cut(s) 425
BfuAI ACCTGC 1 cut(s) 490
BlpI GCTNAGC 1 cut(s) 362
BmcAI AGTACT 1 cut(s) 30
Bme18I GGWCC 1 cut(s) 584
BmeRI GACNNNNNGTC 1 cut(s) 412
BmgT120I GGNCC 1 cut(s) 584
BmiI GGNNCC 2 cut(s) 135, 297
BmrI ACTGGG 2 cut(s) 179, 279
BmsI GCATC 1 cut(s) 544
BmuI ACTGGG 2 cut(s) 179, 279
BoxI GACNNNNGTC 1 cut(s) 589
BpiI GAAGAC 2 cut(s) 264, 467
Bpu1102I GCTNAGC 1 cut(s) 362
BsaHI GRCGYC 1 cut(s) 206
Bsc4I CCNNNNNNNGG 4 cut(s) 190, 232, 233, 373
Bse1I ACTGG 3 cut(s) 185, 285, 315
Bse3DI GCAATG 1 cut(s) 462
BseLI CCNNNNNNNGG 4 cut(s) 190, 232, 233, 373
BseMI GCAATG 1 cut(s) 462
BseMII CTCAG 1 cut(s) 353
BseNI ACTGG 3 cut(s) 185, 285, 315
BseRI GAGGAG 1 cut(s) 359
BsgI GTGCAG 1 cut(s) 610
Bsh1236I CGCG 1 cut(s) 410
BslI CCNNNNNNNGG 4 cut(s) 190, 232, 233, 373
BsmAI GTCTC 1 cut(s) 597
Bsp143I GATC 2 cut(s) 115, 295
Bsp1720I GCTNAGC 1 cut(s) 362
BspACI CCGC 3 cut(s) 404, 576, 630
BspCNI CTCAG 1 cut(s) 354
BspFNI CGCG 1 cut(s) 410
BspLI GGNNCC 2 cut(s) 135, 297
BspMAI CTGCAG 1 cut(s) 501
BspMI ACCTGC 1 cut(s) 490
BspPI GGATC 2 cut(s) 290, 303
BspTI CTTAAG 1 cut(s) 425
BsrDI GCAATG 1 cut(s) 462
BsrI ACTGG 3 cut(s) 185, 285, 315
BssMI GATC 2 cut(s) 115, 295
BssNI GRCGYC 1 cut(s) 206
Bst4CI ACNGT 2 cut(s) 332, 551
Bst6I CTCTTC 3 cut(s) 323, 372, 600
BstACI GRCGYC 1 cut(s) 206
BstAFI CTTAAG 1 cut(s) 425
BstDEI CTNAG 2 cut(s) 84, 362
BstFNI CGCG 1 cut(s) 410
BstKTI GATC 2 cut(s) 118, 298
BstMAI GTCTC 1 cut(s) 597
BstMBI GATC 2 cut(s) 115, 295
BstPAI GACNNNNGTC 1 cut(s) 589
BstSFI CTRYAG 1 cut(s) 497
BstUI CGCG 1 cut(s) 410
BstV2I GAAGAC 2 cut(s) 264, 467
BstX2I RGATCY 1 cut(s) 295
BstXI CCANNNNNNTGG 1 cut(s) 292
BstYI RGATCY 1 cut(s) 295
BtsI GCAGTG 2 cut(s) 494, 564
BtsIMutI CAGTG 4 cut(s) 192, 453, 494, 564
BveI ACCTGC 1 cut(s) 490
Cfr13I GGNCC 1 cut(s) 584
CseI GACGC 2 cut(s) 214, 416
Csp6I GTAC 2 cut(s) 29, 328
CviAII CATG 1 cut(s) 491
CviJI RGCY 8 cut(s) 6, 79, 91, 240, 281, 361, 366, 613
CviKI_1 RGCY 8 cut(s) 6, 79, 91, 240, 281, 361, 366, 613
CviQI GTAC 2 cut(s) 29, 328
DdeI CTNAG 2 cut(s) 84, 362
DpnI GATC 2 cut(s) 117, 297
DpnII GATC 2 cut(s) 115, 295
DriI GACNNNNNGTC 1 cut(s) 412
Eam1104I CTCTTC 3 cut(s) 323, 372, 600
Eam1105I GACNNNNNGTC 1 cut(s) 412
EarI CTCTTC 3 cut(s) 323, 372, 600
Eco47I GGWCC 1 cut(s) 584
Eco57I CTGAAG 1 cut(s) 261
FaeI CATG 1 cut(s) 494
FaiI YATR 6 cut(s) 21, 121, 170, 177, 481, 492
FalI AAGNNNNNCTT 2 cut(s) 18, 50
FatI CATG 1 cut(s) 490
HgaI GACGC 2 cut(s) 214, 416
Hin1I GRCGYC 1 cut(s) 206
Hin1II CATG 1 cut(s) 494
HincII GTYRAC 1 cut(s) 531
HindII GTYRAC 1 cut(s) 531
HinfI GANTC 1 cut(s) 590
HphI GGTGA 1 cut(s) 213
Hpy166II GTNNAC 1 cut(s) 531
Hpy188III TCNNGA 3 cut(s) 137, 322, 651
Hpy8I GTNNAC 1 cut(s) 531
Hpy99I CGWCG 1 cut(s) 208
HpyAV CCTTC 4 cut(s) 97, 276, 519, 575
HpyCH4III ACNGT 2 cut(s) 332, 551
HpyCH4IV ACGT 1 cut(s) 433
HpyCH4V TGCA 7 cut(s) 41, 172, 494, 499, 557, 564, 627
HpyF3I CTNAG 2 cut(s) 84, 362
HpySE526I ACGT 1 cut(s) 433
Hsp92I GRCGYC 1 cut(s) 206
Hsp92II CATG 1 cut(s) 494
Kzo9I GATC 2 cut(s) 115, 295
LmnI GCTCC 1 cut(s) 286
LpnPI CCDG 9 cut(s) 77, 150, 198, 296, 298, 326, 359, 485, 600
LweI GCATC 1 cut(s) 544
MaeII ACGT 1 cut(s) 433
MaeIII GTNAC 3 cut(s) 71, 306, 448
MalI GATC 2 cut(s) 117, 297
MboI GATC 2 cut(s) 115, 295
MboII GAAGA 7 cut(s) 176, 264, 267, 310, 389, 472, 587
MflI RGATCY 1 cut(s) 295
MluCI AATT 2 cut(s) 399, 439
MluI ACGCGT 1 cut(s) 408
MlyI GAGTC 1 cut(s) 599
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 7 cut(s) 118, 153, 162, 226, 252, 337, 529
MroXI GAANNNNTTC 3 cut(s) 30, 132, 464
MseI TTAA 5 cut(s) 95, 420, 426, 438, 519
MslI CAYNNNNRTG 3 cut(s) 18, 254, 480
MspCI CTTAAG 1 cut(s) 425
MvnI CGCG 1 cut(s) 410
NdeII GATC 2 cut(s) 115, 295
NlaIII CATG 1 cut(s) 494
NlaIV GGNNCC 2 cut(s) 135, 297
NmuCI GTSAC 1 cut(s) 448
PdmI GAANNNNTTC 3 cut(s) 30, 132, 464
PleI GAGTC 1 cut(s) 598
PpsI GAGTC 1 cut(s) 598
PshAI GACNNNNGTC 1 cut(s) 589
Psp1406I AACGTT 1 cut(s) 433
PspN4I GGNNCC 2 cut(s) 135, 297
PspPI GGNCC 1 cut(s) 584
PstI CTGCAG 1 cut(s) 501
PsuI RGATCY 1 cut(s) 295
RsaI GTAC 2 cut(s) 30, 329
RsaNI GTAC 2 cut(s) 29, 328
RseI CAYNNNNRTG 3 cut(s) 18, 254, 480
SaqAI TTAA 5 cut(s) 95, 420, 426, 438, 519
Sau3AI GATC 2 cut(s) 115, 295
Sau96I GGNCC 1 cut(s) 584
ScaI AGTACT 1 cut(s) 30
SchI GAGTC 1 cut(s) 599
SetI ASST 9 cut(s) 145, 242, 268, 283, 363, 436, 504, 530, 540
SfaNI GCATC 1 cut(s) 544
SfcI CTRYAG 1 cut(s) 497
SinI GGWCC 1 cut(s) 584
SmiMI CAYNNNNRTG 3 cut(s) 18, 254, 480
SmlI CTYRAG 1 cut(s) 425
SmoI CTYRAG 1 cut(s) 425
Sse9I AATT 2 cut(s) 399, 439
SsiI CCGC 3 cut(s) 404, 576, 630
TaaI ACNGT 2 cut(s) 332, 551
TaiI ACGT 1 cut(s) 436
TaqI TCGA 2 cut(s) 203, 323
TaqII GACCGA 1 cut(s) 588
TasI AATT 2 cut(s) 399, 439
TatI WGTACW 1 cut(s) 28
Tru1I TTAA 5 cut(s) 95, 420, 426, 438, 519
Tru9I TTAA 5 cut(s) 95, 420, 426, 438, 519
TscAI CASTG 4 cut(s) 192, 453, 501, 564
TseFI GTSAC 1 cut(s) 448
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 3 cut(s) 192, 473, 479
TspGWI ACGGA 2 cut(s) 24, 548
TspRI CASTG 4 cut(s) 192, 453, 501, 564
Vha464I CTTAAG 1 cut(s) 425
VpaK11BI GGWCC 1 cut(s) 584
XmnI GAANNNNTTC 3 cut(s) 30, 132, 464
ZrmI AGTACT 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.