Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000811

Physical Location & Seq

Genomic Coordinates Reverse (-)

17524276 .. 17528433

Gene Structure 4158 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG111800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCTAAAGACGACACCCGACTATCATCATCTGCACTCCCTTTTTCAGGCTTGCTCCGCCACTTGGATTTGGGTGCTGATTTTGGAAGAAGGACCGAAGCAACTAGATCTTGCGTTCTTGGAATCAAAAGAGGAGGACAGAAGACTTTTGATTGAAGGTTCTCGGTTTACGAACTTTGTGGGAATACTTAGCCAAGGACTAAGAATAGCTCCTCCTGAAGCTCCAGCTACTGGTTATATGTTTGGCAAGGGGATTTACTTTGCTGACCTTGTCAGTAAGAGTGCTCAGTATTTTGCAGGTATTGTGGATCCGAAAATGTTACTGGAACTCTTCTCGATGTACCGTGAGTGGCAGGAGGAGAATGTCAAAAAGCTGAGCCAAAAACAGAGATCCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0003950 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006464 GO:0006471 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016070 GO:0016740 GO:0016757 GO:0016763 GO:0016874 GO:0016886 GO:0019538 GO:0022616 GO:0033554 GO:0033993 GO:0034641 GO:0034645 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0071704 GO:0090304 GO:0097305 GO:0140097 GO:1901360 GO:1901564 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 map03410 map04210 map04212 map04214 map04217

Pfam Domains

Protein Families

BRCT PADR1 PARP PARP_reg WGR zf-PARP

Protein Analysis

132

Amino Acids

15.2

Weight (kDa)

6.29

Isoelectric Point (pI)

46.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PARP	PF00644	42 - 98	2.7e-23	Poly(ADP-ribose) polymerase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66290 AT5G66290
fragaria_vesca	FvH4_1g12000 FvH4_2g21980
malus_domestica	MD02G1134200.v1.1 MD15G1247200.v1.1
prunus_persica	Prupe.7G166600_v2.0.a1 Prupe.7G166600_v2.0.a1
pyrus_communis	pycom02g10580
rosa_chinensis	RchiOBHm_Chr0c39g0503221 RchiOBHm_Chr1g0353231 RchiOBHm_Chr2g0099641 RchiOBHm_Chr2g0126361 RchiOBHm_Chr5g0080231
rosa_laevigata	RLG00000008117 RLG00000016900 RLG00000021865
rosa_multiflora	Rmu_sc0000394.1_g000010 Rmu_sc0000543.1_g000026 Rmu_sc0005120.1_g000016 Rmu_sc0006325.1_g000056 Rmu_sc0010438.1_g000001 Rmu_sc0035741.1_g000001 Rmu_ssc0000366.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142880 Rroxscaffold_3G00248750 Rroxscaffold_5G00378640 Rroxscaffold_5G00382790 Rroxscaffold_7G00190790
rosa_rugosa	Rorug02G0081700 Rorug02G0258300 Rorug06G0170500
rosa_samantha	Rh1CG034700 Rh1DG035400 Rh2AG131100 Rh2AG189600 Rh2AG189700 Rh2BG134500 Rh2BG230100 Rh2BG328200 Rh2CG135300 Rh2DG135900 Rh2DG196000 Rh2DG196100 Rh2DG196200 Rh3DG312100 Rh4CG305000 Rh4DG111800 Rh5AG369300 Rh5AG496200 Rh5AG496300 Rh5BG555300 Rh5CG578200 Rh5DG254100 Rh5DG254200 Rh6BG167500 Rh6BG167600 Rh6BG241100 Rh7AG282200 Rh7CG301400 Rh7CG301500 Rh7DG435700 Rh7DG435800
rosa_wichuraiana	Rw0G008970 Rw2G010150 Rw3G024850 Rw4G013560 Rw5G022800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	287
AccB7I	CCANNNNNTGG	1 cut(s)	230
AciI	CCGC	1 cut(s)	57
AclWI	GGATC	3 cut(s)	302, 315, 384
AcuI	CTGAAG	1 cut(s)	237
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	3 cut(s)	46, 63, 230
AgsI	TTSAA	1 cut(s)	155
AluBI	AGCT	4 cut(s)	209, 221, 227, 373
AluI	AGCT	4 cut(s)	209, 221, 227, 373
Alw21I	GWGCWC	1 cut(s)	286
AlwI	GGATC	3 cut(s)	302, 315, 384
AlwNI	CAGNNNCTG	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	92
BamHI	GGATCC	1 cut(s)	307
BbsI	GAAGAC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	286
BfaI	CTAG	1 cut(s)	104
BfuAI	ACCTGC	1 cut(s)	287
BglII	AGATCT	1 cut(s)	106
BlpI	GCTNAGC	1 cut(s)	374
Bme18I	GGWCC	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	92
BmiI	GGNNCC	1 cut(s)	309
BpiI	GAAGAC	1 cut(s)	148
BpmI	CTGGAG	1 cut(s)	207
Bpu1102I	GCTNAGC	1 cut(s)	374
BsaJI	CCNNGG	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 63, 230
Bse1I	ACTGG	2 cut(s)	235, 327
BseDI	CCNNGG	1 cut(s)	193
BseLI	CCNNNNNNNGG	3 cut(s)	46, 63, 230
BseMII	CTCAG	2 cut(s)	299, 365
BseNI	ACTGG	2 cut(s)	235, 327
BseRI	GAGGAG	3 cut(s)	146, 201, 371
BsgI	GTGCAG	1 cut(s)	17
BsiHKAI	GWGCWC	1 cut(s)	286
BslI	CCNNNNNNNGG	3 cut(s)	46, 63, 230
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp143I	GATC	3 cut(s)	106, 307, 389
Bsp1720I	GCTNAGC	1 cut(s)	374
BspACI	CCGC	1 cut(s)	57
BspCNI	CTCAG	2 cut(s)	298, 366
BspLI	GGNNCC	1 cut(s)	309
BspMI	ACCTGC	1 cut(s)	287
BspPI	GGATC	3 cut(s)	302, 315, 384
BsrI	ACTGG	2 cut(s)	235, 327
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	3 cut(s)	106, 307, 389
BssT1I	CCWWGG	1 cut(s)	193
Bst4CI	ACNGT	1 cut(s)	344
Bst6I	CTCTTC	1 cut(s)	335
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	4 cut(s)	188, 200, 285, 374
BstENI	CCTNNNNNAGG	1 cut(s)	44
BstKTI	GATC	3 cut(s)	109, 310, 392
BstMBI	GATC	3 cut(s)	106, 307, 389
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstV2I	GAAGAC	1 cut(s)	148
BstX2I	RGATCY	3 cut(s)	106, 307, 389
BstYI	RGATCY	3 cut(s)	106, 307, 389
BveI	ACCTGC	1 cut(s)	287
Cac8I	GCNNGC	1 cut(s)	52
CaiI	CAGNNNCTG	1 cut(s)	230
Cfr13I	GGNCC	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	340
CviJI	RGCY	7 cut(s)	50, 192, 209, 221, 227, 373, 378
CviKI_1	RGCY	7 cut(s)	50, 192, 209, 221, 227, 373, 378
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	4 cut(s)	188, 200, 285, 374
DpnI	GATC	3 cut(s)	108, 309, 391
DpnII	GATC	3 cut(s)	106, 307, 389
Eam1104I	CTCTTC	1 cut(s)	335
EarI	CTCTTC	1 cut(s)	335
EciI	GGCGGA	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	237
EcoNI	CCTNNNNNAGG	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	193
FaiI	YATR	2 cut(s)	237, 239
FspBI	CTAG	1 cut(s)	104
GsuI	CTGGAG	1 cut(s)	207
HinfI	GANTC	1 cut(s)	122
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188I	TCNGA	1 cut(s)	312
Hpy188III	TCNNGA	2 cut(s)	215, 334
Hpy8I	GTNNAC	1 cut(s)	168
HpyAV	CCTTC	2 cut(s)	83, 149
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4V	TGCA	2 cut(s)	34, 296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	4 cut(s)	188, 200, 285, 374
Kzo9I	GATC	3 cut(s)	106, 307, 389
LmnI	GCTCC	3 cut(s)	59, 214, 226
LpnPI	CCDG	7 cut(s)	32, 216, 228, 237, 282, 308, 338
MaeI	CTAG	1 cut(s)	104
MaeIII	GTNAC	1 cut(s)	318
MalI	GATC	3 cut(s)	108, 309, 391
MboI	GATC	3 cut(s)	106, 307, 389
MboII	GAAGA	3 cut(s)	98, 153, 322
MflI	RGATCY	3 cut(s)	106, 307, 389
MhlI	GDGCHC	1 cut(s)	286
MnlI	CCTC	4 cut(s)	124, 127, 222, 349
MwoI	GCNNNNNNNGC	1 cut(s)	56
NdeII	GATC	3 cut(s)	106, 307, 389
NlaIV	GGNNCC	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	122
PflFI	GACNNNGTC	1 cut(s)	269
PflMI	CCANNNNNTGG	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	1 cut(s)	92
PstNI	CAGNNNCTG	1 cut(s)	230
PsuI	RGATCY	3 cut(s)	106, 307, 389
PsyI	GACNNNGTC	1 cut(s)	269
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
Sau3AI	GATC	3 cut(s)	106, 307, 389
Sau96I	GGNCC	1 cut(s)	92
SduI	GDGCHC	1 cut(s)	286
SetI	ASST	7 cut(s)	160, 211, 223, 229, 270, 301, 375
SinI	GGWCC	1 cut(s)	92
SsiI	CCGC	1 cut(s)	57
SspMI	CTAG	1 cut(s)	104
StyI	CCWWGG	1 cut(s)	193
TaaI	ACNGT	1 cut(s)	344
TaqI	TCGA	1 cut(s)	335
TaqII	GACCGA	1 cut(s)	109
TfiI	GAWTC	1 cut(s)	122
Tth111I	GACNNNGTC	1 cut(s)	269
Van91I	CCANNNNNTGG	1 cut(s)	230
VpaK11BI	GGWCC	1 cut(s)	92
XagI	CCTNNNNNAGG	1 cut(s)	44
XspI	CTAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.