Rw3G024850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000811
Physical Location & Seq
Reverse (-)
32421162 .. 32424889
3728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G024850.1

Sequence Viewer

Length: 510 bp
ATGGGTGGAACAGAGGAATGGGTTCCTGAACCTCTCATTCCTCCTATCACAGAAGATATGCAGTATGAACCCCCATCGACGCCATTACTGACTTCACCCCCAAGTAAGGGTAGCTTGACTGACATTTTAGTGAGGAAACCTTCATCTTCTTCAGCTCCCATGTTACTGGAACTCTTCTCGATGTACCGTGAGTGGCAGGAGGAGAATGTCAAAAAGCTGAGCCAAAAACAGGAAGAGATAGAGAACAAGATAGAAATTGCGGACGCGTTGTCTGTTAAACTTAAGCAACGTTTTAATTATTCAATGACAGCAATGAAGACATCCTCGCAACATTTATGTGGAGTTCATGCACTGCAGGTAGAGATTGGGGAACTTAAAGGAAGGTTGACGGAGGTTATTAGCAACTGTGTTGCAGTGTGCAAGAGAATATCCGCAGAAGGACCAGAGTCTCTTCGGTCATCTGTCAAGCCGTTAGTTATCTGCACTGCACACCAAGAACACCAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

18.83

Weight (kDa)

5.63

Isoelectric Point (pI)

63.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 346
AccII CGCG 1 cut(s) 266
AciI CCGC 2 cut(s) 260, 432
AclI AACGTT 1 cut(s) 289
AcuI CTGAAG 1 cut(s) 135
AcyI GRCGYC 1 cut(s) 80
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 3 cut(s) 106, 107, 229
AflII CTTAAG 1 cut(s) 281
AflIII ACRYGT 1 cut(s) 264
AgsI TTSAA 1 cut(s) 303
AhdI GACNNNNNGTC 1 cut(s) 268
AluBI AGCT 3 cut(s) 114, 155, 217
AluI AGCT 3 cut(s) 114, 155, 217
Alw26I GTCTC 1 cut(s) 453
Asp700I GAANNNNTTC 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 440
AsuHPI GGTGA 1 cut(s) 87
AvaII GGWCC 1 cut(s) 440
BbsI GAAGAC 1 cut(s) 323
BccI CCATC 1 cut(s) 82
BceAI ACGGC 1 cut(s) 454
BcoDI GTCTC 1 cut(s) 453
BfmI CTRYAG 1 cut(s) 353
BfrI CTTAAG 1 cut(s) 281
BfuAI ACCTGC 1 cut(s) 346
BlpI GCTNAGC 1 cut(s) 218
Bme18I GGWCC 1 cut(s) 440
BmeRI GACNNNNNGTC 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 440
BmiI GGNNCC 1 cut(s) 24
BoxI GACNNNNGTC 1 cut(s) 445
BpiI GAAGAC 1 cut(s) 323
Bpu1102I GCTNAGC 1 cut(s) 218
BsaHI GRCGYC 1 cut(s) 80
Bsc4I CCNNNNNNNGG 3 cut(s) 106, 107, 229
Bse1I ACTGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 318
BseGI GGATG 1 cut(s) 320
BseLI CCNNNNNNNGG 3 cut(s) 106, 107, 229
BseMI GCAATG 1 cut(s) 318
BseMII CTCAG 1 cut(s) 209
BseNI ACTGG 1 cut(s) 171
BseRI GAGGAG 1 cut(s) 215
BsgI GTGCAG 2 cut(s) 466, 471
Bsh1236I CGCG 1 cut(s) 266
BslI CCNNNNNNNGG 3 cut(s) 106, 107, 229
BsmAI GTCTC 1 cut(s) 453
Bsp1720I GCTNAGC 1 cut(s) 218
BspACI CCGC 2 cut(s) 260, 432
BspCNI CTCAG 1 cut(s) 210
BspFNI CGCG 1 cut(s) 266
BspLI GGNNCC 1 cut(s) 24
BspMAI CTGCAG 1 cut(s) 357
BspMI ACCTGC 1 cut(s) 346
BspTI CTTAAG 1 cut(s) 281
BsrDI GCAATG 1 cut(s) 318
BsrI ACTGG 1 cut(s) 171
BssNI GRCGYC 1 cut(s) 80
Bst4CI ACNGT 2 cut(s) 188, 407
Bst6I CTCTTC 3 cut(s) 179, 228, 456
BstACI GRCGYC 1 cut(s) 80
BstAFI CTTAAG 1 cut(s) 281
BstDEI CTNAG 1 cut(s) 218
BstF5I GGATG 1 cut(s) 320
BstFNI CGCG 1 cut(s) 266
BstMAI GTCTC 1 cut(s) 453
BstPAI GACNNNNGTC 1 cut(s) 445
BstSFI CTRYAG 1 cut(s) 353
BstUI CGCG 1 cut(s) 266
BstV2I GAAGAC 1 cut(s) 323
BstXI CCANNNNNNTGG 1 cut(s) 166
BtsCI GGATG 1 cut(s) 320
BtsI GCAGTG 3 cut(s) 350, 420, 483
BtsIMutI CAGTG 3 cut(s) 350, 420, 483
BveI ACCTGC 1 cut(s) 346
Cfr13I GGNCC 1 cut(s) 440
CseI GACGC 2 cut(s) 88, 272
Csp6I GTAC 1 cut(s) 184
CviAII CATG 2 cut(s) 160, 347
CviJI RGCY 5 cut(s) 114, 155, 217, 222, 469
CviKI_1 RGCY 5 cut(s) 114, 155, 217, 222, 469
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 1 cut(s) 218
DriI GACNNNNNGTC 1 cut(s) 268
Eam1104I CTCTTC 3 cut(s) 179, 228, 456
Eam1105I GACNNNNNGTC 1 cut(s) 268
EarI CTCTTC 3 cut(s) 179, 228, 456
Eco47I GGWCC 1 cut(s) 440
Eco57I CTGAAG 1 cut(s) 135
FaeI CATG 2 cut(s) 163, 350
FaiI YATR 5 cut(s) 59, 66, 161, 337, 348
FalI AAGNNNNNCTT 2 cut(s) 98, 130
FatI CATG 2 cut(s) 159, 346
FokI GGATG 1 cut(s) 307
HgaI GACGC 2 cut(s) 88, 272
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 2 cut(s) 163, 350
HincII GTYRAC 1 cut(s) 387
HindII GTYRAC 1 cut(s) 387
HinfI GANTC 1 cut(s) 446
HphI GGTGA 1 cut(s) 87
Hpy166II GTNNAC 1 cut(s) 387
Hpy188III TCNNGA 3 cut(s) 26, 178, 507
Hpy8I GTNNAC 1 cut(s) 387
Hpy99I CGWCG 1 cut(s) 82
HpyAV CCTTC 3 cut(s) 150, 375, 431
HpyCH4III ACNGT 2 cut(s) 188, 407
HpyCH4IV ACGT 1 cut(s) 289
HpyCH4V TGCA 7 cut(s) 61, 350, 355, 413, 420, 483, 488
HpyF3I CTNAG 1 cut(s) 218
HpySE526I ACGT 1 cut(s) 289
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 2 cut(s) 163, 350
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 6 cut(s) 39, 152, 182, 215, 341, 456
MaeII ACGT 1 cut(s) 289
MaeIII GTNAC 1 cut(s) 162
MboII GAAGA 7 cut(s) 65, 138, 141, 166, 245, 328, 443
MluCI AATT 2 cut(s) 255, 295
MluI ACGCGT 1 cut(s) 264
MlyI GAGTC 1 cut(s) 455
MnlI CCTC 7 cut(s) 7, 42, 51, 126, 193, 334, 385
MroXI GAANNNNTTC 1 cut(s) 21
MseI TTAA 4 cut(s) 276, 282, 294, 375
MslI CAYNNNNRTG 2 cut(s) 128, 336
MspCI CTTAAG 1 cut(s) 281
MvnI CGCG 1 cut(s) 266
NlaIII CATG 2 cut(s) 163, 350
NlaIV GGNNCC 1 cut(s) 24
PdmI GAANNNNTTC 1 cut(s) 21
PleI GAGTC 1 cut(s) 454
PpsI GAGTC 1 cut(s) 454
PshAI GACNNNNGTC 1 cut(s) 445
Psp1406I AACGTT 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 24
PspPI GGNCC 1 cut(s) 440
PstI CTGCAG 1 cut(s) 357
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
RseI CAYNNNNRTG 2 cut(s) 128, 336
SaqAI TTAA 4 cut(s) 276, 282, 294, 375
Sau96I GGNCC 1 cut(s) 440
SchI GAGTC 1 cut(s) 455
SetI ASST 9 cut(s) 34, 116, 142, 157, 219, 292, 360, 386, 396
SfcI CTRYAG 1 cut(s) 353
SinI GGWCC 1 cut(s) 440
SmiMI CAYNNNNRTG 2 cut(s) 128, 336
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 2 cut(s) 255, 295
SsiI CCGC 2 cut(s) 260, 432
TaaI ACNGT 2 cut(s) 188, 407
TaiI ACGT 1 cut(s) 292
TaqI TCGA 2 cut(s) 77, 179
TaqII GACCGA 1 cut(s) 444
TasI AATT 2 cut(s) 255, 295
Tru1I TTAA 4 cut(s) 276, 282, 294, 375
Tru9I TTAA 4 cut(s) 276, 282, 294, 375
TscAI CASTG 3 cut(s) 357, 420, 490
TspDTI ATGAA 4 cut(s) 81, 132, 329, 335
TspGWI ACGGA 1 cut(s) 404
TspRI CASTG 3 cut(s) 357, 420, 490
Vha464I CTTAAG 1 cut(s) 281
VpaK11BI GGWCC 1 cut(s) 440
XmnI GAANNNNTTC 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.