Rh1CG034700

Long chain base biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000811
Physical Location & Seq
Forward (+)
6615156 .. 6618197
3042 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG034700.1

Sequence Viewer

Length: 634 bp
ATGGGCTACGGACATCTCTATGTAGAAGTACTTCTTTTTGCAGTCATTGTTTTTCTATTCTCCCTGAAAAGTTACAAGCCCCCTAAGGAGCCTTTAACAGAGAAGGAAATAGATGATCTATGTGAGGAGTGGGTTCCTGAACCTCTCATTCCTCCTATCACAGAAGATATGCAGTATGAACCCCCAGTGTTGGAAAGTGCTGCAGGGCCACATACAATAGTCAATGGCAAAGAAGTAGTGAACTTTGCTTCAGCAAATTATCTTGGATTGATAGGACATGAGAAGTTGCTTTCGATGCCATTACTGACTTCACCCCCAAGTGAGGGTAGCTTGACTGACATTTTAGTGAGGAAACCTTCGTCTTCTTCAGCTCCCAGTATTGTGGATCCGAAAGTGTTACTGGAACTCTTCTCGATGTACCGTGAGTGGCAGGAGGAGAATGTCAAAAAACTGAGCCAAAAACAGGAAGAGATAGAGAACAAGATAGAAATTGCAGACGCGTTGTCTGTTAAACTTAAGCAACGATCTTTTGCTTTAACAGATGTTGATGGACCTACTGTATGGATAAATGAGTTGTACACCTTTGTAAAATTAACCTATACATTGAAACATGGACACAGTTCATGCACTGCAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0002178 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010154 GO:0010506 GO:0010508 GO:0010941 GO:0012505 GO:0016020 GO:0016049 GO:0016239 GO:0016241 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0022414 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0035339 GO:0040007 GO:0042175 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138
Pfam Domains
Protein Families
Aminotran_1_2

Protein Analysis

211

Amino Acids

23.67

Weight (kDa)

4.93

Isoelectric Point (pI)

44.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 500
AclWI GGATC 2 cut(s) 380, 393
AcuI CTGAAG 2 cut(s) 234, 351
AfaI GTAC 3 cut(s) 30, 419, 578
AfiI CCNNNNNNNGG 4 cut(s) 190, 322, 323, 463
AflII CTTAAG 1 cut(s) 515
AflIII ACRYGT 1 cut(s) 498
AgsI TTSAA 1 cut(s) 607
AhdI GACNNNNNGTC 1 cut(s) 502
AluBI AGCT 2 cut(s) 330, 371
AluI AGCT 2 cut(s) 330, 371
AlwI GGATC 2 cut(s) 380, 393
AoxI GGCC 1 cut(s) 206
ApeKI GCWGC 1 cut(s) 200
Asp700I GAANNNNTTC 1 cut(s) 30
AspS9I GGNCC 2 cut(s) 206, 551
AsuHPI GGTGA 1 cut(s) 303
AvaII GGWCC 1 cut(s) 551
AxyI CCTNAGG 1 cut(s) 84
BamHI GGATCC 1 cut(s) 385
BarI GAAGNNNNNNTAC 2 cut(s) 15, 47
BbsI GAAGAC 1 cut(s) 354
BbvI GCAGC 1 cut(s) 187
BccI CCATC 1 cut(s) 542
BfmI CTRYAG 2 cut(s) 201, 630
BfrI CTTAAG 1 cut(s) 515
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
BmcAI AGTACT 1 cut(s) 30
Bme18I GGWCC 1 cut(s) 551
BmeRI GACNNNNNGTC 1 cut(s) 502
BmgT120I GGNCC 2 cut(s) 206, 551
BmiI GGNNCC 3 cut(s) 90, 135, 387
BmrI ACTGGG 2 cut(s) 179, 369
BmsI GCATC 1 cut(s) 285
BmuI ACTGGG 2 cut(s) 179, 369
BpiI GAAGAC 1 cut(s) 354
Bsc4I CCNNNNNNNGG 4 cut(s) 190, 322, 323, 463
Bse1I ACTGG 3 cut(s) 185, 375, 405
Bse21I CCTNAGG 1 cut(s) 84
BseLI CCNNNNNNNGG 4 cut(s) 190, 322, 323, 463
BseMII CTCAG 1 cut(s) 443
BseNI ACTGG 3 cut(s) 185, 375, 405
BseRI GAGGAG 2 cut(s) 140, 449
BseXI GCAGC 1 cut(s) 187
Bsh1236I CGCG 1 cut(s) 500
BshFI GGCC 1 cut(s) 208
BslI CCNNNNNNNGG 4 cut(s) 190, 322, 323, 463
BsnI GGCC 1 cut(s) 208
Bsp1407I TGTACA 1 cut(s) 576
Bsp143I GATC 3 cut(s) 115, 385, 524
BspANI GGCC 1 cut(s) 208
BspCNI CTCAG 1 cut(s) 444
BspFNI CGCG 1 cut(s) 500
BspLI GGNNCC 3 cut(s) 90, 135, 387
BspMAI CTGCAG 2 cut(s) 205, 634
BspPI GGATC 2 cut(s) 380, 393
BspTI CTTAAG 1 cut(s) 515
BsrGI TGTACA 1 cut(s) 576
BsrI ACTGG 3 cut(s) 185, 375, 405
BssMI GATC 3 cut(s) 115, 385, 524
Bst4CI ACNGT 3 cut(s) 422, 559, 620
Bst6I CTCTTC 2 cut(s) 413, 462
BstAFI CTTAAG 1 cut(s) 515
BstAUI TGTACA 1 cut(s) 576
BstDEI CTNAG 2 cut(s) 84, 452
BstFNI CGCG 1 cut(s) 500
BstKTI GATC 3 cut(s) 118, 388, 527
BstMBI GATC 3 cut(s) 115, 385, 524
BstMWI GCNNNNNNNGC 1 cut(s) 295
BstSFI CTRYAG 2 cut(s) 201, 630
BstUI CGCG 1 cut(s) 500
BstV1I GCAGC 1 cut(s) 187
BstV2I GAAGAC 1 cut(s) 354
BstX2I RGATCY 1 cut(s) 385
BstXI CCANNNNNNTGG 1 cut(s) 382
BstYI RGATCY 1 cut(s) 385
Bsu36I CCTNAGG 1 cut(s) 84
BsuRI GGCC 1 cut(s) 208
BtsI GCAGTG 1 cut(s) 627
BtsIMutI CAGTG 2 cut(s) 192, 627
Cfr13I GGNCC 2 cut(s) 206, 551
CseI GACGC 1 cut(s) 506
Csp6I GTAC 3 cut(s) 29, 418, 577
CviAII CATG 3 cut(s) 278, 611, 624
CviJI RGCY 7 cut(s) 6, 79, 91, 208, 330, 371, 456
CviKI_1 RGCY 7 cut(s) 6, 79, 91, 208, 330, 371, 456
CviQI GTAC 3 cut(s) 29, 418, 577
DdeI CTNAG 2 cut(s) 84, 452
DpnI GATC 3 cut(s) 117, 387, 526
DpnII GATC 3 cut(s) 115, 385, 524
DriI GACNNNNNGTC 1 cut(s) 502
Eam1104I CTCTTC 2 cut(s) 413, 462
Eam1105I GACNNNNNGTC 1 cut(s) 502
EarI CTCTTC 2 cut(s) 413, 462
Eco47I GGWCC 1 cut(s) 551
Eco57I CTGAAG 2 cut(s) 234, 351
Eco81I CCTNAGG 1 cut(s) 84
FaeI CATG 3 cut(s) 281, 614, 627
FalI AAGNNNNNCTT 2 cut(s) 18, 50
FatI CATG 3 cut(s) 277, 610, 623
Fnu4HI GCNGC 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 201
GluI GCNGC 1 cut(s) 201
HaeIII GGCC 1 cut(s) 208
HgaI GACGC 1 cut(s) 506
Hin1II CATG 3 cut(s) 281, 614, 627
HphI GGTGA 1 cut(s) 303
Hpy166II GTNNAC 2 cut(s) 241, 579
Hpy188I TCNGA 1 cut(s) 390
Hpy188III TCNNGA 2 cut(s) 137, 412
Hpy8I GTNNAC 2 cut(s) 241, 579
HpyAV CCTTC 2 cut(s) 97, 366
HpyCH4III ACNGT 3 cut(s) 422, 559, 620
HpyCH4V TGCA 6 cut(s) 41, 172, 203, 494, 627, 632
HpyF10VI GCNNNNNNNGC 1 cut(s) 295
HpyF3I CTNAG 2 cut(s) 84, 452
Hsp92II CATG 3 cut(s) 281, 614, 627
Kzo9I GATC 3 cut(s) 115, 385, 524
LmnI GCTCC 2 cut(s) 88, 376
LpnPI CCDG 8 cut(s) 77, 150, 189, 198, 386, 388, 416, 449
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 1 cut(s) 285
MaeIII GTNAC 2 cut(s) 71, 396
MalI GATC 3 cut(s) 117, 387, 526
MboI GATC 3 cut(s) 115, 385, 524
MboII GAAGA 5 cut(s) 176, 354, 357, 400, 479
MflI RGATCY 1 cut(s) 385
MluCI AATT 3 cut(s) 256, 489, 590
MluI ACGCGT 1 cut(s) 498
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 6 cut(s) 118, 153, 162, 316, 342, 427
MroXI GAANNNNTTC 1 cut(s) 30
MseI TTAA 5 cut(s) 95, 510, 516, 536, 593
MslI CAYNNNNRTG 2 cut(s) 18, 344
MspCI CTTAAG 1 cut(s) 515
MvnI CGCG 1 cut(s) 500
MwoI GCNNNNNNNGC 1 cut(s) 295
NdeII GATC 3 cut(s) 115, 385, 524
NlaIII CATG 3 cut(s) 281, 614, 627
NlaIV GGNNCC 3 cut(s) 90, 135, 387
PdmI GAANNNNTTC 1 cut(s) 30
PkrI GCNGC 1 cut(s) 202
PspN4I GGNNCC 3 cut(s) 90, 135, 387
PspPI GGNCC 2 cut(s) 206, 551
PstI CTGCAG 2 cut(s) 205, 634
PsuI RGATCY 1 cut(s) 385
RsaI GTAC 3 cut(s) 30, 419, 578
RsaNI GTAC 3 cut(s) 29, 418, 577
RseI CAYNNNNRTG 2 cut(s) 18, 344
SaqAI TTAA 5 cut(s) 95, 510, 516, 536, 593
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 3 cut(s) 115, 385, 524
Sau96I GGNCC 2 cut(s) 206, 551
ScaI AGTACT 1 cut(s) 30
SetI ASST 7 cut(s) 145, 332, 358, 373, 556, 584, 599
SfaNI GCATC 1 cut(s) 285
SfcI CTRYAG 2 cut(s) 201, 630
SinI GGWCC 1 cut(s) 551
SmiMI CAYNNNNRTG 2 cut(s) 18, 344
SmlI CTYRAG 1 cut(s) 515
SmoI CTYRAG 1 cut(s) 515
Sse9I AATT 3 cut(s) 256, 489, 590
TaaI ACNGT 3 cut(s) 422, 559, 620
TaqI TCGA 2 cut(s) 293, 413
TasI AATT 3 cut(s) 256, 489, 590
TatI WGTACW 2 cut(s) 28, 576
Tru1I TTAA 5 cut(s) 95, 510, 516, 536, 593
Tru9I TTAA 5 cut(s) 95, 510, 516, 536, 593
TscAI CASTG 2 cut(s) 192, 634
TseI GCWGC 1 cut(s) 200
TspDTI ATGAA 2 cut(s) 192, 612
TspGWI ACGGA 1 cut(s) 24
TspRI CASTG 2 cut(s) 192, 634
Vha464I CTTAAG 1 cut(s) 515
VpaK11BI GGWCC 1 cut(s) 551
XmnI GAANNNNTTC 1 cut(s) 30
ZrmI AGTACT 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.