Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000811

Physical Location & Seq

Genomic Coordinates Forward (+)

31317435 .. 31318320

Gene Structure 886 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG301500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGAGAATGGCTATAGTTCTTTTCAATGTTATTTTTCAAGGTTCTCTGTTTACGAACTTTGTGGGAATACTTAGCCAAGGACTAAGAATAGCTCCTCCTAAAGCTCCGGCTACTGGTTATATGTTTGGCAAGGGGATTTACTTTGCTGACCTTGTCAGTAAGAGTGCTCAATATTGCTATACAGATAAGAAAAATCCTGTGGGCCTCATGCTTTTAAGTGAAGTTGCCCTGGGAGAGATCCATGAGCTCAAGAAGGCCACATATATGGATAAACCTCCTAAGGGAAAGCACTATACGAAGGGACTTGGCAAGAAAAAACCTAAGTCGGACTATGTTAAATGGAGAGATGATGTCACTGTGCCCTGGGCAAACCAGTGGATTCACATGTCCGAGTCTCTGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0003950 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006464 GO:0006471 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016070 GO:0016740 GO:0016757 GO:0016763 GO:0016874 GO:0016886 GO:0019538 GO:0022616 GO:0033554 GO:0033993 GO:0034641 GO:0034645 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0071704 GO:0090304 GO:0097305 GO:0140097 GO:1901360 GO:1901564 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 map03410 map04210 map04212 map04214 map04217

Pfam Domains

Protein Families

BRCT PADR1 PARP PARP_reg WGR zf-PARP

Protein Analysis

134

Amino Acids

15.08

Weight (kDa)

9.66

Isoelectric Point (pI)

25.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PARP	PF00644	10 - 125	1.2e-45	Poly(ADP-ribose) polymerase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66290 AT5G66290
fragaria_vesca	FvH4_1g12000 FvH4_2g21980
malus_domestica	MD02G1134200.v1.1 MD15G1247200.v1.1
prunus_persica	Prupe.7G166600_v2.0.a1 Prupe.7G166600_v2.0.a1
pyrus_communis	pycom02g10580
rosa_chinensis	RchiOBHm_Chr0c39g0503221 RchiOBHm_Chr1g0353231 RchiOBHm_Chr2g0099641 RchiOBHm_Chr2g0126361 RchiOBHm_Chr5g0080231
rosa_laevigata	RLG00000008117 RLG00000016900 RLG00000021865
rosa_multiflora	Rmu_sc0000394.1_g000010 Rmu_sc0000543.1_g000026 Rmu_sc0005120.1_g000016 Rmu_sc0006325.1_g000056 Rmu_sc0010438.1_g000001 Rmu_sc0035741.1_g000001 Rmu_ssc0000366.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142880 Rroxscaffold_3G00248750 Rroxscaffold_5G00378640 Rroxscaffold_5G00382790 Rroxscaffold_7G00190790
rosa_rugosa	Rorug02G0081700 Rorug02G0258300 Rorug06G0170500
rosa_samantha	Rh1CG034700 Rh1DG035400 Rh2AG131100 Rh2AG189600 Rh2AG189700 Rh2BG134500 Rh2BG230100 Rh2BG328200 Rh2CG135300 Rh2DG135900 Rh2DG196000 Rh2DG196100 Rh2DG196200 Rh3DG312100 Rh4CG305000 Rh4DG111800 Rh5AG369300 Rh5AG496200 Rh5AG496300 Rh5BG555300 Rh5CG578200 Rh5DG254100 Rh5DG254200 Rh6BG167500 Rh6BG167600 Rh6BG241100 Rh7AG282200 Rh7CG301400 Rh7CG301500 Rh7DG435700 Rh7DG435800
rosa_wichuraiana	Rw0G008970 Rw2G010150 Rw3G024850 Rw4G013560 Rw5G022800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	232
AfiI	CCNNNNNNNGG	2 cut(s)	113, 281
AflIII	ACRYGT	1 cut(s)	384
AgsI	TTSAA	2 cut(s)	25, 38
AjnI	CCWGG	2 cut(s)	228, 362
AluBI	AGCT	4 cut(s)	92, 104, 247, 402
AluI	AGCT	4 cut(s)	92, 104, 247, 402
Alw21I	GWGCWC	2 cut(s)	169, 249
Alw26I	GTCTC	1 cut(s)	399
AlwI	GGATC	1 cut(s)	232
AoxI	GGCC	2 cut(s)	202, 255
AspS9I	GGNCC	1 cut(s)	202
AxyI	CCTNAGG	1 cut(s)	279
BaeGI	GKGCMC	1 cut(s)	363
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	2 cut(s)	169, 249
BciT130I	CCWGG	2 cut(s)	230, 364
BcoDI	GTCTC	1 cut(s)	399
BfmI	CTRYAG	1 cut(s)	12
Bme1390I	CCNGG	2 cut(s)	230, 364
BmgT120I	GGNCC	1 cut(s)	202
BmrFI	CCNGG	2 cut(s)	230, 364
BpuEI	CTTGAG	1 cut(s)	233
BsaJI	CCNNGG	5 cut(s)	76, 228, 229, 362, 363
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 281
Bse1I	ACTGG	2 cut(s)	118, 373
Bse21I	CCTNAGG	1 cut(s)	279
BseBI	CCWGG	2 cut(s)	230, 364
BseDI	CCNNGG	5 cut(s)	76, 228, 229, 362, 363
BseLI	CCNNNNNNNGG	2 cut(s)	113, 281
BseMII	CTCAG	1 cut(s)	389
BseNI	ACTGG	2 cut(s)	118, 373
BseRI	GAGGAG	1 cut(s)	84
BseSI	GKGCMC	1 cut(s)	363
BshFI	GGCC	2 cut(s)	204, 257
BsiHKAI	GWGCWC	2 cut(s)	169, 249
BsiSI	CCGG	1 cut(s)	107
BslFI	GGGAC	1 cut(s)	315
BslI	CCNNNNNNNGG	2 cut(s)	113, 281
BsmAI	GTCTC	1 cut(s)	399
BsmFI	GGGAC	1 cut(s)	315
BsnI	GGCC	2 cut(s)	204, 257
Bsp1286I	GDGCHC	3 cut(s)	169, 249, 363
Bsp143I	GATC	1 cut(s)	237
BspANI	GGCC	2 cut(s)	204, 257
BspCNI	CTCAG	1 cut(s)	390
BspPI	GGATC	1 cut(s)	232
BsrI	ACTGG	2 cut(s)	118, 373
BssECI	CCNNGG	5 cut(s)	76, 228, 229, 362, 363
BssMI	GATC	1 cut(s)	237
BssT1I	CCWWGG	1 cut(s)	76
Bst2UI	CCWGG	2 cut(s)	230, 364
Bst4CI	ACNGT	1 cut(s)	358
BstDEI	CTNAG	5 cut(s)	71, 83, 279, 321, 398
BstKTI	GATC	1 cut(s)	240
BstMAI	GTCTC	1 cut(s)	399
BstMBI	GATC	1 cut(s)	237
BstNI	CCWGG	2 cut(s)	230, 364
BstNSI	RCATGY	1 cut(s)	388
BstSCI	CCNGG	2 cut(s)	228, 362
BstSFI	CTRYAG	1 cut(s)	12
BstSLI	GKGCMC	1 cut(s)	363
BstX2I	RGATCY	1 cut(s)	237
BstXI	CCANNNNNNTGG	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	237
Bsu36I	CCTNAGG	1 cut(s)	279
BsuRI	GGCC	2 cut(s)	204, 257
BtsIMutI	CAGTG	2 cut(s)	354, 380
Cfr13I	GGNCC	1 cut(s)	202
CviAII	CATG	3 cut(s)	208, 242, 385
CviJI	RGCY	9 cut(s)	11, 75, 92, 104, 110, 204, 247, 257, 402
CviKI_1	RGCY	9 cut(s)	11, 75, 92, 104, 110, 204, 247, 257, 402
DdeI	CTNAG	5 cut(s)	71, 83, 279, 321, 398
DpnI	GATC	1 cut(s)	239
DpnII	GATC	1 cut(s)	237
Ecl136II	GAGCTC	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	76
Eco24I	GRGCYC	1 cut(s)	249
Eco53kI	GAGCTC	1 cut(s)	247
Eco81I	CCTNAGG	1 cut(s)	279
EcoICRI	GAGCTC	1 cut(s)	247
EcoRII	CCWGG	2 cut(s)	228, 362
EcoT14I	CCWWGG	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	76
FaeI	CATG	3 cut(s)	211, 245, 388
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	3 cut(s)	207, 241, 384
FriOI	GRGCYC	1 cut(s)	249
HaeIII	GGCC	2 cut(s)	204, 257
HapII	CCGG	1 cut(s)	107
Hin1II	CATG	3 cut(s)	211, 245, 388
HinfI	GANTC	2 cut(s)	379, 392
HpaII	CCGG	1 cut(s)	107
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	3 cut(s)	328, 391, 399
Hpy188III	TCNNGA	1 cut(s)	250
Hpy8I	GTNNAC	1 cut(s)	51
HpyAV	CCTTC	2 cut(s)	247, 292
HpyCH4III	ACNGT	1 cut(s)	358
HpyF3I	CTNAG	5 cut(s)	71, 83, 279, 321, 398
Hsp92II	CATG	3 cut(s)	211, 245, 388
Kzo9I	GATC	1 cut(s)	237
LmnI	GCTCC	2 cut(s)	97, 109
LpnPI	CCDG	8 cut(s)	99, 120, 210, 215, 242, 349, 376, 386
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	1 cut(s)	239
MboI	GATC	1 cut(s)	237
MflI	RGATCY	1 cut(s)	237
MhlI	GDGCHC	3 cut(s)	169, 249, 363
MlyI	GAGTC	1 cut(s)	401
MmeI	TCCRAC	1 cut(s)	306
MnlI	CCTC	3 cut(s)	105, 215, 285
MseI	TTAA	2 cut(s)	215, 336
MslI	CAYNNNNRTG	1 cut(s)	263
MspI	CCGG	1 cut(s)	107
MspR9I	CCNGG	2 cut(s)	230, 364
MvaI	CCWGG	2 cut(s)	230, 364
NdeII	GATC	1 cut(s)	237
NlaIII	CATG	3 cut(s)	211, 245, 388
NmuCI	GTSAC	1 cut(s)	352
NspI	RCATGY	1 cut(s)	388
PasI	CCCWGGG	2 cut(s)	229, 363
PciI	ACATGT	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	379
PflFI	GACNNNGTC	1 cut(s)	152
PleI	GAGTC	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	400
PscI	ACATGT	1 cut(s)	384
Psp124BI	GAGCTC	1 cut(s)	249
Psp6I	CCWGG	2 cut(s)	228, 362
PspGI	CCWGG	2 cut(s)	228, 362
PspPI	GGNCC	1 cut(s)	202
PsuI	RGATCY	1 cut(s)	237
PsyI	GACNNNGTC	1 cut(s)	152
RseI	CAYNNNNRTG	1 cut(s)	263
SacI	GAGCTC	1 cut(s)	249
SaqAI	TTAA	2 cut(s)	215, 336
Sau3AI	GATC	1 cut(s)	237
Sau96I	GGNCC	1 cut(s)	202
SchI	GAGTC	1 cut(s)	401
ScrFI	CCNGG	2 cut(s)	230, 364
SduI	GDGCHC	3 cut(s)	169, 249, 363
SetI	ASST	8 cut(s)	43, 94, 106, 153, 249, 277, 322, 404
SfcI	CTRYAG	1 cut(s)	12
SmiMI	CAYNNNNRTG	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
SspI	AATATT	1 cut(s)	173
SstI	GAGCTC	1 cut(s)	249
StyD4I	CCNGG	2 cut(s)	228, 362
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	1 cut(s)	358
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	2 cut(s)	215, 336
Tru9I	TTAA	2 cut(s)	215, 336
TscAI	CASTG	2 cut(s)	361, 380
TseFI	GTSAC	1 cut(s)	352
Tsp45I	GTSAC	1 cut(s)	352
TspRI	CASTG	2 cut(s)	361, 380
Tth111I	GACNNNGTC	1 cut(s)	152
XceI	RCATGY	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.