Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000811

Physical Location & Seq

Genomic Coordinates Reverse (-)

82035566 .. 82051622

Gene Structure 16057 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG578200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGATCACAGCGGCGACCAGGATTCTGAAGCTGCTGCTGGTGCGCGAGGTCGCCGTGTACAAAACCCCGCCACGGTCGACATCCGGCAGTCGACGCCATTACTGACTTCACCCCCAAGTGAGGGTAGCTTGACTGACATTTTAGTGAGGAAACCTTCATCTTCTTCAGCTCCCAGTATTGTGGATCCGAAAGTGTTACTGGAACTCTTCTCGATGTACCGTGAGTGGCAGGAGGAGAATGTCAAAAAGCTGAGCCAAAAACAGGAAGAGATAGAGAACAAGATAGAAATTGCGGACGCGTTGTCTGTTAAACTTAAGCAACGTTTTAATTATTCAGTGACAGCAATGAAGACATCCTCGCAACATTTATGTGGAGAATGGACTCTATATGAGCAGGTTGCACTTACAGCCTTGGACTGCCAGTGTCTTGATGTTGCAAAGGACCTCATCAAGCTTTTACGAAAGGCATTTCCAGAGAGTAAAAGAGTAATACATAACAGAAGGCTAGCTATGGCAAGGGCTCAAGGCGATACTTCAGGGGCCATTGAATGGCTTAATAAATATCTTGAAATATTTATGGCCGATAATGATGTTTGGAGAGAGCTCGTAGAAATCTATGTCTCGTTGCAAATGCACAAGCAAGCTGCATTCTGCTATGAGGAGATGATATTGGCACAGCCTAATGTTCCCCTCTACCACTTAGCTTATGCTAATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19

Protein Analysis

239

Amino Acids

27.09

Weight (kDa)

5.8

Isoelectric Point (pI)

58.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_EMC2	PF22890	161 - 238	9.6e-37	EMC2 TPR-like repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66290 AT5G66290
fragaria_vesca	FvH4_1g12000 FvH4_2g21980
malus_domestica	MD02G1134200.v1.1 MD15G1247200.v1.1
prunus_persica	Prupe.7G166600_v2.0.a1 Prupe.7G166600_v2.0.a1
pyrus_communis	pycom02g10580
rosa_chinensis	RchiOBHm_Chr0c39g0503221 RchiOBHm_Chr1g0353231 RchiOBHm_Chr2g0099641 RchiOBHm_Chr2g0126361 RchiOBHm_Chr5g0080231
rosa_laevigata	RLG00000008117 RLG00000016900 RLG00000021865
rosa_multiflora	Rmu_sc0000394.1_g000010 Rmu_sc0000543.1_g000026 Rmu_sc0005120.1_g000016 Rmu_sc0006325.1_g000056 Rmu_sc0010438.1_g000001 Rmu_sc0035741.1_g000001 Rmu_ssc0000366.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142880 Rroxscaffold_3G00248750 Rroxscaffold_5G00378640 Rroxscaffold_5G00382790 Rroxscaffold_7G00190790
rosa_rugosa	Rorug02G0081700 Rorug02G0258300 Rorug06G0170500
rosa_samantha	Rh1CG034700 Rh1DG035400 Rh2AG131100 Rh2AG189600 Rh2AG189700 Rh2BG134500 Rh2BG230100 Rh2BG328200 Rh2CG135300 Rh2DG135900 Rh2DG196000 Rh2DG196100 Rh2DG196200 Rh3DG312100 Rh4CG305000 Rh4DG111800 Rh5AG369300 Rh5AG496200 Rh5AG496300 Rh5BG555300 Rh5CG578200 Rh5DG254100 Rh5DG254200 Rh6BG167500 Rh6BG167600 Rh6BG241100 Rh7AG282200 Rh7CG301400 Rh7CG301500 Rh7DG435700 Rh7DG435800
rosa_wichuraiana	Rw0G008970 Rw2G010150 Rw3G024850 Rw4G013560 Rw5G022800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	385
AccB7I	CCANNNNNTGG	1 cut(s)	549
AccI	GTMKAC	2 cut(s)	78, 92
AccII	CGCG	2 cut(s)	46, 299
AciI	CCGC	3 cut(s)	12, 69, 293
AclI	AACGTT	1 cut(s)	322
AclWI	GGATC	3 cut(s)	12, 179, 192
AcoI	YGGCCR	1 cut(s)	579
AcuI	CTGAAG	3 cut(s)	48, 150, 519
AcyI	GRCGYC	1 cut(s)	95
AfaI	GTAC	2 cut(s)	60, 218
AfiI	CCNNNNNNNGG	5 cut(s)	73, 121, 122, 262, 549
AflII	CTTAAG	1 cut(s)	314
AflIII	ACRYGT	1 cut(s)	297
AgsI	TTSAA	2 cut(s)	548, 569
AhdI	GACNNNNNGTC	1 cut(s)	301
AjnI	CCWGG	1 cut(s)	18
AluBI	AGCT	9 cut(s)	32, 129, 170, 250, 454, 509, 604, 644, 704
AluI	AGCT	9 cut(s)	32, 129, 170, 250, 454, 509, 604, 644, 704
Alw21I	GWGCWC	1 cut(s)	606
Alw26I	GTCTC	1 cut(s)	625
AlwI	GGATC	3 cut(s)	12, 179, 192
AoxI	GGCC	2 cut(s)	540, 579
ApeKI	GCWGC	3 cut(s)	32, 35, 644
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	2 cut(s)	442, 540
AsuHPI	GGTGA	1 cut(s)	102
AsuNHI	GCTAGC	1 cut(s)	505
AvaII	GGWCC	1 cut(s)	442
BamHI	GGATCC	1 cut(s)	184
BanII	GRGCYC	2 cut(s)	523, 606
BbsI	GAAGAC	1 cut(s)	356
Bbv12I	GWGCWC	1 cut(s)	606
BbvI	GCAGC	3 cut(s)	19, 22, 631
BceAI	ACGGC	1 cut(s)	39
BciT130I	CCWGG	1 cut(s)	20
BcoDI	GTCTC	1 cut(s)	625
BfaI	CTAG	1 cut(s)	506
BfrI	CTTAAG	1 cut(s)	314
BfuAI	ACCTGC	1 cut(s)	385
BisI	GCNGC	4 cut(s)	13, 33, 36, 645
BlpI	GCTNAGC	1 cut(s)	251
BlsI	GCNGC	4 cut(s)	14, 34, 37, 646
Bme1390I	CCNGG	1 cut(s)	20
Bme18I	GGWCC	1 cut(s)	442
BmeRI	GACNNNNNGTC	1 cut(s)	301
BmgT120I	GGNCC	2 cut(s)	442, 540
BmiI	GGNNCC	2 cut(s)	186, 541
BmrFI	CCNGG	1 cut(s)	20
BmrI	ACTGGG	1 cut(s)	168
BmtI	GCTAGC	1 cut(s)	509
BmuI	ACTGGG	1 cut(s)	168
BpiI	GAAGAC	1 cut(s)	356
Bpu1102I	GCTNAGC	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	507
BsaHI	GRCGYC	1 cut(s)	95
BsaJI	CCNNGG	2 cut(s)	72, 411
Bsc4I	CCNNNNNNNGG	5 cut(s)	73, 121, 122, 262, 549
Bse1I	ACTGG	3 cut(s)	174, 204, 421
Bse3DI	GCAATG	1 cut(s)	351
BseBI	CCWGG	1 cut(s)	20
BseDI	CCNNGG	2 cut(s)	72, 411
BseGI	GGATG	2 cut(s)	81, 353
BseLI	CCNNNNNNNGG	5 cut(s)	73, 121, 122, 262, 549
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	1 cut(s)	242
BseNI	ACTGG	3 cut(s)	174, 204, 421
BseRI	GAGGAG	2 cut(s)	248, 674
BseXI	GCAGC	3 cut(s)	19, 22, 631
Bsh1236I	CGCG	2 cut(s)	46, 299
Bsh1285I	CGRYCG	1 cut(s)	78
BshFI	GGCC	2 cut(s)	542, 581
BsiEI	CGRYCG	1 cut(s)	78
BsiHKAI	GWGCWC	1 cut(s)	606
BsiSI	CCGG	1 cut(s)	85
BslI	CCNNNNNNNGG	5 cut(s)	73, 121, 122, 262, 549
BsmAI	GTCTC	1 cut(s)	625
BsmI	GAATGC	1 cut(s)	647
BsnI	GGCC	2 cut(s)	542, 581
Bsp1286I	GDGCHC	2 cut(s)	523, 606
Bsp1407I	TGTACA	1 cut(s)	58
Bsp143I	GATC	2 cut(s)	4, 184
Bsp1720I	GCTNAGC	1 cut(s)	251
BspACI	CCGC	3 cut(s)	12, 69, 293
BspANI	GGCC	2 cut(s)	542, 581
BspCNI	CTCAG	1 cut(s)	243
BspFNI	CGCG	2 cut(s)	46, 299
BspLI	GGNNCC	2 cut(s)	186, 541
BspMI	ACCTGC	1 cut(s)	385
BspOI	GCTAGC	1 cut(s)	509
BspPI	GGATC	3 cut(s)	12, 179, 192
BspTI	CTTAAG	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	351
BsrGI	TGTACA	1 cut(s)	58
BsrI	ACTGG	3 cut(s)	174, 204, 421
BssECI	CCNNGG	2 cut(s)	72, 411
BssMI	GATC	2 cut(s)	4, 184
BssNI	GRCGYC	1 cut(s)	95
BssT1I	CCWWGG	1 cut(s)	411
Bst2UI	CCWGG	1 cut(s)	20
Bst4CI	ACNGT	2 cut(s)	76, 221
Bst6I	CTCTTC	2 cut(s)	212, 261
BstACI	GRCGYC	1 cut(s)	95
BstAFI	CTTAAG	1 cut(s)	314
BstAUI	TGTACA	1 cut(s)	58
BstC8I	GCNNGC	2 cut(s)	507, 642
BstDEI	CTNAG	2 cut(s)	251, 700
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	2 cut(s)	81, 353
BstFNI	CGCG	2 cut(s)	46, 299
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	2 cut(s)	7, 187
BstMAI	GTCTC	1 cut(s)	625
BstMBI	GATC	2 cut(s)	4, 184
BstMCI	CGRYCG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 94, 407
BstNI	CCWGG	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	18
BstUI	CGCG	2 cut(s)	46, 299
BstV1I	GCAGC	3 cut(s)	19, 22, 631
BstV2I	GAAGAC	1 cut(s)	356
BstX2I	RGATCY	1 cut(s)	184
BstXI	CCANNNNNNTGG	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	542, 581
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	2 cut(s)	81, 353
BtsIMutI	CAGTG	2 cut(s)	342, 428
BveI	ACCTGC	1 cut(s)	385
Cac8I	GCNNGC	2 cut(s)	507, 642
CfoI	GCGC	1 cut(s)	46
Cfr13I	GGNCC	2 cut(s)	442, 540
CseI	GACGC	2 cut(s)	103, 305
Csp6I	GTAC	2 cut(s)	59, 217
CviQI	GTAC	2 cut(s)	59, 217
DdeI	CTNAG	2 cut(s)	251, 700
DpnI	GATC	2 cut(s)	6, 186
DpnII	GATC	2 cut(s)	4, 184
DriI	GACNNNNNGTC	1 cut(s)	301
EaeI	YGGCCR	1 cut(s)	579
Eam1104I	CTCTTC	2 cut(s)	212, 261
Eam1105I	GACNNNNNGTC	1 cut(s)	301
EarI	CTCTTC	2 cut(s)	212, 261
Ecl136II	GAGCTC	1 cut(s)	604
Eco130I	CCWWGG	1 cut(s)	411
Eco24I	GRGCYC	2 cut(s)	523, 606
Eco47I	GGWCC	1 cut(s)	442
Eco53kI	GAGCTC	1 cut(s)	604
Eco57I	CTGAAG	3 cut(s)	48, 150, 519
EcoICRI	GAGCTC	1 cut(s)	604
EcoO109I	RGGNCCY	1 cut(s)	442
EcoRII	CCWGG	1 cut(s)	18
EcoT14I	CCWWGG	1 cut(s)	411
EcoT38I	GRGCYC	2 cut(s)	523, 606
ErhI	CCWWGG	1 cut(s)	411
FaiI	YATR	9 cut(s)	370, 388, 390, 495, 512, 578, 618, 657, 708
FauI	CCCGC	1 cut(s)	76
FblI	GTMKAC	2 cut(s)	78, 92
Fnu4HI	GCNGC	4 cut(s)	13, 33, 36, 645
FokI	GGATG	2 cut(s)	68, 340
FriOI	GRGCYC	2 cut(s)	523, 606
Fsp4HI	GCNGC	4 cut(s)	13, 33, 36, 645
FspBI	CTAG	1 cut(s)	506
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	4 cut(s)	13, 33, 36, 645
HaeIII	GGCC	2 cut(s)	542, 581
HapII	CCGG	1 cut(s)	85
HgaI	GACGC	2 cut(s)	103, 305
HhaI	GCGC	1 cut(s)	46
Hin1I	GRCGYC	1 cut(s)	95
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HincII	GTYRAC	2 cut(s)	79, 93
HindII	GTYRAC	2 cut(s)	79, 93
HindIII	AAGCTT	1 cut(s)	452
HinfI	GANTC	2 cut(s)	23, 382
HpaII	CCGG	1 cut(s)	85
HphI	GGTGA	1 cut(s)	102
Hpy166II	GTNNAC	3 cut(s)	59, 79, 93
Hpy188I	TCNGA	2 cut(s)	28, 189
Hpy188III	TCNNGA	4 cut(s)	211, 428, 473, 566
Hpy8I	GTNNAC	3 cut(s)	59, 79, 93
Hpy99I	CGWCG	1 cut(s)	97
HpyAV	CCTTC	2 cut(s)	165, 495
HpyCH4III	ACNGT	2 cut(s)	76, 221
HpyCH4IV	ACGT	1 cut(s)	322
HpyCH4V	TGCA	5 cut(s)	401, 437, 628, 634, 647
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 94, 407
HpyF3I	CTNAG	2 cut(s)	251, 700
HpySE526I	ACGT	1 cut(s)	322
Hsp92I	GRCGYC	1 cut(s)	95
HspAI	GCGC	1 cut(s)	44
Kzo9I	GATC	2 cut(s)	4, 184
LmnI	GCTCC	1 cut(s)	175
Lsp1109I	GCAGC	3 cut(s)	19, 22, 631
MaeI	CTAG	1 cut(s)	506
MaeII	ACGT	1 cut(s)	322
MaeIII	GTNAC	2 cut(s)	195, 337
MalI	GATC	2 cut(s)	6, 186
MboI	GATC	2 cut(s)	4, 184
MboII	GAAGA	5 cut(s)	153, 156, 199, 278, 361
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	2 cut(s)	523, 606
MluCI	AATT	2 cut(s)	288, 328
MluI	ACGCGT	1 cut(s)	297
MlyI	GAGTC	1 cut(s)	376
MnlI	CCTC	8 cut(s)	41, 115, 141, 226, 367, 455, 652, 701
MseI	TTAA	4 cut(s)	309, 315, 327, 555
MslI	CAYNNNNRTG	2 cut(s)	143, 369
MspA1I	CMGCKG	1 cut(s)	12
MspCI	CTTAAG	1 cut(s)	314
MspI	CCGG	1 cut(s)	85
MspR9I	CCNGG	1 cut(s)	20
Mva1269I	GAATGC	1 cut(s)	647
MvaI	CCWGG	1 cut(s)	20
MvnI	CGCG	2 cut(s)	46, 299
MwoI	GCNNNNNNNGC	3 cut(s)	41, 94, 407
NdeII	GATC	2 cut(s)	4, 184
NheI	GCTAGC	1 cut(s)	505
NlaIV	GGNNCC	2 cut(s)	186, 541
NmuCI	GTSAC	1 cut(s)	337
PctI	GAATGC	1 cut(s)	647
PfeI	GAWTC	1 cut(s)	23
PflMI	CCANNNNNTGG	1 cut(s)	549
PkrI	GCNGC	4 cut(s)	14, 34, 37, 646
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
PpuMI	RGGWCCY	1 cut(s)	442
Psp124BI	GAGCTC	1 cut(s)	606
Psp1406I	AACGTT	1 cut(s)	322
Psp5II	RGGWCCY	1 cut(s)	442
Psp6I	CCWGG	1 cut(s)	18
PspGI	CCWGG	1 cut(s)	18
PspN4I	GGNNCC	2 cut(s)	186, 541
PspPI	GGNCC	2 cut(s)	442, 540
PspPPI	RGGWCCY	1 cut(s)	442
PsuI	RGATCY	1 cut(s)	184
RsaI	GTAC	2 cut(s)	60, 218
RsaNI	GTAC	2 cut(s)	59, 217
RseI	CAYNNNNRTG	2 cut(s)	143, 369
SacI	GAGCTC	1 cut(s)	606
SalI	GTCGAC	2 cut(s)	77, 91
SaqAI	TTAA	4 cut(s)	309, 315, 327, 555
SatI	GCNGC	4 cut(s)	13, 33, 36, 645
Sau3AI	GATC	2 cut(s)	4, 184
Sau96I	GGNCC	2 cut(s)	442, 540
SchI	GAGTC	1 cut(s)	376
ScrFI	CCNGG	1 cut(s)	20
SduI	GDGCHC	2 cut(s)	523, 606
SinI	GGWCC	1 cut(s)	442
SmiMI	CAYNNNNRTG	2 cut(s)	143, 369
SmlI	CTYRAG	2 cut(s)	314, 522
SmoI	CTYRAG	2 cut(s)	314, 522
Sse9I	AATT	2 cut(s)	288, 328
SsiI	CCGC	3 cut(s)	12, 69, 293
SspI	AATATT	1 cut(s)	573
SspMI	CTAG	1 cut(s)	506
SstI	GAGCTC	1 cut(s)	606
StyD4I	CCNGG	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	411
TaaI	ACNGT	2 cut(s)	76, 221
TaiI	ACGT	1 cut(s)	325
TaqI	TCGA	3 cut(s)	78, 92, 212
TasI	AATT	2 cut(s)	288, 328
TatI	WGTACW	1 cut(s)	58
TauI	GCSGC	1 cut(s)	15
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	4 cut(s)	309, 315, 327, 555
Tru9I	TTAA	4 cut(s)	309, 315, 327, 555
TscAI	CASTG	2 cut(s)	342, 428
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	3 cut(s)	32, 35, 644
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	2 cut(s)	147, 362
TspRI	CASTG	2 cut(s)	342, 428
Van91I	CCANNNNNTGG	1 cut(s)	549
Vha464I	CTTAAG	1 cut(s)	314
VpaK11BI	GGWCC	1 cut(s)	442
XmiI	GTMKAC	2 cut(s)	78, 92
XspI	CTAG	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.