Rh6BG167500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000811
Physical Location & Seq
Reverse (-)
27471221 .. 27472666
1446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG167500.1

Sequence Viewer

Length: 330 bp
ATGTACCGTGAGTGGCAGGAGGAGAATGTCAAAAAGCTGAGCCAAAAACAGGAAGAGATAGAGAACAAGATAGAAATTGCGGACGCGATGTCTGATAAACTTAAGCAACGTTTTAATTATTCAGTGACAGCAATGAAGACATCCTCGCAACATTTATGTGGAGTTCATGCACTACAGGTAGAGATCGGGGAACTTAAAGGAAGGTTGACGGAGGTTATTAGCAACTGTCATGCAGTGTGCAAGAGAATATCCGCAGAAGGACCAGAGTATCTTCGGTCATCTGTCAAGCCATTAGTTATCTGCACCGCACACCAAGAACACCAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.47

Weight (kDa)

6.96

Isoelectric Point (pI)

65.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 86
AciI CCGC 3 cut(s) 80, 252, 306
AclI AACGTT 1 cut(s) 109
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 49
AflII CTTAAG 1 cut(s) 101
AhdI GACNNNNNGTC 1 cut(s) 88
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 260
AvaII GGWCC 1 cut(s) 260
BaeI ACNNNNGTAYC 2 cut(s) 251, 284
BbsI GAAGAC 1 cut(s) 143
BfmI CTRYAG 1 cut(s) 173
BfrI CTTAAG 1 cut(s) 101
BlpI GCTNAGC 1 cut(s) 38
Bme18I GGWCC 1 cut(s) 260
BmeRI GACNNNNNGTC 1 cut(s) 88
BmgT120I GGNCC 1 cut(s) 260
BpiI GAAGAC 1 cut(s) 143
Bpu1102I GCTNAGC 1 cut(s) 38
Bsc4I CCNNNNNNNGG 1 cut(s) 49
Bse3DI GCAATG 1 cut(s) 138
BseGI GGATG 1 cut(s) 140
BseLI CCNNNNNNNGG 1 cut(s) 49
BseMI GCAATG 1 cut(s) 138
BseMII CTCAG 1 cut(s) 29
BseRI GAGGAG 1 cut(s) 35
BsgI GTGCAG 1 cut(s) 286
Bsh1236I CGCG 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 49
Bsp143I GATC 1 cut(s) 183
Bsp1720I GCTNAGC 1 cut(s) 38
BspACI CCGC 3 cut(s) 80, 252, 306
BspCNI CTCAG 1 cut(s) 30
BspFNI CGCG 1 cut(s) 86
BspTI CTTAAG 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 138
BssMI GATC 1 cut(s) 183
Bst4CI ACNGT 2 cut(s) 8, 227
Bst6I CTCTTC 1 cut(s) 48
BstAFI CTTAAG 1 cut(s) 101
BstDEI CTNAG 1 cut(s) 38
BstF5I GGATG 1 cut(s) 140
BstFNI CGCG 1 cut(s) 86
BstKTI GATC 1 cut(s) 186
BstMBI GATC 1 cut(s) 183
BstSFI CTRYAG 1 cut(s) 173
BstUI CGCG 1 cut(s) 86
BstV2I GAAGAC 1 cut(s) 143
BtgZI GCGATG 1 cut(s) 101
BtsCI GGATG 1 cut(s) 140
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 2 cut(s) 129, 240
Cfr13I GGNCC 1 cut(s) 260
CseI GACGC 1 cut(s) 92
Csp6I GTAC 1 cut(s) 4
CviAII CATG 2 cut(s) 167, 230
CviJI RGCY 3 cut(s) 37, 42, 289
CviKI_1 RGCY 3 cut(s) 37, 42, 289
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 1 cut(s) 38
DpnI GATC 1 cut(s) 185
DpnII GATC 1 cut(s) 183
DriI GACNNNNNGTC 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 48
Eam1105I GACNNNNNGTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 260
FaeI CATG 2 cut(s) 170, 233
FaiI YATR 3 cut(s) 157, 168, 231
FatI CATG 2 cut(s) 166, 229
FokI GGATG 1 cut(s) 127
HgaI GACGC 1 cut(s) 92
Hin1II CATG 2 cut(s) 170, 233
HincII GTYRAC 1 cut(s) 207
HindII GTYRAC 1 cut(s) 207
Hpy166II GTNNAC 1 cut(s) 207
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 1 cut(s) 327
Hpy8I GTNNAC 1 cut(s) 207
HpyAV CCTTC 2 cut(s) 195, 251
HpyCH4III ACNGT 2 cut(s) 8, 227
HpyCH4IV ACGT 1 cut(s) 109
HpyCH4V TGCA 4 cut(s) 170, 233, 240, 303
HpyF3I CTNAG 1 cut(s) 38
HpySE526I ACGT 1 cut(s) 109
Hsp92II CATG 2 cut(s) 170, 233
Kzo9I GATC 1 cut(s) 183
LpnPI CCDG 4 cut(s) 2, 35, 161, 276
MaeII ACGT 1 cut(s) 109
MaeIII GTNAC 1 cut(s) 124
MalI GATC 1 cut(s) 185
MboI GATC 1 cut(s) 183
MboII GAAGA 3 cut(s) 65, 148, 263
MluCI AATT 2 cut(s) 75, 115
MnlI CCTC 3 cut(s) 13, 154, 205
MseI TTAA 3 cut(s) 102, 114, 195
MslI CAYNNNNRTG 1 cut(s) 156
MspCI CTTAAG 1 cut(s) 101
MvnI CGCG 1 cut(s) 86
NdeII GATC 1 cut(s) 183
NlaIII CATG 2 cut(s) 170, 233
NmuCI GTSAC 1 cut(s) 124
Psp1406I AACGTT 1 cut(s) 109
PspPI GGNCC 1 cut(s) 260
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 156
SaqAI TTAA 3 cut(s) 102, 114, 195
Sau3AI GATC 1 cut(s) 183
Sau96I GGNCC 1 cut(s) 260
SetI ASST 5 cut(s) 39, 112, 180, 206, 216
SfcI CTRYAG 1 cut(s) 173
SinI GGWCC 1 cut(s) 260
SmiMI CAYNNNNRTG 1 cut(s) 156
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 2 cut(s) 75, 115
SsiI CCGC 3 cut(s) 80, 252, 306
TaaI ACNGT 2 cut(s) 8, 227
TaiI ACGT 1 cut(s) 112
TaqII GACCGA 1 cut(s) 264
TasI AATT 2 cut(s) 75, 115
Tru1I TTAA 3 cut(s) 102, 114, 195
Tru9I TTAA 3 cut(s) 102, 114, 195
TscAI CASTG 2 cut(s) 129, 240
TseFI GTSAC 1 cut(s) 124
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 2 cut(s) 149, 155
TspGWI ACGGA 1 cut(s) 224
TspRI CASTG 2 cut(s) 129, 240
Vha464I CTTAAG 1 cut(s) 101
VpaK11BI GGWCC 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.