Rh3DG312100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000811
Physical Location & Seq
Reverse (-)
33550748 .. 33553958
3211 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG312100.1

Sequence Viewer

Length: 579 bp
ATGGGTAAGTATTATGCTTTTGTAGCATTATTAGTCATGGGAACTTCTTTTATAGCATTATGGTTCTGTATTAAGCATATTAGTTCTCCTGCTAATATTTTTCACACTTCCTGCTGTGTTGGAAAGTCGACGCCATTACTGACTTCACCCCCAAGTGAGGGTAGCTTGACTGACATTTTAGTGAGGAAACCTTCGTCTTCTTCAGCTCCCAGTATTGTGGATCCGAAAGTGTTACTGGAACTCTTCTCGATGTACCGTGAGTGGCAGGAGGAGAATGTCAAAAAGCTGAGCCAAAAACAGGAAGAGATAGAGAACAAGATAGAAATTGCGGACGCGTTGTCTGTTAAACTTAAGCAACGTTTTAATTATTCAGTGACAGCAATGAAGACATCCTCGCAACATTTATGTGGAGTTCCTGCACTGCAGGTAGAGATTGGGGAACTTAAAGGAAGGTTGACGGAGGTTATTAGCAACTGTGATGCAGTGTGCAAGAGAATATCCGCAGAAGGACCAGAGTCTCTTCGGTCATCTGTCAAGCCGTTAGTTATCTGCACCGCACACCAAGAACACCAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

21.19

Weight (kDa)

8.14

Isoelectric Point (pI)

62.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 415
AccI GTMKAC 1 cut(s) 128
AccII CGCG 1 cut(s) 335
AciI CCGC 3 cut(s) 329, 501, 555
AclI AACGTT 1 cut(s) 358
AclWI GGATC 2 cut(s) 215, 228
AcuI CTGAAG 1 cut(s) 186
AcyI GRCGYC 1 cut(s) 131
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 3 cut(s) 157, 158, 298
AflII CTTAAG 1 cut(s) 350
AflIII ACRYGT 1 cut(s) 333
AhdI GACNNNNNGTC 1 cut(s) 337
AluBI AGCT 3 cut(s) 165, 206, 286
AluI AGCT 3 cut(s) 165, 206, 286
Alw26I GTCTC 1 cut(s) 522
AlwI GGATC 2 cut(s) 215, 228
AspS9I GGNCC 1 cut(s) 509
AsuHPI GGTGA 1 cut(s) 138
AvaII GGWCC 1 cut(s) 509
BamHI GGATCC 1 cut(s) 220
BbsI GAAGAC 2 cut(s) 189, 392
BceAI ACGGC 1 cut(s) 523
BcoDI GTCTC 1 cut(s) 522
BfmI CTRYAG 1 cut(s) 422
BfrI CTTAAG 1 cut(s) 350
BfuAI ACCTGC 1 cut(s) 415
BlpI GCTNAGC 1 cut(s) 287
Bme18I GGWCC 1 cut(s) 509
BmeRI GACNNNNNGTC 1 cut(s) 337
BmgT120I GGNCC 1 cut(s) 509
BmiI GGNNCC 1 cut(s) 222
BmrI ACTGGG 1 cut(s) 204
BmsI GCATC 1 cut(s) 469
BmuI ACTGGG 1 cut(s) 204
BoxI GACNNNNGTC 1 cut(s) 514
BpiI GAAGAC 2 cut(s) 189, 392
Bpu1102I GCTNAGC 1 cut(s) 287
BsaHI GRCGYC 1 cut(s) 131
Bsc4I CCNNNNNNNGG 3 cut(s) 157, 158, 298
Bse1I ACTGG 2 cut(s) 210, 240
Bse3DI GCAATG 1 cut(s) 387
BseGI GGATG 1 cut(s) 389
BseLI CCNNNNNNNGG 3 cut(s) 157, 158, 298
BseMI GCAATG 1 cut(s) 387
BseMII CTCAG 1 cut(s) 278
BseNI ACTGG 2 cut(s) 210, 240
BseRI GAGGAG 1 cut(s) 284
BsgI GTGCAG 2 cut(s) 402, 535
Bsh1236I CGCG 1 cut(s) 335
BslI CCNNNNNNNGG 3 cut(s) 157, 158, 298
BsmAI GTCTC 1 cut(s) 522
Bsp143I GATC 1 cut(s) 220
Bsp1720I GCTNAGC 1 cut(s) 287
BspACI CCGC 3 cut(s) 329, 501, 555
BspCNI CTCAG 1 cut(s) 279
BspFNI CGCG 1 cut(s) 335
BspLI GGNNCC 1 cut(s) 222
BspMAI CTGCAG 1 cut(s) 426
BspMI ACCTGC 1 cut(s) 415
BspPI GGATC 2 cut(s) 215, 228
BspTI CTTAAG 1 cut(s) 350
BsrDI GCAATG 1 cut(s) 387
BsrI ACTGG 2 cut(s) 210, 240
BssMI GATC 1 cut(s) 220
BssNI GRCGYC 1 cut(s) 131
Bst4CI ACNGT 2 cut(s) 257, 476
Bst6I CTCTTC 3 cut(s) 248, 297, 525
BstACI GRCGYC 1 cut(s) 131
BstAFI CTTAAG 1 cut(s) 350
BstDEI CTNAG 1 cut(s) 287
BstF5I GGATG 1 cut(s) 389
BstFNI CGCG 1 cut(s) 335
BstKTI GATC 1 cut(s) 223
BstMAI GTCTC 1 cut(s) 522
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstPAI GACNNNNGTC 1 cut(s) 514
BstSFI CTRYAG 1 cut(s) 422
BstUI CGCG 1 cut(s) 335
BstV2I GAAGAC 2 cut(s) 189, 392
BstX2I RGATCY 1 cut(s) 220
BstXI CCANNNNNNTGG 1 cut(s) 217
BstYI RGATCY 1 cut(s) 220
BtsCI GGATG 1 cut(s) 389
BtsI GCAGTG 2 cut(s) 419, 489
BtsIMutI CAGTG 3 cut(s) 378, 419, 489
BveI ACCTGC 1 cut(s) 415
Cfr13I GGNCC 1 cut(s) 509
CseI GACGC 2 cut(s) 139, 341
Csp6I GTAC 1 cut(s) 253
CviAII CATG 1 cut(s) 37
CviJI RGCY 5 cut(s) 165, 206, 286, 291, 538
CviKI_1 RGCY 5 cut(s) 165, 206, 286, 291, 538
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 1 cut(s) 287
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
DriI GACNNNNNGTC 1 cut(s) 337
Eam1104I CTCTTC 3 cut(s) 248, 297, 525
Eam1105I GACNNNNNGTC 1 cut(s) 337
EarI CTCTTC 3 cut(s) 248, 297, 525
Eco47I GGWCC 1 cut(s) 509
Eco57I CTGAAG 1 cut(s) 186
FaeI CATG 1 cut(s) 40
FaiI YATR 6 cut(s) 15, 38, 53, 61, 78, 406
FatI CATG 1 cut(s) 36
FblI GTMKAC 1 cut(s) 128
FokI GGATG 1 cut(s) 376
HgaI GACGC 2 cut(s) 139, 341
Hin1I GRCGYC 1 cut(s) 131
Hin1II CATG 1 cut(s) 40
HincII GTYRAC 2 cut(s) 129, 456
HindII GTYRAC 2 cut(s) 129, 456
HinfI GANTC 1 cut(s) 515
HphI GGTGA 1 cut(s) 138
Hpy166II GTNNAC 2 cut(s) 129, 456
Hpy188I TCNGA 1 cut(s) 225
Hpy188III TCNNGA 2 cut(s) 247, 576
Hpy8I GTNNAC 2 cut(s) 129, 456
Hpy99I CGWCG 1 cut(s) 133
HpyAV CCTTC 3 cut(s) 201, 444, 500
HpyCH4III ACNGT 2 cut(s) 257, 476
HpyCH4IV ACGT 1 cut(s) 358
HpyCH4V TGCA 5 cut(s) 419, 424, 482, 489, 552
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpyF3I CTNAG 1 cut(s) 287
HpySE526I ACGT 1 cut(s) 358
Hsp92I GRCGYC 1 cut(s) 131
Hsp92II CATG 1 cut(s) 40
Kzo9I GATC 1 cut(s) 220
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 9 cut(s) 102, 124, 221, 223, 251, 284, 410, 429, 525
LweI GCATC 1 cut(s) 469
MaeII ACGT 1 cut(s) 358
MaeIII GTNAC 2 cut(s) 231, 373
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 6 cut(s) 189, 192, 235, 314, 397, 512
MflI RGATCY 1 cut(s) 220
MluCI AATT 2 cut(s) 324, 364
MluI ACGCGT 1 cut(s) 333
MlyI GAGTC 1 cut(s) 524
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 5 cut(s) 151, 177, 262, 403, 454
MseI TTAA 5 cut(s) 72, 345, 351, 363, 444
MslI CAYNNNNRTG 2 cut(s) 179, 405
MspCI CTTAAG 1 cut(s) 350
MvnI CGCG 1 cut(s) 335
MwoI GCNNNNNNNGC 1 cut(s) 23
NdeII GATC 1 cut(s) 220
NlaIII CATG 1 cut(s) 40
NlaIV GGNNCC 1 cut(s) 222
NmuCI GTSAC 1 cut(s) 373
PleI GAGTC 1 cut(s) 523
PpsI GAGTC 1 cut(s) 523
PshAI GACNNNNGTC 1 cut(s) 514
Psp1406I AACGTT 1 cut(s) 358
PspN4I GGNNCC 1 cut(s) 222
PspPI GGNCC 1 cut(s) 509
PstI CTGCAG 1 cut(s) 426
PsuI RGATCY 1 cut(s) 220
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
RseI CAYNNNNRTG 2 cut(s) 179, 405
SalI GTCGAC 1 cut(s) 127
SaqAI TTAA 5 cut(s) 72, 345, 351, 363, 444
Sau3AI GATC 1 cut(s) 220
Sau96I GGNCC 1 cut(s) 509
SchI GAGTC 1 cut(s) 524
SetI ASST 8 cut(s) 167, 193, 208, 288, 361, 429, 455, 465
SfaNI GCATC 1 cut(s) 469
SfcI CTRYAG 1 cut(s) 422
SinI GGWCC 1 cut(s) 509
SmiMI CAYNNNNRTG 2 cut(s) 179, 405
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
Sse9I AATT 2 cut(s) 324, 364
SsiI CCGC 3 cut(s) 329, 501, 555
SspI AATATT 1 cut(s) 97
TaaI ACNGT 2 cut(s) 257, 476
TaiI ACGT 1 cut(s) 361
TaqI TCGA 2 cut(s) 128, 248
TaqII GACCGA 1 cut(s) 513
TasI AATT 2 cut(s) 324, 364
Tru1I TTAA 5 cut(s) 72, 345, 351, 363, 444
Tru9I TTAA 5 cut(s) 72, 345, 351, 363, 444
TscAI CASTG 3 cut(s) 378, 426, 489
TseFI GTSAC 1 cut(s) 373
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 1 cut(s) 398
TspGWI ACGGA 1 cut(s) 473
TspRI CASTG 3 cut(s) 378, 426, 489
Vha464I CTTAAG 1 cut(s) 350
VpaK11BI GGWCC 1 cut(s) 509
XmiI GTMKAC 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.