Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00346

Orthogroup ID

OG0000811

Physical Location & Seq

Genomic Coordinates Forward (+)

99327 .. 100720

Gene Structure 1394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G008970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGTTCAGCACAGCTCTCAGCTATATTTGTATGCGTATTCTCGGAGAAGGACCTGATGATGGGGGCCAAGACAATGCTTGTCCAAGAGCTAGAAAGTGGATTCTTGATCATGATGGTGTCACACACATGCCCTCTTGGGGAAAGACTTGGCTTTCGGCAGAAGCTGTTGTCAGTGCTGCTCTATCATGCCTAACTACAGGTAAATCAGGAGAGCAATGTAAGGACCCAGCATTGACTTTTAGCCAGGTAAACTTGAAGGTCTTTCGTGGACCACTAGTCGATGAGATTCACCAAGAGTTCAGTTCATGGATCTATCAGAGAGTTGGAACTCTTCTGGTATCCGAGATCCTTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0019742 GO:0019745 GO:0031559 GO:0042300 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

118

Amino Acids

13.0

Weight (kDa)

5.49

Isoelectric Point (pI)

37.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66290 AT5G66290
fragaria_vesca	FvH4_1g12000 FvH4_2g21980
malus_domestica	MD02G1134200.v1.1 MD15G1247200.v1.1
prunus_persica	Prupe.7G166600_v2.0.a1 Prupe.7G166600_v2.0.a1
pyrus_communis	pycom02g10580
rosa_chinensis	RchiOBHm_Chr0c39g0503221 RchiOBHm_Chr1g0353231 RchiOBHm_Chr2g0099641 RchiOBHm_Chr2g0126361 RchiOBHm_Chr5g0080231
rosa_laevigata	RLG00000008117 RLG00000016900 RLG00000021865
rosa_multiflora	Rmu_sc0000394.1_g000010 Rmu_sc0000543.1_g000026 Rmu_sc0005120.1_g000016 Rmu_sc0006325.1_g000056 Rmu_sc0010438.1_g000001 Rmu_sc0035741.1_g000001 Rmu_ssc0000366.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142880 Rroxscaffold_3G00248750 Rroxscaffold_5G00378640 Rroxscaffold_5G00382790 Rroxscaffold_7G00190790
rosa_rugosa	Rorug02G0081700 Rorug02G0258300 Rorug06G0170500
rosa_samantha	Rh1CG034700 Rh1DG035400 Rh2AG131100 Rh2AG189600 Rh2AG189700 Rh2BG134500 Rh2BG230100 Rh2BG328200 Rh2CG135300 Rh2DG135900 Rh2DG196000 Rh2DG196100 Rh2DG196200 Rh3DG312100 Rh4CG305000 Rh4DG111800 Rh5AG369300 Rh5AG496200 Rh5AG496300 Rh5BG555300 Rh5CG578200 Rh5DG254100 Rh5DG254200 Rh6BG167500 Rh6BG167600 Rh6BG241100 Rh7AG282200 Rh7CG301400 Rh7CG301500 Rh7DG435700 Rh7DG435800
rosa_wichuraiana	Rw0G008970 Rw2G010150 Rw3G024850 Rw4G013560 Rw5G022800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	317, 340
AfiI	CCNNNNNNNGG	2 cut(s)	59, 137
AgsI	TTSAA	1 cut(s)	256
AhdI	GACNNNNNGTC	1 cut(s)	275
AhlI	ACTAGT	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	243
AluBI	AGCT	4 cut(s)	14, 21, 89, 164
AluI	AGCT	4 cut(s)	14, 21, 89, 164
AlwI	GGATC	2 cut(s)	317, 340
AlwNI	CAGNNNCTG	1 cut(s)	164
AoxI	GGCC	1 cut(s)	64
ApeKI	GCWGC	1 cut(s)	176
ArsI	GACNNNNNNTTYG	2 cut(s)	136, 168
AspS9I	GGNCC	4 cut(s)	50, 64, 223, 269
AsuHPI	GGTGA	1 cut(s)	281
AvaII	GGWCC	3 cut(s)	50, 223, 269
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	2 cut(s)	53, 107
BciT130I	CCWGG	1 cut(s)	245
BciVI	GTATCC	1 cut(s)	349
BclI	TGATCA	1 cut(s)	106
BcuI	ACTAGT	1 cut(s)	274
BfaI	CTAG	2 cut(s)	90, 275
BfmI	CTRYAG	1 cut(s)	195
BfuI	GTATCC	1 cut(s)	349
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bme1390I	CCNGG	1 cut(s)	245
Bme18I	GGWCC	3 cut(s)	50, 223, 269
BmeRI	GACNNNNNGTC	1 cut(s)	275
BmgT120I	GGNCC	4 cut(s)	50, 64, 223, 269
BmiI	GGNNCC	2 cut(s)	65, 225
BmrFI	CCNGG	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 137
Bse3DI	GCAATG	1 cut(s)	221
BseBI	CCWGG	1 cut(s)	245
BseLI	CCNNNNNNNGG	2 cut(s)	59, 137
BseMI	GCAATG	1 cut(s)	221
BseMII	CTCAG	1 cut(s)	31
BseXI	GCAGC	1 cut(s)	163
BseYI	CCCAGC	1 cut(s)	226
BshFI	GGCC	1 cut(s)	66
BslI	CCNNNNNNNGG	2 cut(s)	59, 137
BsnI	GGCC	1 cut(s)	66
Bsp143I	GATC	3 cut(s)	106, 309, 345
BspANI	GGCC	1 cut(s)	66
BspCNI	CTCAG	1 cut(s)	30
BspHI	TCATGA	1 cut(s)	109
BspLI	GGNNCC	2 cut(s)	65, 225
BspPI	GGATC	2 cut(s)	317, 340
BsrDI	GCAATG	1 cut(s)	221
BssMI	GATC	3 cut(s)	106, 309, 345
Bst2UI	CCWGG	1 cut(s)	245
Bst6I	CTCTTC	1 cut(s)	336
BstDEI	CTNAG	1 cut(s)	17
BstKTI	GATC	3 cut(s)	109, 312, 348
BstMBI	GATC	3 cut(s)	106, 309, 345
BstNI	CCWGG	1 cut(s)	245
BstNSI	RCATGY	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	243
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	163
BstX2I	RGATCY	2 cut(s)	309, 345
BstYI	RGATCY	2 cut(s)	309, 345
BsuI	GTATCC	1 cut(s)	349
BsuRI	GGCC	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	178
CaiI	CAGNNNCTG	1 cut(s)	164
CciI	TCATGA	1 cut(s)	109
Cfr13I	GGNCC	4 cut(s)	50, 64, 223, 269
CviAII	CATG	4 cut(s)	110, 127, 186, 306
CviJI	RGCY	7 cut(s)	14, 21, 66, 89, 151, 164, 243
CviKI_1	RGCY	7 cut(s)	14, 21, 66, 89, 151, 164, 243
DdeI	CTNAG	1 cut(s)	17
DpnI	GATC	3 cut(s)	108, 311, 347
DpnII	GATC	3 cut(s)	106, 309, 345
DriI	GACNNNNNGTC	1 cut(s)	275
Eam1104I	CTCTTC	1 cut(s)	336
Eam1105I	GACNNNNNGTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	336
Eco47I	GGWCC	3 cut(s)	50, 223, 269
EcoO109I	RGGNCCY	2 cut(s)	50, 223
EcoRII	CCWGG	1 cut(s)	243
FaeI	CATG	4 cut(s)	113, 130, 189, 309
FaiI	YATR	6 cut(s)	24, 32, 111, 128, 187, 307
FatI	CATG	4 cut(s)	109, 126, 185, 305
FbaI	TGATCA	1 cut(s)	106
Fnu4HI	GCNGC	1 cut(s)	177
Fsp4HI	GCNGC	1 cut(s)	177
FspBI	CTAG	2 cut(s)	90, 275
GluI	GCNGC	1 cut(s)	177
GsaI	CCCAGC	1 cut(s)	230
HaeIII	GGCC	1 cut(s)	66
Hin1II	CATG	4 cut(s)	113, 130, 189, 309
HinfI	GANTC	2 cut(s)	100, 286
HphI	GGTGA	1 cut(s)	281
Hpy166II	GTNNAC	2 cut(s)	250, 269
Hpy188I	TCNGA	3 cut(s)	44, 318, 343
Hpy188III	TCNNGA	3 cut(s)	104, 110, 207
Hpy8I	GTNNAC	2 cut(s)	250, 269
HpyAV	CCTTC	2 cut(s)	41, 250
HpyF3I	CTNAG	1 cut(s)	17
Hsp92II	CATG	4 cut(s)	113, 130, 189, 309
Ksp22I	TGATCA	1 cut(s)	106
Kzo9I	GATC	3 cut(s)	106, 309, 345
LpnPI	CCDG	7 cut(s)	66, 183, 192, 230, 240, 257, 320
Lsp1109I	GCAGC	1 cut(s)	163
MaeI	CTAG	2 cut(s)	90, 275
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	3 cut(s)	108, 311, 347
MboI	GATC	3 cut(s)	106, 309, 345
MboII	GAAGA	1 cut(s)	323
MflI	RGATCY	2 cut(s)	309, 345
MluCI	AATT	1 cut(s)	352
MmeI	TCCRAC	1 cut(s)	304
MnlI	CCTC	1 cut(s)	142
MseI	TTAA	1 cut(s)	351
MslI	CAYNNNNRTG	2 cut(s)	114, 125
MspR9I	CCNGG	1 cut(s)	245
MvaI	CCWGG	1 cut(s)	245
NdeII	GATC	3 cut(s)	106, 309, 345
NlaIII	CATG	4 cut(s)	113, 130, 189, 309
NlaIV	GGNNCC	2 cut(s)	65, 225
NmuCI	GTSAC	1 cut(s)	118
NspI	RCATGY	1 cut(s)	130
PagI	TCATGA	1 cut(s)	109
PfeI	GAWTC	2 cut(s)	100, 286
PkrI	GCNGC	1 cut(s)	178
PpuMI	RGGWCCY	2 cut(s)	50, 223
Psp5II	RGGWCCY	2 cut(s)	50, 223
Psp6I	CCWGG	1 cut(s)	243
PspFI	CCCAGC	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	243
PspN4I	GGNNCC	2 cut(s)	65, 225
PspPI	GGNCC	4 cut(s)	50, 64, 223, 269
PspPPI	RGGWCCY	2 cut(s)	50, 223
PstNI	CAGNNNCTG	1 cut(s)	164
PsuI	RGATCY	2 cut(s)	309, 345
RseI	CAYNNNNRTG	2 cut(s)	114, 125
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	3 cut(s)	106, 309, 345
Sau96I	GGNCC	4 cut(s)	50, 64, 223, 269
ScrFI	CCNGG	1 cut(s)	245
SetI	ASST	8 cut(s)	16, 23, 55, 91, 166, 202, 249, 261
SfcI	CTRYAG	1 cut(s)	195
SinI	GGWCC	3 cut(s)	50, 223, 269
SmiMI	CAYNNNNRTG	2 cut(s)	114, 125
SpeI	ACTAGT	1 cut(s)	274
Sse9I	AATT	1 cut(s)	352
SspMI	CTAG	2 cut(s)	90, 275
StyD4I	CCNGG	1 cut(s)	243
TaqI	TCGA	1 cut(s)	279
TasI	AATT	1 cut(s)	352
TfiI	GAWTC	2 cut(s)	100, 286
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	1 cut(s)	176
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	1 cut(s)	294
TspRI	CASTG	1 cut(s)	178
VpaK11BI	GGWCC	3 cut(s)	50, 223, 269
XceI	RCATGY	1 cut(s)	130
XspI	CTAG	2 cut(s)	90, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.