Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000811

Physical Location & Seq

Genomic Coordinates Forward (+)

18674738 .. 18683695

Gene Structure 8958 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG189600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCCGAAGGCTCCTCCGATCCTTCTCTTGATCTAAGCAGTGAAAATGAAGCATGTGAAGTATTCGCAAGAGCCGGACAACAATACCAAGTTGGAGATTGTGGATTATCAAGAATCAATCACAATACTTTGGTATCTGGTGATGTGCGAGGAAAGCTTCCATGGATGACACCAGAATTGTTGAACGGTAGCAATAGCCGGGTCGCTGAGATTGTTGCTAACTTCATTGTGAAGGGTCTGGTATTCCAGCAAGGTCGTAGTTCAGGCATATCGTCAGGCAATTACAACTCCGCCACTTGGATTTGGGTGCTGATCTTGGAAGAAGGACCTAAGCAATTAGATCTTGCGTTCTTGGAATCAAAAGAGGAGGAGAGAAGACTTTTGATTGAAGGTTCTCGGTTTACGAACTTTGTGGGAATACTTAGCCAAGGACTAAGAATAGCTCCTCCTGAAGCTCCAGCTACTGGTTATATGTTTGGCAAGGGGATTTACTTTGCTGACCTTGTCAGTAAGAGTGCTCAGTATTGCTATACAGATAAGAAAAATCCTATGGGCCTCATGCTTTTAAGTGAAGTTTCCTTGGGAGAGATCCATGAGCTCAAGAAGGCCACATATATGGATAAACCTCCTAAGGGAAAGCACTCTACGAAGGGACTTGGCAAGAAAAAACCTGAGTCGGACTATGTTAAATGGAGAGATGATGCCACTGTGCCCTGGGCAAACCAGTGGATTCACATGTCAGGGCCTCTGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0003950 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006464 GO:0006471 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016070 GO:0016740 GO:0016757 GO:0016763 GO:0016874 GO:0016886 GO:0019538 GO:0022616 GO:0033554 GO:0033993 GO:0034641 GO:0034645 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0071704 GO:0090304 GO:0097305 GO:0140097 GO:1901360 GO:1901564 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 map03410 map04210 map04212 map04214 map04217

Pfam Domains

Protein Families

BRCT PADR1 PARP PARP_reg WGR zf-PARP

Protein Analysis

251

Amino Acids

27.69

Weight (kDa)

6.45

Isoelectric Point (pI)

37.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PARP	PF00644	121 - 241	9.6e-47	Poly(ADP-ribose) polymerase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66290 AT5G66290
fragaria_vesca	FvH4_1g12000 FvH4_2g21980
malus_domestica	MD02G1134200.v1.1 MD15G1247200.v1.1
prunus_persica	Prupe.7G166600_v2.0.a1 Prupe.7G166600_v2.0.a1
pyrus_communis	pycom02g10580
rosa_chinensis	RchiOBHm_Chr0c39g0503221 RchiOBHm_Chr1g0353231 RchiOBHm_Chr2g0099641 RchiOBHm_Chr2g0126361 RchiOBHm_Chr5g0080231
rosa_laevigata	RLG00000008117 RLG00000016900 RLG00000021865
rosa_multiflora	Rmu_sc0000394.1_g000010 Rmu_sc0000543.1_g000026 Rmu_sc0005120.1_g000016 Rmu_sc0006325.1_g000056 Rmu_sc0010438.1_g000001 Rmu_sc0035741.1_g000001 Rmu_ssc0000366.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142880 Rroxscaffold_3G00248750 Rroxscaffold_5G00378640 Rroxscaffold_5G00382790 Rroxscaffold_7G00190790
rosa_rugosa	Rorug02G0081700 Rorug02G0258300 Rorug06G0170500
rosa_samantha	Rh1CG034700 Rh1DG035400 Rh2AG131100 Rh2AG189600 Rh2AG189700 Rh2BG134500 Rh2BG230100 Rh2BG328200 Rh2CG135300 Rh2DG135900 Rh2DG196000 Rh2DG196100 Rh2DG196200 Rh3DG312100 Rh4CG305000 Rh4DG111800 Rh5AG369300 Rh5AG496200 Rh5AG496300 Rh5BG555300 Rh5CG578200 Rh5DG254100 Rh5DG254200 Rh6BG167500 Rh6BG167600 Rh6BG241100 Rh7AG282200 Rh7CG301400 Rh7CG301500 Rh7DG435700 Rh7DG435800
rosa_wichuraiana	Rw0G008970 Rw2G010150 Rw3G024850 Rw4G013560 Rw5G022800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	464
AciI	CCGC	1 cut(s)	291
AclWI	GGATC	2 cut(s)	14, 583
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	471
AfiI	CCNNNNNNNGG	3 cut(s)	297, 464, 632
AflIII	ACRYGT	1 cut(s)	735
AgsI	TTSAA	2 cut(s)	184, 389
AjnI	CCWGG	1 cut(s)	713
AluBI	AGCT	6 cut(s)	157, 443, 455, 461, 598, 753
AluI	AGCT	6 cut(s)	157, 443, 455, 461, 598, 753
Alw21I	GWGCWC	2 cut(s)	520, 600
AlwI	GGATC	2 cut(s)	14, 583
AlwNI	CAGNNNCTG	1 cut(s)	464
AoxI	GGCC	4 cut(s)	3, 553, 606, 743
AspS9I	GGNCC	3 cut(s)	326, 553, 743
AsuC2I	CCSGG	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	326
AxyI	CCTNAGG	1 cut(s)	630
BaeGI	GKGCMC	1 cut(s)	714
BaeI	ACNNNNGTAYC	2 cut(s)	117, 150
BanII	GRGCYC	1 cut(s)	600
BbsI	GAAGAC	1 cut(s)	382
Bbv12I	GWGCWC	2 cut(s)	520, 600
BciT130I	CCWGG	1 cut(s)	715
BcnI	CCSGG	1 cut(s)	200
BglII	AGATCT	1 cut(s)	340
Bme1390I	CCNGG	2 cut(s)	200, 715
Bme18I	GGWCC	1 cut(s)	326
BmgT120I	GGNCC	3 cut(s)	326, 553, 743
BmiI	GGNNCC	1 cut(s)	13
BmrFI	CCNGG	2 cut(s)	200, 715
BmsI	GCATC	1 cut(s)	691
BpiI	GAAGAC	1 cut(s)	382
BpmI	CTGGAG	1 cut(s)	441
Bpu10I	CCTNAGC	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	584
BpuMI	CCSGG	1 cut(s)	200
BsaJI	CCNNGG	5 cut(s)	161, 427, 579, 713, 714
Bsc4I	CCNNNNNNNGG	3 cut(s)	297, 464, 632
Bse1I	ACTGG	2 cut(s)	469, 724
Bse21I	CCTNAGG	1 cut(s)	630
BseBI	CCWGG	1 cut(s)	715
BseDI	CCNNGG	5 cut(s)	161, 427, 579, 713, 714
BseGI	GGATG	1 cut(s)	171
BseLI	CCNNNNNNNGG	3 cut(s)	297, 464, 632
BseMII	CTCAG	4 cut(s)	198, 533, 663, 740
BseNI	ACTGG	2 cut(s)	469, 724
BseRI	GAGGAG	4 cut(s)	4, 380, 383, 435
BseSI	GKGCMC	1 cut(s)	714
BshFI	GGCC	4 cut(s)	5, 555, 608, 745
BsiHKAI	GWGCWC	2 cut(s)	520, 600
BsiSI	CCGG	2 cut(s)	75, 199
BslFI	GGGAC	1 cut(s)	666
BslI	CCNNNNNNNGG	3 cut(s)	297, 464, 632
BsmFI	GGGAC	1 cut(s)	666
BsnI	GGCC	4 cut(s)	5, 555, 608, 745
Bsp1286I	GDGCHC	3 cut(s)	520, 600, 714
Bsp143I	GATC	5 cut(s)	19, 31, 312, 340, 588
Bsp19I	CCATGG	1 cut(s)	161
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	4 cut(s)	5, 555, 608, 745
BspCNI	CTCAG	4 cut(s)	199, 532, 664, 741
BspLI	GGNNCC	1 cut(s)	13
BspPI	GGATC	2 cut(s)	14, 583
BsrI	ACTGG	2 cut(s)	469, 724
BssECI	CCNNGG	5 cut(s)	161, 427, 579, 713, 714
BssMI	GATC	5 cut(s)	19, 31, 312, 340, 588
BssT1I	CCWWGG	3 cut(s)	161, 427, 579
Bst2UI	CCWGG	1 cut(s)	715
Bst4CI	ACNGT	2 cut(s)	188, 709
BstDEI	CTNAG	9 cut(s)	35, 207, 330, 422, 434, 519, 630, 672, 749
BstDSI	CCRYGG	1 cut(s)	161
BstF5I	GGATG	1 cut(s)	171
BstKTI	GATC	5 cut(s)	22, 34, 315, 343, 591
BstMBI	GATC	5 cut(s)	19, 31, 312, 340, 588
BstMWI	GCNNNNNNNGC	1 cut(s)	154
BstNI	CCWGG	1 cut(s)	715
BstNSI	RCATGY	2 cut(s)	57, 739
BstSCI	CCNGG	2 cut(s)	198, 713
BstSLI	GKGCMC	1 cut(s)	714
BstV2I	GAAGAC	1 cut(s)	382
BstX2I	RGATCY	2 cut(s)	340, 588
BstXI	CCANNNNNNTGG	1 cut(s)	616
BstYI	RGATCY	2 cut(s)	340, 588
Bsu36I	CCTNAGG	1 cut(s)	630
BsuRI	GGCC	4 cut(s)	5, 555, 608, 745
BtgI	CCRYGG	1 cut(s)	161
BtsCI	GGATG	1 cut(s)	171
BtsI	GCAGTG	1 cut(s)	46
BtsIMutI	CAGTG	3 cut(s)	46, 705, 731
CaiI	CAGNNNCTG	1 cut(s)	464
Cfr13I	GGNCC	3 cut(s)	326, 553, 743
CviAII	CATG	5 cut(s)	54, 162, 559, 593, 736
DdeI	CTNAG	9 cut(s)	35, 207, 330, 422, 434, 519, 630, 672, 749
DpnI	GATC	5 cut(s)	21, 33, 314, 342, 590
DpnII	GATC	5 cut(s)	19, 31, 312, 340, 588
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	280
Ecl136II	GAGCTC	1 cut(s)	598
Eco130I	CCWWGG	3 cut(s)	161, 427, 579
Eco24I	GRGCYC	1 cut(s)	600
Eco47I	GGWCC	1 cut(s)	326
Eco53kI	GAGCTC	1 cut(s)	598
Eco57I	CTGAAG	1 cut(s)	471
Eco81I	CCTNAGG	1 cut(s)	630
EcoICRI	GAGCTC	1 cut(s)	598
EcoO109I	RGGNCCY	2 cut(s)	326, 743
EcoRII	CCWGG	1 cut(s)	713
EcoT14I	CCWWGG	3 cut(s)	161, 427, 579
EcoT38I	GRGCYC	1 cut(s)	600
ErhI	CCWWGG	3 cut(s)	161, 427, 579
FaeI	CATG	5 cut(s)	57, 165, 562, 596, 739
FaqI	GGGAC	1 cut(s)	666
FatI	CATG	5 cut(s)	53, 161, 558, 592, 735
FokI	GGATG	1 cut(s)	178
FriOI	GRGCYC	1 cut(s)	600
GsuI	CTGGAG	1 cut(s)	441
HaeIII	GGCC	4 cut(s)	5, 555, 608, 745
HapII	CCGG	2 cut(s)	75, 199
Hin1II	CATG	5 cut(s)	57, 165, 562, 596, 739
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	4 cut(s)	114, 356, 674, 730
HpaII	CCGG	2 cut(s)	75, 199
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	402
Hpy188I	TCNGA	3 cut(s)	19, 679, 750
Hpy188III	TCNNGA	4 cut(s)	29, 111, 449, 601
Hpy8I	GTNNAC	1 cut(s)	402
HpyAV	CCTTC	6 cut(s)	33, 226, 317, 383, 598, 643
HpyCH4III	ACNGT	2 cut(s)	188, 709
HpyF10VI	GCNNNNNNNGC	1 cut(s)	154
HpyF3I	CTNAG	9 cut(s)	35, 207, 330, 422, 434, 519, 630, 672, 749
Hsp92II	CATG	5 cut(s)	57, 165, 562, 596, 739
Kzo9I	GATC	5 cut(s)	19, 31, 312, 340, 588
LmnI	GCTCC	3 cut(s)	17, 448, 460
LweI	GCATC	1 cut(s)	691
MalI	GATC	5 cut(s)	21, 33, 314, 342, 590
MboI	GATC	5 cut(s)	19, 31, 312, 340, 588
MboII	GAAGA	2 cut(s)	332, 387
MflI	RGATCY	2 cut(s)	340, 588
MhlI	GDGCHC	3 cut(s)	520, 600, 714
MluCI	AATT	3 cut(s)	176, 280, 335
MlyI	GAGTC	1 cut(s)	683
MmeI	TCCRAC	2 cut(s)	73, 657
MnlI	CCTC	8 cut(s)	25, 143, 358, 361, 456, 566, 636, 756
MseI	TTAA	2 cut(s)	566, 687
MslI	CAYNNNNRTG	1 cut(s)	614
MspI	CCGG	2 cut(s)	75, 199
MspR9I	CCNGG	2 cut(s)	200, 715
MvaI	CCWGG	1 cut(s)	715
MwoI	GCNNNNNNNGC	1 cut(s)	154
NciI	CCSGG	1 cut(s)	200
NcoI	CCATGG	1 cut(s)	161
NdeII	GATC	5 cut(s)	19, 31, 312, 340, 588
NlaIII	CATG	5 cut(s)	57, 165, 562, 596, 739
NlaIV	GGNNCC	1 cut(s)	13
NspI	RCATGY	2 cut(s)	57, 739
PasI	CCCWGGG	1 cut(s)	714
PciI	ACATGT	1 cut(s)	735
PfeI	GAWTC	3 cut(s)	114, 356, 730
PflFI	GACNNNGTC	1 cut(s)	503
PflMI	CCANNNNNTGG	1 cut(s)	464
PleI	GAGTC	1 cut(s)	682
PpsI	GAGTC	1 cut(s)	682
PpuMI	RGGWCCY	1 cut(s)	326
PscI	ACATGT	1 cut(s)	735
Psp124BI	GAGCTC	1 cut(s)	600
Psp5II	RGGWCCY	1 cut(s)	326
Psp6I	CCWGG	1 cut(s)	713
PspGI	CCWGG	1 cut(s)	713
PspN4I	GGNNCC	1 cut(s)	13
PspPI	GGNCC	3 cut(s)	326, 553, 743
PspPPI	RGGWCCY	1 cut(s)	326
PstNI	CAGNNNCTG	1 cut(s)	464
PsuI	RGATCY	2 cut(s)	340, 588
PsyI	GACNNNGTC	1 cut(s)	503
RseI	CAYNNNNRTG	1 cut(s)	614
SacI	GAGCTC	1 cut(s)	600
SaqAI	TTAA	2 cut(s)	566, 687
Sau3AI	GATC	5 cut(s)	19, 31, 312, 340, 588
Sau96I	GGNCC	3 cut(s)	326, 553, 743
SchI	GAGTC	1 cut(s)	683
ScrFI	CCNGG	2 cut(s)	200, 715
SduI	GDGCHC	3 cut(s)	520, 600, 714
SfaNI	GCATC	1 cut(s)	691
SinI	GGWCC	1 cut(s)	326
SmiMI	CAYNNNNRTG	1 cut(s)	614
SmlI	CTYRAG	1 cut(s)	599
SmoI	CTYRAG	1 cut(s)	599
Sse9I	AATT	3 cut(s)	176, 280, 335
SsiI	CCGC	1 cut(s)	291
SstI	GAGCTC	1 cut(s)	600
StyD4I	CCNGG	2 cut(s)	198, 713
StyI	CCWWGG	3 cut(s)	161, 427, 579
TaaI	ACNGT	2 cut(s)	188, 709
TasI	AATT	3 cut(s)	176, 280, 335
TfiI	GAWTC	3 cut(s)	114, 356, 730
Tru1I	TTAA	2 cut(s)	566, 687
Tru9I	TTAA	2 cut(s)	566, 687
TscAI	CASTG	3 cut(s)	46, 712, 731
TspDTI	ATGAA	2 cut(s)	63, 214
TspRI	CASTG	3 cut(s)	46, 712, 731
Tth111I	GACNNNGTC	1 cut(s)	503
Van91I	CCANNNNNTGG	1 cut(s)	464
VpaK11BI	GGWCC	1 cut(s)	326
XceI	RCATGY	2 cut(s)	57, 739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.