Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000811

Physical Location & Seq

Genomic Coordinates Reverse (-)

29609201 .. 29610174

Gene Structure 974 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG254100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGCTGCTTTGGCATGGTTCTCGGTTTACGAACTTTGTGGGAATACTTAGCCAAGGACTAAGAAAAGCTCCTCCTGAAGCTCCAGCTACTGGTTATATGTTTGGCAAGGGGATTTACTTTGCTGACCTTGTCAGTAAGAGTGCTCAGTATTGCTATACAGATAAGAAAAATCATATGGGCCTCATGCTTTTAAGTGAAGTTTCCTTGGGAGAGATCCATGAGCTCATGAAGGCCACAGTGAGCTCATTTGCATCCCCCCTTATCCTTTCTTTTTCTTCTATCCTTTTCATGTGTGTTTTGATCATTTTGATATTCTGTATATATATTGACATCATGTGTCAACTAATTTTAACTCCCGTAAAATTTTTCAATTTGACCTATGTAAAAAAACAATATACTGGATTCATTAGACTTATTATTTCTTACAACTTTTTCCCACTTAACTTATCTTTATGCATTCTATTGTCATTCAGTATATGGATAAACCTCCTAAGGGAAAGCACTCTAAGAAGGGACTTGGCAAGAAAAAACCTGAGTCGGACTATGTTAAATGGAGACATGATGCCTCTAAGATTCTGTACACTTCGGGTTCTAATTCTTAGAGCCGCTCTAAATAACTGGATATCAACCTTTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0003950 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006464 GO:0006471 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016070 GO:0016740 GO:0016757 GO:0016763 GO:0016874 GO:0016886 GO:0019538 GO:0022616 GO:0033554 GO:0033993 GO:0034641 GO:0034645 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0071704 GO:0090304 GO:0097305 GO:0140097 GO:1901360 GO:1901564 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 map03410 map04210 map04212 map04214 map04217

Pfam Domains

Protein Families

BRCT PADR1 PARP PARP_reg WGR zf-PARP

Protein Analysis

212

Amino Acids

24.27

Weight (kDa)

9.6

Isoelectric Point (pI)

39.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PARP	PF00644	1 - 80	1.7e-36	Poly(ADP-ribose) polymerase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66290 AT5G66290
fragaria_vesca	FvH4_1g12000 FvH4_2g21980
malus_domestica	MD02G1134200.v1.1 MD15G1247200.v1.1
prunus_persica	Prupe.7G166600_v2.0.a1 Prupe.7G166600_v2.0.a1
pyrus_communis	pycom02g10580
rosa_chinensis	RchiOBHm_Chr0c39g0503221 RchiOBHm_Chr1g0353231 RchiOBHm_Chr2g0099641 RchiOBHm_Chr2g0126361 RchiOBHm_Chr5g0080231
rosa_laevigata	RLG00000008117 RLG00000016900 RLG00000021865
rosa_multiflora	Rmu_sc0000394.1_g000010 Rmu_sc0000543.1_g000026 Rmu_sc0005120.1_g000016 Rmu_sc0006325.1_g000056 Rmu_sc0010438.1_g000001 Rmu_sc0035741.1_g000001 Rmu_ssc0000366.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142880 Rroxscaffold_3G00248750 Rroxscaffold_5G00378640 Rroxscaffold_5G00382790 Rroxscaffold_7G00190790
rosa_rugosa	Rorug02G0081700 Rorug02G0258300 Rorug06G0170500
rosa_samantha	Rh1CG034700 Rh1DG035400 Rh2AG131100 Rh2AG189600 Rh2AG189700 Rh2BG134500 Rh2BG230100 Rh2BG328200 Rh2CG135300 Rh2DG135900 Rh2DG196000 Rh2DG196100 Rh2DG196200 Rh3DG312100 Rh4CG305000 Rh4DG111800 Rh5AG369300 Rh5AG496200 Rh5AG496300 Rh5BG555300 Rh5CG578200 Rh5DG254100 Rh5DG254200 Rh6BG167500 Rh6BG167600 Rh6BG241100 Rh7AG282200 Rh7CG301400 Rh7CG301500 Rh7DG435700 Rh7DG435800
rosa_wichuraiana	Rw0G008970 Rw2G010150 Rw3G024850 Rw4G013560 Rw5G022800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	89
AccBSI	CCGCTC	1 cut(s)	608
AciI	CCGC	1 cut(s)	606
AclWI	GGATC	1 cut(s)	208
AcsI	RAATTY	1 cut(s)	362
AcuI	CTGAAG	1 cut(s)	96
AfaI	GTAC	1 cut(s)	580
AfiI	CCNNNNNNNGG	2 cut(s)	89, 493
AgsI	TTSAA	1 cut(s)	370
AluBI	AGCT	5 cut(s)	68, 80, 86, 223, 243
AluI	AGCT	5 cut(s)	68, 80, 86, 223, 243
Alw21I	GWGCWC	3 cut(s)	145, 225, 245
Alw26I	GTCTC	1 cut(s)	549
AlwI	GGATC	1 cut(s)	208
AlwNI	CAGNNNCTG	1 cut(s)	89
AoxI	GGCC	2 cut(s)	178, 231
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	362
AspS9I	GGNCC	1 cut(s)	178
AxyI	CCTNAGG	1 cut(s)	491
BanII	GRGCYC	2 cut(s)	225, 245
Bbv12I	GWGCWC	3 cut(s)	145, 225, 245
BcgI	CGANNNNNNTGC	1 cut(s)	36
BclI	TGATCA	1 cut(s)	300
BcoDI	GTCTC	1 cut(s)	549
BfaI	CTAG	1 cut(s)	637
BisI	GCNGC	2 cut(s)	5, 606
BlsI	GCNGC	2 cut(s)	6, 607
BmgT120I	GGNCC	1 cut(s)	178
BmsI	GCATC	2 cut(s)	260, 552
BpmI	CTGGAG	1 cut(s)	66
BsaJI	CCNNGG	2 cut(s)	52, 204
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 493
Bse1I	ACTGG	3 cut(s)	94, 403, 623
Bse21I	CCTNAGG	1 cut(s)	491
BseDI	CCNNGG	2 cut(s)	52, 204
BseGI	GGATG	1 cut(s)	251
BseLI	CCNNNNNNNGG	2 cut(s)	89, 493
BseMII	CTCAG	2 cut(s)	158, 524
BseNI	ACTGG	3 cut(s)	94, 403, 623
BseRI	GAGGAG	1 cut(s)	60
BshFI	GGCC	2 cut(s)	180, 233
BsiHKAI	GWGCWC	3 cut(s)	145, 225, 245
BslFI	GGGAC	1 cut(s)	527
BslI	CCNNNNNNNGG	2 cut(s)	89, 493
BsmAI	GTCTC	1 cut(s)	549
BsmFI	GGGAC	1 cut(s)	527
BsmI	GAATGC	1 cut(s)	456
BsnI	GGCC	2 cut(s)	180, 233
Bsp1286I	GDGCHC	3 cut(s)	145, 225, 245
Bsp1407I	TGTACA	1 cut(s)	578
Bsp143I	GATC	2 cut(s)	213, 300
BspACI	CCGC	1 cut(s)	606
BspANI	GGCC	2 cut(s)	180, 233
BspCNI	CTCAG	2 cut(s)	157, 525
BspHI	TCATGA	1 cut(s)	225
BspPI	GGATC	1 cut(s)	208
BsrBI	CCGCTC	1 cut(s)	608
BsrGI	TGTACA	1 cut(s)	578
BsrI	ACTGG	3 cut(s)	94, 403, 623
BssECI	CCNNGG	2 cut(s)	52, 204
BssMI	GATC	2 cut(s)	213, 300
BssT1I	CCWWGG	2 cut(s)	52, 204
Bst4CI	ACNGT	1 cut(s)	238
BstAUI	TGTACA	1 cut(s)	578
BstDEI	CTNAG	8 cut(s)	47, 59, 144, 491, 506, 533, 569, 599
BstF5I	GGATG	1 cut(s)	251
BstKTI	GATC	2 cut(s)	216, 303
BstMAI	GTCTC	1 cut(s)	549
BstMBI	GATC	2 cut(s)	213, 300
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
Bsu36I	CCTNAGG	1 cut(s)	491
BsuRI	GGCC	2 cut(s)	180, 233
BtsCI	GGATG	1 cut(s)	251
BtsIMutI	CAGTG	1 cut(s)	243
CaiI	CAGNNNCTG	1 cut(s)	89
CciI	TCATGA	1 cut(s)	225
Cfr13I	GGNCC	1 cut(s)	178
Csp6I	GTAC	1 cut(s)	579
CviAII	CATG	7 cut(s)	14, 184, 218, 226, 289, 334, 559
CviJI	RGCY	9 cut(s)	51, 68, 80, 86, 180, 223, 233, 243, 605
CviKI_1	RGCY	9 cut(s)	51, 68, 80, 86, 180, 223, 233, 243, 605
CviQI	GTAC	1 cut(s)	579
DdeI	CTNAG	8 cut(s)	47, 59, 144, 491, 506, 533, 569, 599
DpnI	GATC	2 cut(s)	215, 302
DpnII	GATC	2 cut(s)	213, 300
Ecl136II	GAGCTC	2 cut(s)	223, 243
Eco130I	CCWWGG	2 cut(s)	52, 204
Eco24I	GRGCYC	2 cut(s)	225, 245
Eco32I	GATATC	1 cut(s)	624
Eco53kI	GAGCTC	2 cut(s)	223, 243
Eco57I	CTGAAG	1 cut(s)	96
Eco81I	CCTNAGG	1 cut(s)	491
EcoICRI	GAGCTC	2 cut(s)	223, 243
EcoRV	GATATC	1 cut(s)	624
EcoT14I	CCWWGG	2 cut(s)	52, 204
EcoT22I	ATGCAT	1 cut(s)	458
EcoT38I	GRGCYC	2 cut(s)	225, 245
ErhI	CCWWGG	2 cut(s)	52, 204
FaeI	CATG	7 cut(s)	17, 187, 221, 229, 292, 337, 562
FaqI	GGGAC	1 cut(s)	527
FatI	CATG	7 cut(s)	13, 183, 217, 225, 288, 333, 558
FauNDI	CATATG	1 cut(s)	174
FbaI	TGATCA	1 cut(s)	300
Fnu4HI	GCNGC	2 cut(s)	5, 606
FokI	GGATG	1 cut(s)	238
FriOI	GRGCYC	2 cut(s)	225, 245
Fsp4HI	GCNGC	2 cut(s)	5, 606
FspBI	CTAG	1 cut(s)	637
GluI	GCNGC	2 cut(s)	5, 606
GsuI	CTGGAG	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	180, 233
Hin1II	CATG	7 cut(s)	17, 187, 221, 229, 292, 337, 562
HincII	GTYRAC	1 cut(s)	341
HindII	GTYRAC	1 cut(s)	341
HinfI	GANTC	3 cut(s)	402, 535, 573
Hpy166II	GTNNAC	3 cut(s)	27, 341, 581
Hpy188I	TCNGA	1 cut(s)	540
Hpy188III	TCNNGA	2 cut(s)	74, 226
Hpy8I	GTNNAC	3 cut(s)	27, 341, 581
HpyAV	CCTTC	2 cut(s)	223, 504
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4V	TGCA	2 cut(s)	251, 456
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	8 cut(s)	47, 59, 144, 491, 506, 533, 569, 599
Hsp92II	CATG	7 cut(s)	17, 187, 221, 229, 292, 337, 562
Ksp22I	TGATCA	1 cut(s)	300
Kzo9I	GATC	2 cut(s)	213, 300
LmnI	GCTCC	2 cut(s)	73, 85
LpnPI	CCDG	6 cut(s)	75, 87, 96, 384, 545, 604
LweI	GCATC	2 cut(s)	260, 552
MaeI	CTAG	1 cut(s)	637
MalI	GATC	2 cut(s)	215, 302
MbiI	CCGCTC	1 cut(s)	608
MboI	GATC	2 cut(s)	213, 300
MboII	GAAGA	1 cut(s)	267
MflI	RGATCY	1 cut(s)	213
MhlI	GDGCHC	3 cut(s)	145, 225, 245
MluCI	AATT	4 cut(s)	345, 362, 370, 594
MlyI	GAGTC	1 cut(s)	544
MmeI	TCCRAC	1 cut(s)	518
MnlI	CCTC	4 cut(s)	81, 191, 497, 576
Mph1103I	ATGCAT	1 cut(s)	458
MseI	TTAA	4 cut(s)	191, 350, 441, 548
Mva1269I	GAATGC	1 cut(s)	456
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeI	CATATG	1 cut(s)	174
NdeII	GATC	2 cut(s)	213, 300
NlaIII	CATG	7 cut(s)	17, 187, 221, 229, 292, 337, 562
NsiI	ATGCAT	1 cut(s)	458
PagI	TCATGA	1 cut(s)	225
PctI	GAATGC	1 cut(s)	456
PfeI	GAWTC	2 cut(s)	402, 573
PflFI	GACNNNGTC	1 cut(s)	128
PflMI	CCANNNNNTGG	1 cut(s)	89
PkrI	GCNGC	2 cut(s)	6, 607
PleI	GAGTC	1 cut(s)	543
PpsI	GAGTC	1 cut(s)	543
Psp124BI	GAGCTC	2 cut(s)	225, 245
PspPI	GGNCC	1 cut(s)	178
PstNI	CAGNNNCTG	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	213
PsyI	GACNNNGTC	1 cut(s)	128
RsaI	GTAC	1 cut(s)	580
RsaNI	GTAC	1 cut(s)	579
SacI	GAGCTC	2 cut(s)	225, 245
SaqAI	TTAA	4 cut(s)	191, 350, 441, 548
SatI	GCNGC	2 cut(s)	5, 606
Sau3AI	GATC	2 cut(s)	213, 300
Sau96I	GGNCC	1 cut(s)	178
SchI	GAGTC	1 cut(s)	544
SduI	GDGCHC	3 cut(s)	145, 225, 245
SfaNI	GCATC	2 cut(s)	260, 552
Sse9I	AATT	4 cut(s)	345, 362, 370, 594
SsiI	CCGC	1 cut(s)	606
SspMI	CTAG	1 cut(s)	637
SstI	GAGCTC	2 cut(s)	225, 245
StyI	CCWWGG	2 cut(s)	52, 204
TaaI	ACNGT	1 cut(s)	238
TasI	AATT	4 cut(s)	345, 362, 370, 594
TatI	WGTACW	1 cut(s)	578
TauI	GCSGC	1 cut(s)	608
TfiI	GAWTC	2 cut(s)	402, 573
Tru1I	TTAA	4 cut(s)	191, 350, 441, 548
Tru9I	TTAA	4 cut(s)	191, 350, 441, 548
TscAI	CASTG	1 cut(s)	243
TseI	GCWGC	1 cut(s)	4
TspDTI	ATGAA	3 cut(s)	242, 277, 394
TspRI	CASTG	1 cut(s)	243
Tth111I	GACNNNGTC	1 cut(s)	128
Van91I	CCANNNNNTGG	1 cut(s)	89
XapI	RAATTY	1 cut(s)	362
XspI	CTAG	1 cut(s)	637
Zsp2I	ATGCAT	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.