Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000811

Physical Location & Seq

Genomic Coordinates Forward (+)

42069816 .. 42077361

Gene Structure 7546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00248750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGATGATGACTCCTCCGCTCGTCTGCTTTGCTATGCTTACAGCCTCAGAGACTTGGATATCACAGATATGGCATGGAGGCCATCTACTTTGATGAAGGTCTCCGCCACTTGGATTTGGGTGCTGATTTTGGAAGAAGGACCGAAGCAACTAGATCTTGCGTTCTTGGAATCAAAAGAGGAGGAGAGAAGACTTTTGATTGAAGAAAGATCAAAGTCGATCAATCTTGCGTTCTTGTTGAAAATGCTAGAAGCTCTCCAGGACATTGAAATTGCTTCCGCATTAGTCGGTTTTGATGCCGATAGTGATGACTCTTTGGATGAGAAGTATAAGAAGCTCCGGTGTTGTATGAATCCACTACTCCACGATAGTGAAGATTATCGGTTGATTGAAAAGTATCTGCTTACTACTCATGCCCCTACACATACGGTGGGTTTGCATTTTGATACTCTAGTGCATATTGTCCTGATTCTTATGGATGAGTGGAATATAAAACCTCCTAGTTGGGTGAGTGCCGATCCTTGTGACGGCTGGGAAGATAAGAAAAATCCTGTGGGCCTCATGCTTTTAAGTGAAGTTTCCTTGGGAGAGATCCATGAGCTCATGAAGGCCACATATATGGATAAACCTCCTAAGGGAAAGCACTCTACGAAGGGACTTGGCAAGAAAAAACCTGACTCAAGTATTGTGGATCCGAAAATGTTACTGGAACTCTTCTCGATGTACCGTGAGTGGCAGGAGGAGAATGTCAAAAAGCTGAGCCAAAAACAGGTAGAGATTGGGGAACTTAAAGGAAGGTTGACGGAGGTTATTAGCAACCGTGATGCGGTGTGCAAGAGAATATCCGCGAAGGACCGAGATTGTCGAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0003950 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006464 GO:0006471 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016070 GO:0016740 GO:0016757 GO:0016763 GO:0016874 GO:0016886 GO:0019538 GO:0022616 GO:0033554 GO:0033993 GO:0034641 GO:0034645 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0071704 GO:0090304 GO:0097305 GO:0140097 GO:1901360 GO:1901564 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 map03410 map04210 map04212 map04214 map04217

Pfam Domains

Protein Families

BRCT PADR1 PARP PARP_reg WGR zf-PARP

Protein Analysis

290

Amino Acids

33.33

Weight (kDa)

5.32

Isoelectric Point (pI)

46.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PARP	PF00644	179 - 228	1.5e-11	Poly(ADP-ribose) polymerase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66290 AT5G66290
fragaria_vesca	FvH4_1g12000 FvH4_2g21980
malus_domestica	MD02G1134200.v1.1 MD15G1247200.v1.1
prunus_persica	Prupe.7G166600_v2.0.a1 Prupe.7G166600_v2.0.a1
pyrus_communis	pycom02g10580
rosa_chinensis	RchiOBHm_Chr0c39g0503221 RchiOBHm_Chr1g0353231 RchiOBHm_Chr2g0099641 RchiOBHm_Chr2g0126361 RchiOBHm_Chr5g0080231
rosa_laevigata	RLG00000008117 RLG00000016900 RLG00000021865
rosa_multiflora	Rmu_sc0000394.1_g000010 Rmu_sc0000543.1_g000026 Rmu_sc0005120.1_g000016 Rmu_sc0006325.1_g000056 Rmu_sc0010438.1_g000001 Rmu_sc0035741.1_g000001 Rmu_ssc0000366.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142880 Rroxscaffold_3G00248750 Rroxscaffold_5G00378640 Rroxscaffold_5G00382790 Rroxscaffold_7G00190790
rosa_rugosa	Rorug02G0081700 Rorug02G0258300 Rorug06G0170500
rosa_samantha	Rh1CG034700 Rh1DG035400 Rh2AG131100 Rh2AG189600 Rh2AG189700 Rh2BG134500 Rh2BG230100 Rh2BG328200 Rh2CG135300 Rh2DG135900 Rh2DG196000 Rh2DG196100 Rh2DG196200 Rh3DG312100 Rh4CG305000 Rh4DG111800 Rh5AG369300 Rh5AG496200 Rh5AG496300 Rh5BG555300 Rh5CG578200 Rh5DG254100 Rh5DG254200 Rh6BG167500 Rh6BG167600 Rh6BG241100 Rh7AG282200 Rh7CG301400 Rh7CG301500 Rh7DG435700 Rh7DG435800
rosa_wichuraiana	Rw0G008970 Rw2G010150 Rw3G024850 Rw4G013560 Rw5G022800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	20
AccII	CGCG	1 cut(s)	848
AciI	CCGC	5 cut(s)	18, 105, 279, 827, 846
AclWI	GGATC	4 cut(s)	512, 586, 686, 699
AfaI	GTAC	1 cut(s)	725
AfiI	CCNNNNNNNGG	5 cut(s)	111, 527, 635, 769, 826
AgsI	TTSAA	4 cut(s)	203, 241, 269, 392
AjnI	CCWGG	1 cut(s)	258
AleI	CACNNNNGTG	1 cut(s)	369
AluBI	AGCT	4 cut(s)	254, 337, 601, 757
AluI	AGCT	4 cut(s)	254, 337, 601, 757
Alw21I	GWGCWC	1 cut(s)	603
Alw26I	GTCTC	2 cut(s)	45, 106
AlwI	GGATC	4 cut(s)	512, 586, 686, 699
AoxI	GGCC	3 cut(s)	80, 556, 609
AspS9I	GGNCC	3 cut(s)	140, 556, 853
AsuHPI	GGTGA	1 cut(s)	520
AvaII	GGWCC	2 cut(s)	140, 853
AxyI	CCTNAGG	1 cut(s)	633
BaeI	ACNNNNGTAYC	2 cut(s)	438, 471
BamHI	GGATCC	1 cut(s)	691
BanII	GRGCYC	1 cut(s)	603
BbsI	GAAGAC	1 cut(s)	196
Bbv12I	GWGCWC	1 cut(s)	603
BccI	CCATC	1 cut(s)	91
BceAI	ACGGC	1 cut(s)	544
BciT130I	CCWGG	1 cut(s)	260
BcoDI	GTCTC	2 cut(s)	45, 106
BfaI	CTAG	4 cut(s)	152, 248, 452, 501
BglII	AGATCT	1 cut(s)	154
BlpI	GCTNAGC	1 cut(s)	758
Bme1390I	CCNGG	1 cut(s)	260
Bme18I	GGWCC	2 cut(s)	140, 853
BmgT120I	GGNCC	3 cut(s)	140, 556, 853
BmiI	GGNNCC	1 cut(s)	693
BmrFI	CCNGG	1 cut(s)	260
BmsI	GCATC	2 cut(s)	286, 814
BpiI	GAAGAC	1 cut(s)	196
BpmI	CTGGAG	1 cut(s)	242
Bpu1102I	GCTNAGC	1 cut(s)	758
BpuEI	CTTGAG	1 cut(s)	664
BsaI	GGTCTC	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	582
BsaWI	WCCGGW	1 cut(s)	339
Bsc4I	CCNNNNNNNGG	5 cut(s)	111, 527, 635, 769, 826
Bse1I	ACTGG	1 cut(s)	711
Bse21I	CCTNAGG	1 cut(s)	633
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	1 cut(s)	582
BseGI	GGATG	3 cut(s)	10, 325, 484
BseLI	CCNNNNNNNGG	5 cut(s)	111, 527, 635, 769, 826
BseMII	CTCAG	2 cut(s)	61, 749
BseNI	ACTGG	1 cut(s)	711
BseRI	GAGGAG	4 cut(s)	4, 194, 197, 755
BseYI	CCCAGC	1 cut(s)	531
Bsh1236I	CGCG	1 cut(s)	848
BshFI	GGCC	3 cut(s)	82, 558, 611
BsiHKAI	GWGCWC	1 cut(s)	603
BsiSI	CCGG	1 cut(s)	340
BslFI	GGGAC	1 cut(s)	669
BslI	CCNNNNNNNGG	5 cut(s)	111, 527, 635, 769, 826
BsmAI	GTCTC	2 cut(s)	45, 106
BsmFI	GGGAC	1 cut(s)	669
BsnI	GGCC	3 cut(s)	82, 558, 611
Bso31I	GGTCTC	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	603
Bsp143I	GATC	6 cut(s)	154, 209, 219, 517, 591, 691
Bsp1720I	GCTNAGC	1 cut(s)	758
BspACI	CCGC	5 cut(s)	18, 105, 279, 827, 846
BspANI	GGCC	3 cut(s)	82, 558, 611
BspCNI	CTCAG	2 cut(s)	60, 750
BspFNI	CGCG	1 cut(s)	848
BspHI	TCATGA	1 cut(s)	603
BspLI	GGNNCC	1 cut(s)	693
BspPI	GGATC	4 cut(s)	512, 586, 686, 699
BspTNI	GGTCTC	1 cut(s)	106
BsrBI	CCGCTC	1 cut(s)	20
BsrI	ACTGG	1 cut(s)	711
BssECI	CCNNGG	1 cut(s)	582
BssMI	GATC	6 cut(s)	154, 209, 219, 517, 591, 691
BssT1I	CCWWGG	1 cut(s)	582
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	3 cut(s)	430, 728, 821
Bst6I	CTCTTC	1 cut(s)	719
BstDEI	CTNAG	3 cut(s)	47, 633, 758
BstF5I	GGATG	3 cut(s)	10, 325, 484
BstFNI	CGCG	1 cut(s)	848
BstKTI	GATC	6 cut(s)	157, 212, 222, 520, 594, 694
BstMAI	GTCTC	2 cut(s)	45, 106
BstMBI	GATC	6 cut(s)	154, 209, 219, 517, 591, 691
BstNI	CCWGG	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	258
BstUI	CGCG	1 cut(s)	848
BstV2I	GAAGAC	1 cut(s)	196
BstX2I	RGATCY	3 cut(s)	154, 591, 691
BstXI	CCANNNNNNTGG	1 cut(s)	619
BstYI	RGATCY	3 cut(s)	154, 591, 691
Bsu36I	CCTNAGG	1 cut(s)	633
BsuRI	GGCC	3 cut(s)	82, 558, 611
BtsCI	GGATG	3 cut(s)	10, 325, 484
CciI	TCATGA	1 cut(s)	603
Cfr13I	GGNCC	3 cut(s)	140, 556, 853
Csp6I	GTAC	1 cut(s)	724
CspCI	CAANNNNNGTGG	2 cut(s)	669, 704
CviAII	CATG	5 cut(s)	75, 413, 562, 596, 604
CviQI	GTAC	1 cut(s)	724
DdeI	CTNAG	3 cut(s)	47, 633, 758
DpnI	GATC	6 cut(s)	156, 211, 221, 519, 593, 693
DpnII	GATC	6 cut(s)	154, 209, 219, 517, 591, 691
Eam1104I	CTCTTC	1 cut(s)	719
EarI	CTCTTC	1 cut(s)	719
EciI	GGCGGA	1 cut(s)	94
Ecl136II	GAGCTC	1 cut(s)	601
Eco130I	CCWWGG	1 cut(s)	582
Eco24I	GRGCYC	1 cut(s)	603
Eco31I	GGTCTC	1 cut(s)	106
Eco32I	GATATC	1 cut(s)	61
Eco47I	GGWCC	2 cut(s)	140, 853
Eco53kI	GAGCTC	1 cut(s)	601
Eco81I	CCTNAGG	1 cut(s)	633
EcoICRI	GAGCTC	1 cut(s)	601
EcoRII	CCWGG	1 cut(s)	258
EcoRV	GATATC	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	582
EcoT38I	GRGCYC	1 cut(s)	603
ErhI	CCWWGG	1 cut(s)	582
FaeI	CATG	5 cut(s)	78, 416, 565, 599, 607
FaqI	GGGAC	1 cut(s)	669
FatI	CATG	5 cut(s)	74, 412, 561, 595, 603
FokI	GGATG	3 cut(s)	17, 332, 491
FriOI	GRGCYC	1 cut(s)	603
FspBI	CTAG	4 cut(s)	152, 248, 452, 501
GsaI	CCCAGC	1 cut(s)	535
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	3 cut(s)	82, 558, 611
HapII	CCGG	1 cut(s)	340
Hin1II	CATG	5 cut(s)	78, 416, 565, 599, 607
HincII	GTYRAC	1 cut(s)	801
HindII	GTYRAC	1 cut(s)	801
HinfI	GANTC	6 cut(s)	11, 170, 311, 352, 469, 677
HpaII	CCGG	1 cut(s)	340
HphI	GGTGA	1 cut(s)	520
Hpy166II	GTNNAC	1 cut(s)	801
Hpy188I	TCNGA	2 cut(s)	50, 696
Hpy188III	TCNNGA	3 cut(s)	466, 604, 718
Hpy8I	GTNNAC	1 cut(s)	801
HpyAV	CCTTC	6 cut(s)	91, 131, 601, 646, 789, 844
HpyCH4III	ACNGT	3 cut(s)	430, 728, 821
HpyCH4V	TGCA	3 cut(s)	439, 457, 834
HpyF3I	CTNAG	3 cut(s)	47, 633, 758
Hsp92II	CATG	5 cut(s)	78, 416, 565, 599, 607
Kzo9I	GATC	6 cut(s)	154, 209, 219, 517, 591, 691
LmnI	GCTCC	1 cut(s)	342
LweI	GCATC	2 cut(s)	286, 814
MaeI	CTAG	4 cut(s)	152, 248, 452, 501
MaeIII	GTNAC	2 cut(s)	524, 702
MalI	GATC	6 cut(s)	156, 211, 221, 519, 593, 693
MbiI	CCGCTC	1 cut(s)	20
MboI	GATC	6 cut(s)	154, 209, 219, 517, 591, 691
MboII	GAAGA	6 cut(s)	146, 201, 215, 386, 548, 706
MflI	RGATCY	3 cut(s)	154, 591, 691
MhlI	GDGCHC	1 cut(s)	603
MluCI	AATT	1 cut(s)	270
MlyI	GAGTC	3 cut(s)	5, 305, 671
MseI	TTAA	2 cut(s)	569, 789
MslI	CAYNNNNRTG	3 cut(s)	68, 369, 617
MspI	CCGG	1 cut(s)	340
MspR9I	CCNGG	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	260
MvnI	CGCG	1 cut(s)	848
NdeII	GATC	6 cut(s)	154, 209, 219, 517, 591, 691
NlaIII	CATG	5 cut(s)	78, 416, 565, 599, 607
NlaIV	GGNNCC	1 cut(s)	693
NmuCI	GTSAC	1 cut(s)	524
OliI	CACNNNNGTG	1 cut(s)	369
PagI	TCATGA	1 cut(s)	603
PfeI	GAWTC	3 cut(s)	170, 352, 469
PfoI	TCCNGGA	1 cut(s)	258
PleI	GAGTC	3 cut(s)	5, 305, 671
PpsI	GAGTC	3 cut(s)	5, 305, 671
Psp124BI	GAGCTC	1 cut(s)	603
Psp6I	CCWGG	1 cut(s)	258
PspFI	CCCAGC	1 cut(s)	531
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	693
PspPI	GGNCC	3 cut(s)	140, 556, 853
PsuI	RGATCY	3 cut(s)	154, 591, 691
RsaI	GTAC	1 cut(s)	725
RsaNI	GTAC	1 cut(s)	724
RseI	CAYNNNNRTG	3 cut(s)	68, 369, 617
SacI	GAGCTC	1 cut(s)	603
SaqAI	TTAA	2 cut(s)	569, 789
Sau3AI	GATC	6 cut(s)	154, 209, 219, 517, 591, 691
Sau96I	GGNCC	3 cut(s)	140, 556, 853
SchI	GAGTC	3 cut(s)	5, 305, 671
ScrFI	CCNGG	1 cut(s)	260
SduI	GDGCHC	1 cut(s)	603
SfaNI	GCATC	2 cut(s)	286, 814
SinI	GGWCC	2 cut(s)	140, 853
SmiMI	CAYNNNNRTG	3 cut(s)	68, 369, 617
SmlI	CTYRAG	1 cut(s)	679
SmoI	CTYRAG	1 cut(s)	679
Sse9I	AATT	1 cut(s)	270
SsiI	CCGC	5 cut(s)	18, 105, 279, 827, 846
SspMI	CTAG	4 cut(s)	152, 248, 452, 501
SstI	GAGCTC	1 cut(s)	603
StyD4I	CCNGG	1 cut(s)	258
StyI	CCWWGG	1 cut(s)	582
TaaI	ACNGT	3 cut(s)	430, 728, 821
TaqI	TCGA	3 cut(s)	218, 719, 865
TaqII	GACCGA	2 cut(s)	157, 870
TasI	AATT	1 cut(s)	270
TfiI	GAWTC	3 cut(s)	170, 352, 469
Tru1I	TTAA	2 cut(s)	569, 789
Tru9I	TTAA	2 cut(s)	569, 789
TseFI	GTSAC	1 cut(s)	524
Tsp45I	GTSAC	1 cut(s)	524
TspDTI	ATGAA	3 cut(s)	110, 365, 620
TspGWI	ACGGA	1 cut(s)	818
VpaK11BI	GGWCC	2 cut(s)	140, 853
XspI	CTAG	4 cut(s)	152, 248, 452, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.