Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000811

Physical Location & Seq

Genomic Coordinates Forward (+)

42628123 .. 42634127

Gene Structure 6005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG328200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAGTCTACGGATTATATATGGTGGCAGTGTTGGAAAGTCGACGCCATTACTGACTTCACCCCCAAGTGAGGGTTGCTTGACTGACATTTTAGTGAGGAAACCTTCGTCTTCTTCAGCTCCCAGTATTGTGGATCCGAAAGTGTTACTGGAACTCTTCTCGATGTACCTGACAGCAATGAAGACATCCTCGCAACATTTATGTGGAGCTCATGCACTGCAGGTAGAGATTGGGGAACTTAAAGGAAGGTTGACGGAGGTTATTAGCAACTGTGATGCAGTTTGCAAGAGAATATCCGCAGAAGGACCAGAGTCTCTTCGGTCATCTGTCAAGCCATTAGTTATCTGCACCGCACACCAAGAACACCAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

124

Amino Acids

13.22

Weight (kDa)

7.67

Isoelectric Point (pI)

57.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66290 AT5G66290
fragaria_vesca	FvH4_1g12000 FvH4_2g21980
malus_domestica	MD02G1134200.v1.1 MD15G1247200.v1.1
prunus_persica	Prupe.7G166600_v2.0.a1 Prupe.7G166600_v2.0.a1
pyrus_communis	pycom02g10580
rosa_chinensis	RchiOBHm_Chr0c39g0503221 RchiOBHm_Chr1g0353231 RchiOBHm_Chr2g0099641 RchiOBHm_Chr2g0126361 RchiOBHm_Chr5g0080231
rosa_laevigata	RLG00000008117 RLG00000016900 RLG00000021865
rosa_multiflora	Rmu_sc0000394.1_g000010 Rmu_sc0000543.1_g000026 Rmu_sc0005120.1_g000016 Rmu_sc0006325.1_g000056 Rmu_sc0010438.1_g000001 Rmu_sc0035741.1_g000001 Rmu_ssc0000366.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142880 Rroxscaffold_3G00248750 Rroxscaffold_5G00378640 Rroxscaffold_5G00382790 Rroxscaffold_7G00190790
rosa_rugosa	Rorug02G0081700 Rorug02G0258300 Rorug06G0170500
rosa_samantha	Rh1CG034700 Rh1DG035400 Rh2AG131100 Rh2AG189600 Rh2AG189700 Rh2BG134500 Rh2BG230100 Rh2BG328200 Rh2CG135300 Rh2DG135900 Rh2DG196000 Rh2DG196100 Rh2DG196200 Rh3DG312100 Rh4CG305000 Rh4DG111800 Rh5AG369300 Rh5AG496200 Rh5AG496300 Rh5BG555300 Rh5CG578200 Rh5DG254100 Rh5DG254200 Rh6BG167500 Rh6BG167600 Rh6BG241100 Rh7AG282200 Rh7CG301400 Rh7CG301500 Rh7DG435700 Rh7DG435800
rosa_wichuraiana	Rw0G008970 Rw2G010150 Rw3G024850 Rw4G013560 Rw5G022800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	211
AccI	GTMKAC	2 cut(s)	7, 41
AciI	CCGC	2 cut(s)	297, 351
AclWI	GGATC	2 cut(s)	128, 141
AcuI	CTGAAG	1 cut(s)	99
AcyI	GRCGYC	1 cut(s)	44
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	2 cut(s)	70, 71
AluBI	AGCT	2 cut(s)	119, 209
AluI	AGCT	2 cut(s)	119, 209
Alw21I	GWGCWC	1 cut(s)	211
Alw26I	GTCTC	1 cut(s)	318
AlwI	GGATC	2 cut(s)	128, 141
AspS9I	GGNCC	1 cut(s)	305
AsuHPI	GGTGA	1 cut(s)	51
AvaII	GGWCC	1 cut(s)	305
BamHI	GGATCC	1 cut(s)	133
BanII	GRGCYC	1 cut(s)	211
BbsI	GAAGAC	2 cut(s)	102, 188
Bbv12I	GWGCWC	1 cut(s)	211
BcoDI	GTCTC	1 cut(s)	318
BfmI	CTRYAG	1 cut(s)	218
BfuAI	ACCTGC	1 cut(s)	211
Bme18I	GGWCC	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	305
BmiI	GGNNCC	1 cut(s)	135
BmrI	ACTGGG	1 cut(s)	117
BmsI	GCATC	1 cut(s)	265
BmuI	ACTGGG	1 cut(s)	117
BoxI	GACNNNNGTC	1 cut(s)	310
BpiI	GAAGAC	2 cut(s)	102, 188
BsaHI	GRCGYC	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 71
Bse1I	ACTGG	2 cut(s)	123, 153
Bse3DI	GCAATG	1 cut(s)	183
BseGI	GGATG	1 cut(s)	185
BseLI	CCNNNNNNNGG	2 cut(s)	70, 71
BseMI	GCAATG	1 cut(s)	183
BseNI	ACTGG	2 cut(s)	123, 153
BsgI	GTGCAG	1 cut(s)	331
BsiHKAI	GWGCWC	1 cut(s)	211
BslI	CCNNNNNNNGG	2 cut(s)	70, 71
BsmAI	GTCTC	1 cut(s)	318
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp143I	GATC	1 cut(s)	133
BspACI	CCGC	2 cut(s)	297, 351
BspLI	GGNNCC	1 cut(s)	135
BspMAI	CTGCAG	1 cut(s)	222
BspMI	ACCTGC	1 cut(s)	211
BspPI	GGATC	2 cut(s)	128, 141
BsrDI	GCAATG	1 cut(s)	183
BsrI	ACTGG	2 cut(s)	123, 153
BssMI	GATC	1 cut(s)	133
BssNI	GRCGYC	1 cut(s)	44
Bst4CI	ACNGT	1 cut(s)	272
Bst6I	CTCTTC	2 cut(s)	161, 321
BstACI	GRCGYC	1 cut(s)	44
BstF5I	GGATG	1 cut(s)	185
BstKTI	GATC	1 cut(s)	136
BstMAI	GTCTC	1 cut(s)	318
BstMBI	GATC	1 cut(s)	133
BstPAI	GACNNNNGTC	1 cut(s)	310
BstSFI	CTRYAG	1 cut(s)	218
BstV2I	GAAGAC	2 cut(s)	102, 188
BstX2I	RGATCY	1 cut(s)	133
BstXI	CCANNNNNNTGG	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	133
BtsCI	GGATG	1 cut(s)	185
BtsI	GCAGTG	2 cut(s)	34, 215
BtsIMutI	CAGTG	2 cut(s)	34, 215
BveI	ACCTGC	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	305
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	3 cut(s)	119, 209, 334
CviKI_1	RGCY	3 cut(s)	119, 209, 334
CviQI	GTAC	1 cut(s)	166
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
Eam1104I	CTCTTC	2 cut(s)	161, 321
EarI	CTCTTC	2 cut(s)	161, 321
Ecl136II	GAGCTC	1 cut(s)	209
Eco24I	GRGCYC	1 cut(s)	211
Eco47I	GGWCC	1 cut(s)	305
Eco53kI	GAGCTC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	99
EcoICRI	GAGCTC	1 cut(s)	209
EcoT38I	GRGCYC	1 cut(s)	211
FaeI	CATG	1 cut(s)	215
FaiI	YATR	5 cut(s)	17, 19, 21, 202, 213
FatI	CATG	1 cut(s)	211
FblI	GTMKAC	2 cut(s)	7, 41
FokI	GGATG	1 cut(s)	172
FriOI	GRGCYC	1 cut(s)	211
HgaI	GACGC	1 cut(s)	52
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	1 cut(s)	215
HincII	GTYRAC	2 cut(s)	42, 252
HindII	GTYRAC	2 cut(s)	42, 252
HinfI	GANTC	2 cut(s)	4, 311
HphI	GGTGA	1 cut(s)	51
Hpy166II	GTNNAC	3 cut(s)	8, 42, 252
Hpy188I	TCNGA	1 cut(s)	138
Hpy188III	TCNNGA	2 cut(s)	160, 372
Hpy8I	GTNNAC	3 cut(s)	8, 42, 252
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	3 cut(s)	114, 240, 296
HpyCH4III	ACNGT	1 cut(s)	272
HpyCH4V	TGCA	5 cut(s)	215, 220, 278, 285, 348
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	1 cut(s)	215
Kzo9I	GATC	1 cut(s)	133
LmnI	GCTCC	2 cut(s)	124, 206
LpnPI	CCDG	5 cut(s)	134, 136, 182, 206, 321
LweI	GCATC	1 cut(s)	265
MaeIII	GTNAC	1 cut(s)	144
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	5 cut(s)	102, 105, 148, 193, 308
MflI	RGATCY	1 cut(s)	133
MhlI	GDGCHC	1 cut(s)	211
MlyI	GAGTC	2 cut(s)	13, 320
MmeI	TCCRAC	1 cut(s)	13
MnlI	CCTC	4 cut(s)	64, 90, 199, 250
MseI	TTAA	1 cut(s)	240
MslI	CAYNNNNRTG	2 cut(s)	92, 201
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	1 cut(s)	215
NlaIV	GGNNCC	1 cut(s)	135
PleI	GAGTC	2 cut(s)	12, 319
PpsI	GAGTC	2 cut(s)	12, 319
PshAI	GACNNNNGTC	1 cut(s)	310
Psp124BI	GAGCTC	1 cut(s)	211
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	1 cut(s)	305
PstI	CTGCAG	1 cut(s)	222
PsuI	RGATCY	1 cut(s)	133
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
RseI	CAYNNNNRTG	2 cut(s)	92, 201
SacI	GAGCTC	1 cut(s)	211
SalI	GTCGAC	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	240
Sau3AI	GATC	1 cut(s)	133
Sau96I	GGNCC	1 cut(s)	305
SchI	GAGTC	2 cut(s)	13, 320
SduI	GDGCHC	1 cut(s)	211
SetI	ASST	7 cut(s)	106, 121, 171, 211, 225, 251, 261
SfaNI	GCATC	1 cut(s)	265
SfcI	CTRYAG	1 cut(s)	218
SinI	GGWCC	1 cut(s)	305
SmiMI	CAYNNNNRTG	2 cut(s)	92, 201
SsiI	CCGC	2 cut(s)	297, 351
SstI	GAGCTC	1 cut(s)	211
TaaI	ACNGT	1 cut(s)	272
TaqI	TCGA	2 cut(s)	41, 161
TaqII	GACCGA	1 cut(s)	309
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	2 cut(s)	34, 222
TspDTI	ATGAA	1 cut(s)	194
TspGWI	ACGGA	2 cut(s)	25, 269
TspRI	CASTG	2 cut(s)	34, 222
VpaK11BI	GGWCC	1 cut(s)	305
XmiI	GTMKAC	2 cut(s)	7, 41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.