Rh2AG189700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000811
Physical Location & Seq
Forward (+)
18684304 .. 18688506
4203 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG189700.1

Sequence Viewer

Length: 255 bp
ATGAGTCTGCTCTCAATTGTCTATATAGGTATTGTGGATCCGAAAGTGTTACTGGAACTCTTCTCGATGTACCGTGAGTGGCAGGAGGAGAATGTCAAAAAGCTGAGCCAAAAACAGGAAGAGATAGAGAACAAGATAGAAATTGCGGACGCGTTGTCTGTTAAACTTAGGCAACGTTTTAATTATTCAGTGACAGCAATGAAGACATCCTCGCAACATTTATGTGGAGGACAAACTAAGGCAAAAATTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.68

Weight (kDa)

8.76

Isoelectric Point (pI)

45.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 152
AciI CCGC 1 cut(s) 146
AclI AACGTT 1 cut(s) 175
AclWI GGATC 2 cut(s) 32, 45
AfaI GTAC 1 cut(s) 71
AfiI CCNNNNNNNGG 1 cut(s) 115
AflIII ACRYGT 1 cut(s) 150
AhdI GACNNNNNGTC 1 cut(s) 154
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
AlwI GGATC 2 cut(s) 32, 45
BamHI GGATCC 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 209
BlpI GCTNAGC 1 cut(s) 104
BmeRI GACNNNNNGTC 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 39
BpiI GAAGAC 1 cut(s) 209
Bpu1102I GCTNAGC 1 cut(s) 104
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse1I ACTGG 1 cut(s) 57
Bse3DI GCAATG 1 cut(s) 204
BseGI GGATG 1 cut(s) 206
BseLI CCNNNNNNNGG 1 cut(s) 115
BseMI GCAATG 1 cut(s) 204
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 57
BseRI GAGGAG 1 cut(s) 101
Bsh1236I CGCG 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 115
Bsp143I GATC 1 cut(s) 37
Bsp1720I GCTNAGC 1 cut(s) 104
BspACI CCGC 1 cut(s) 146
BspCNI CTCAG 1 cut(s) 96
BspFNI CGCG 1 cut(s) 152
BspLI GGNNCC 1 cut(s) 39
BspPI GGATC 2 cut(s) 32, 45
BsrDI GCAATG 1 cut(s) 204
BsrI ACTGG 1 cut(s) 57
BssMI GATC 1 cut(s) 37
Bst4CI ACNGT 1 cut(s) 74
Bst6I CTCTTC 2 cut(s) 65, 114
BstDEI CTNAG 3 cut(s) 104, 167, 237
BstF5I GGATG 1 cut(s) 206
BstFNI CGCG 1 cut(s) 152
BstKTI GATC 1 cut(s) 40
BstMBI GATC 1 cut(s) 37
BstUI CGCG 1 cut(s) 152
BstV2I GAAGAC 1 cut(s) 209
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BtsCI GGATG 1 cut(s) 206
BtsIMutI CAGTG 1 cut(s) 195
CseI GACGC 1 cut(s) 158
Csp6I GTAC 1 cut(s) 70
CviJI RGCY 2 cut(s) 103, 108
CviKI_1 RGCY 2 cut(s) 103, 108
CviQI GTAC 1 cut(s) 70
DdeI CTNAG 3 cut(s) 104, 167, 237
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
DriI GACNNNNNGTC 1 cut(s) 154
Eam1104I CTCTTC 2 cut(s) 65, 114
Eam1105I GACNNNNNGTC 1 cut(s) 154
EarI CTCTTC 2 cut(s) 65, 114
FaiI YATR 3 cut(s) 24, 26, 223
FokI GGATG 1 cut(s) 193
HgaI GACGC 1 cut(s) 158
HinfI GANTC 1 cut(s) 4
Hpy188I TCNGA 1 cut(s) 42
Hpy188III TCNNGA 1 cut(s) 64
HpyCH4III ACNGT 1 cut(s) 74
HpyCH4IV ACGT 1 cut(s) 175
HpyF3I CTNAG 3 cut(s) 104, 167, 237
HpySE526I ACGT 1 cut(s) 175
Kzo9I GATC 1 cut(s) 37
LpnPI CCDG 3 cut(s) 38, 68, 101
MaeII ACGT 1 cut(s) 175
MaeIII GTNAC 2 cut(s) 48, 190
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MboII GAAGA 3 cut(s) 52, 131, 214
MfeI CAATTG 1 cut(s) 15
MflI RGATCY 1 cut(s) 37
MluCI AATT 4 cut(s) 15, 141, 181, 246
MluI ACGCGT 1 cut(s) 150
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 3 cut(s) 79, 220, 221
MseI TTAA 2 cut(s) 162, 180
MslI CAYNNNNRTG 1 cut(s) 222
MunI CAATTG 1 cut(s) 15
MvnI CGCG 1 cut(s) 152
NdeII GATC 1 cut(s) 37
NlaIV GGNNCC 1 cut(s) 39
NmuCI GTSAC 1 cut(s) 190
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Psp1406I AACGTT 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 39
PsuI RGATCY 1 cut(s) 37
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
RseI CAYNNNNRTG 1 cut(s) 222
SaqAI TTAA 2 cut(s) 162, 180
Sau3AI GATC 1 cut(s) 37
SchI GAGTC 1 cut(s) 13
SetI ASST 3 cut(s) 31, 105, 178
SgeI CNNG 8 cut(s) 65, 76, 86, 95, 128, 145, 163, 223
SmiMI CAYNNNNRTG 1 cut(s) 222
Sse9I AATT 4 cut(s) 15, 141, 181, 246
SsiI CCGC 1 cut(s) 146
TaaI ACNGT 1 cut(s) 74
TaiI ACGT 1 cut(s) 178
TaqI TCGA 1 cut(s) 65
TasI AATT 4 cut(s) 15, 141, 181, 246
Tru1I TTAA 2 cut(s) 162, 180
Tru9I TTAA 2 cut(s) 162, 180
TscAI CASTG 1 cut(s) 195
TseFI GTSAC 1 cut(s) 190
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 1 cut(s) 215
TspRI CASTG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.