Rh5BG555300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000811
Physical Location & Seq
Reverse (-)
88329522 .. 88338742
9221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG555300.1

Sequence Viewer

Length: 807 bp
ATGGGAGCGGAGAAAGCAGAGGCGTCGTTGGATTCGTTGATCGCCGGGTTCAACAGTCAGATCTCAGAGCTCCAAGAGCTCGTTATTGCTCGAAATATCATTGTTTTTCTATTCTCCCAGAAAAGTTACAAGCCCCCTAAGAAGCCTTTAACAGAGAAGATGATCTATGTGAGGAATGGGGTTCCTGAACCTCTCATTCCTCCTATCACAGAAGATATGCAGTATGAACCCCCAGTGTTGGAAAGTGCTGCAGGGCCACATACAATAGTCAATGGCAAAGAAGTAATGATGAACTTTGCTTCAGCAAATTATCTTGGATTGATAGGACATGAGAAGTTGCTTTCGACGCCATTACTGACTTCACCCCCAAGTGAGGGTAGCTTGACTGACATTTTAGTGAGGAAACCTTCATCTTCTTCAGCTCCCAGTATTGTGGATCCGAAAGTGTTACTGGAACTCTTCTCGATGTACCGTGAGTGGCAGGAGGAGAATGTCAAAAAGCTGAGCCAAAAACAGGAAGAGATAGAGAACAAGATAGAAATTGCGGACGCGTTGTCTGTTAAACTTAAGCAACGTTTTAATTATTCAGTGACAGCAATGAAGACATCCTCGCAACATTTATGTGGAGTTCATGCACTGCAGGTAGAGATTGGGGAACTTAAAAGGAAGGTTGACGGAGAATGGACTCTATATGAGCAGGTTGCACTTACAGCCTTGGACTGCCAGTGTCTTGATGTTGCAAAGGACCTCATCAAGCTTTTACGAAAGGCATTTCCAGAGAGTAAAAGAGTTGGTAAGTCGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

268

Amino Acids

29.85

Weight (kDa)

6.47

Isoelectric Point (pI)

43.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 631, 688
AccBSI CCGCTC 1 cut(s) 8
AccII CGCG 1 cut(s) 551
AciI CCGC 2 cut(s) 8, 545
AclI AACGTT 1 cut(s) 574
AclWI GGATC 2 cut(s) 431, 444
AcuI CTGAAG 2 cut(s) 285, 402
AcyI GRCGYC 2 cut(s) 23, 347
AfaI GTAC 1 cut(s) 470
AfiI CCNNNNNNNGG 4 cut(s) 238, 373, 374, 514
AflII CTTAAG 1 cut(s) 566
AflIII ACRYGT 1 cut(s) 549
AgsI TTSAA 1 cut(s) 52
AhdI GACNNNNNGTC 1 cut(s) 553
AluBI AGCT 6 cut(s) 70, 79, 381, 422, 502, 757
AluI AGCT 6 cut(s) 70, 79, 381, 422, 502, 757
Alw21I GWGCWC 2 cut(s) 72, 81
AlwI GGATC 2 cut(s) 431, 444
AoxI GGCC 1 cut(s) 254
ApeKI GCWGC 1 cut(s) 248
AspS9I GGNCC 2 cut(s) 254, 745
AsuC2I CCSGG 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 354
AvaII GGWCC 1 cut(s) 745
BamHI GGATCC 1 cut(s) 436
BanII GRGCYC 2 cut(s) 72, 81
BbsI GAAGAC 1 cut(s) 608
Bbv12I GWGCWC 2 cut(s) 72, 81
BbvI GCAGC 1 cut(s) 235
BcgI CGANNNNNNTGC 2 cut(s) 6, 40
BcnI CCSGG 1 cut(s) 46
BfmI CTRYAG 2 cut(s) 249, 638
BfrI CTTAAG 1 cut(s) 566
BfuAI ACCTGC 2 cut(s) 631, 688
BglII AGATCT 1 cut(s) 60
BisI GCNGC 1 cut(s) 249
BlpI GCTNAGC 1 cut(s) 503
BlsI GCNGC 1 cut(s) 250
Bme1390I CCNGG 1 cut(s) 46
Bme18I GGWCC 1 cut(s) 745
BmeRI GACNNNNNGTC 1 cut(s) 553
BmgT120I GGNCC 2 cut(s) 254, 745
BmiI GGNNCC 2 cut(s) 183, 438
BmrFI CCNGG 1 cut(s) 46
BmrI ACTGGG 2 cut(s) 227, 420
BmuI ACTGGG 2 cut(s) 227, 420
BpiI GAAGAC 1 cut(s) 608
Bpu1102I GCTNAGC 1 cut(s) 503
BpuMI CCSGG 1 cut(s) 46
BsaHI GRCGYC 2 cut(s) 23, 347
BsaJI CCNNGG 1 cut(s) 714
Bsc4I CCNNNNNNNGG 4 cut(s) 238, 373, 374, 514
Bse1I ACTGG 4 cut(s) 233, 426, 456, 724
Bse3DI GCAATG 1 cut(s) 603
BseDI CCNNGG 1 cut(s) 714
BseGI GGATG 1 cut(s) 605
BseLI CCNNNNNNNGG 4 cut(s) 238, 373, 374, 514
BseMI GCAATG 1 cut(s) 603
BseMII CTCAG 2 cut(s) 78, 494
BseNI ACTGG 4 cut(s) 233, 426, 456, 724
BseRI GAGGAG 1 cut(s) 500
BseXI GCAGC 1 cut(s) 235
Bsh1236I CGCG 1 cut(s) 551
BshFI GGCC 1 cut(s) 256
BsiHKAI GWGCWC 2 cut(s) 72, 81
BsiSI CCGG 1 cut(s) 45
BslI CCNNNNNNNGG 4 cut(s) 238, 373, 374, 514
BsnI GGCC 1 cut(s) 256
Bsp1286I GDGCHC 2 cut(s) 72, 81
Bsp143I GATC 4 cut(s) 39, 60, 162, 436
Bsp1720I GCTNAGC 1 cut(s) 503
BspACI CCGC 2 cut(s) 8, 545
BspANI GGCC 1 cut(s) 256
BspCNI CTCAG 2 cut(s) 77, 495
BspFNI CGCG 1 cut(s) 551
BspLI GGNNCC 2 cut(s) 183, 438
BspMAI CTGCAG 2 cut(s) 253, 642
BspMI ACCTGC 2 cut(s) 631, 688
BspPI GGATC 2 cut(s) 431, 444
BspTI CTTAAG 1 cut(s) 566
BsrBI CCGCTC 1 cut(s) 8
BsrDI GCAATG 1 cut(s) 603
BsrI ACTGG 4 cut(s) 233, 426, 456, 724
BssECI CCNNGG 1 cut(s) 714
BssMI GATC 4 cut(s) 39, 60, 162, 436
BssNI GRCGYC 2 cut(s) 23, 347
BssT1I CCWWGG 1 cut(s) 714
Bst4CI ACNGT 2 cut(s) 56, 473
Bst6I CTCTTC 2 cut(s) 464, 513
BstACI GRCGYC 2 cut(s) 23, 347
BstAFI CTTAAG 1 cut(s) 566
BstDEI CTNAG 3 cut(s) 64, 138, 503
BstF5I GGATG 1 cut(s) 605
BstFNI CGCG 1 cut(s) 551
BstKTI GATC 4 cut(s) 42, 63, 165, 439
BstMBI GATC 4 cut(s) 39, 60, 162, 436
BstMWI GCNNNNNNNGC 4 cut(s) 14, 76, 346, 710
BstSCI CCNGG 1 cut(s) 44
BstSFI CTRYAG 2 cut(s) 249, 638
BstUI CGCG 1 cut(s) 551
BstV1I GCAGC 1 cut(s) 235
BstV2I GAAGAC 1 cut(s) 608
BstX2I RGATCY 2 cut(s) 60, 436
BstXI CCANNNNNNTGG 1 cut(s) 433
BstYI RGATCY 2 cut(s) 60, 436
BsuRI GGCC 1 cut(s) 256
BtsCI GGATG 1 cut(s) 605
BtsI GCAGTG 1 cut(s) 635
BtsIMutI CAGTG 4 cut(s) 240, 594, 635, 731
BveI ACCTGC 2 cut(s) 631, 688
Cfr13I GGNCC 2 cut(s) 254, 745
CseI GACGC 3 cut(s) 12, 355, 557
Csp6I GTAC 1 cut(s) 469
CviAII CATG 2 cut(s) 329, 632
CviQI GTAC 1 cut(s) 469
DdeI CTNAG 3 cut(s) 64, 138, 503
DpnI GATC 4 cut(s) 41, 62, 164, 438
DpnII GATC 4 cut(s) 39, 60, 162, 436
DriI GACNNNNNGTC 1 cut(s) 553
Eam1104I CTCTTC 2 cut(s) 464, 513
Eam1105I GACNNNNNGTC 1 cut(s) 553
EarI CTCTTC 2 cut(s) 464, 513
Ecl136II GAGCTC 2 cut(s) 70, 79
Eco130I CCWWGG 1 cut(s) 714
Eco24I GRGCYC 2 cut(s) 72, 81
Eco47I GGWCC 1 cut(s) 745
Eco53kI GAGCTC 2 cut(s) 70, 79
Eco57I CTGAAG 2 cut(s) 285, 402
EcoICRI GAGCTC 2 cut(s) 70, 79
EcoO109I RGGNCCY 1 cut(s) 745
EcoT14I CCWWGG 1 cut(s) 714
EcoT38I GRGCYC 2 cut(s) 72, 81
ErhI CCWWGG 1 cut(s) 714
FaeI CATG 2 cut(s) 332, 635
FaiI YATR 9 cut(s) 168, 218, 225, 261, 330, 622, 633, 691, 693
FatI CATG 2 cut(s) 328, 631
Fnu4HI GCNGC 1 cut(s) 249
FokI GGATG 1 cut(s) 592
FriOI GRGCYC 2 cut(s) 72, 81
Fsp4HI GCNGC 1 cut(s) 249
GluI GCNGC 1 cut(s) 249
HaeIII GGCC 1 cut(s) 256
HapII CCGG 1 cut(s) 45
HgaI GACGC 3 cut(s) 12, 355, 557
Hin1I GRCGYC 2 cut(s) 23, 347
Hin1II CATG 2 cut(s) 332, 635
HincII GTYRAC 1 cut(s) 673
HindII GTYRAC 1 cut(s) 673
HindIII AAGCTT 1 cut(s) 755
HinfI GANTC 2 cut(s) 32, 685
HpaII CCGG 1 cut(s) 45
HphI GGTGA 1 cut(s) 354
Hpy166II GTNNAC 1 cut(s) 673
Hpy188I TCNGA 3 cut(s) 60, 67, 441
Hpy188III TCNNGA 4 cut(s) 185, 463, 731, 776
Hpy8I GTNNAC 1 cut(s) 673
Hpy99I CGWCG 2 cut(s) 28, 349
HpyAV CCTTC 2 cut(s) 417, 661
HpyCH4III ACNGT 2 cut(s) 56, 473
HpyCH4IV ACGT 1 cut(s) 574
HpyCH4V TGCA 6 cut(s) 220, 251, 635, 640, 704, 740
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 76, 346, 710
HpyF3I CTNAG 3 cut(s) 64, 138, 503
HpySE526I ACGT 1 cut(s) 574
Hsp92I GRCGYC 2 cut(s) 23, 347
Hsp92II CATG 2 cut(s) 332, 635
Kzo9I GATC 4 cut(s) 39, 60, 162, 436
LmnI GCTCC 3 cut(s) 5, 75, 427
Lsp1109I GCAGC 1 cut(s) 235
MaeII ACGT 1 cut(s) 574
MaeIII GTNAC 3 cut(s) 125, 447, 589
MalI GATC 4 cut(s) 41, 62, 164, 438
MbiI CCGCTC 1 cut(s) 8
MboI GATC 4 cut(s) 39, 60, 162, 436
MboII GAAGA 7 cut(s) 169, 224, 405, 408, 451, 530, 613
MflI RGATCY 2 cut(s) 60, 436
MhlI GDGCHC 2 cut(s) 72, 81
MluCI AATT 3 cut(s) 307, 540, 580
MluI ACGCGT 1 cut(s) 549
MlyI GAGTC 1 cut(s) 679
MmeI TCCRAC 2 cut(s) 9, 219
MnlI CCTC 9 cut(s) 13, 165, 201, 210, 367, 393, 478, 619, 758
MseI TTAA 5 cut(s) 149, 561, 567, 579, 660
MslI CAYNNNNRTG 2 cut(s) 395, 621
MspCI CTTAAG 1 cut(s) 566
MspI CCGG 1 cut(s) 45
MspR9I CCNGG 1 cut(s) 46
MvnI CGCG 1 cut(s) 551
MwoI GCNNNNNNNGC 4 cut(s) 14, 76, 346, 710
NciI CCSGG 1 cut(s) 46
NdeII GATC 4 cut(s) 39, 60, 162, 436
NlaIII CATG 2 cut(s) 332, 635
NlaIV GGNNCC 2 cut(s) 183, 438
NmuCI GTSAC 1 cut(s) 589
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PfeI GAWTC 1 cut(s) 32
PkrI GCNGC 1 cut(s) 250
PleI GAGTC 1 cut(s) 679
PpsI GAGTC 1 cut(s) 679
PpuMI RGGWCCY 1 cut(s) 745
Psp124BI GAGCTC 2 cut(s) 72, 81
Psp1406I AACGTT 1 cut(s) 574
Psp5II RGGWCCY 1 cut(s) 745
PspN4I GGNNCC 2 cut(s) 183, 438
PspPI GGNCC 2 cut(s) 254, 745
PspPPI RGGWCCY 1 cut(s) 745
PstI CTGCAG 2 cut(s) 253, 642
PsuI RGATCY 2 cut(s) 60, 436
RsaI GTAC 1 cut(s) 470
RsaNI GTAC 1 cut(s) 469
RseI CAYNNNNRTG 2 cut(s) 395, 621
SacI GAGCTC 2 cut(s) 72, 81
SaqAI TTAA 5 cut(s) 149, 561, 567, 579, 660
SatI GCNGC 1 cut(s) 249
Sau3AI GATC 4 cut(s) 39, 60, 162, 436
Sau96I GGNCC 2 cut(s) 254, 745
SchI GAGTC 1 cut(s) 679
ScrFI CCNGG 1 cut(s) 46
SduI GDGCHC 2 cut(s) 72, 81
SfcI CTRYAG 2 cut(s) 249, 638
SinI GGWCC 1 cut(s) 745
SmiMI CAYNNNNRTG 2 cut(s) 395, 621
SmlI CTYRAG 1 cut(s) 566
SmoI CTYRAG 1 cut(s) 566
Sse9I AATT 3 cut(s) 307, 540, 580
SsiI CCGC 2 cut(s) 8, 545
SstI GAGCTC 2 cut(s) 72, 81
StyD4I CCNGG 1 cut(s) 44
StyI CCWWGG 1 cut(s) 714
TaaI ACNGT 2 cut(s) 56, 473
TaiI ACGT 1 cut(s) 577
TaqI TCGA 4 cut(s) 91, 344, 464, 800
TasI AATT 3 cut(s) 307, 540, 580
TfiI GAWTC 1 cut(s) 32
Tru1I TTAA 5 cut(s) 149, 561, 567, 579, 660
Tru9I TTAA 5 cut(s) 149, 561, 567, 579, 660
TscAI CASTG 4 cut(s) 240, 594, 642, 731
TseFI GTSAC 1 cut(s) 589
TseI GCWGC 1 cut(s) 248
Tsp45I GTSAC 1 cut(s) 589
TspDTI ATGAA 5 cut(s) 240, 305, 399, 614, 620
TspGWI ACGGA 1 cut(s) 690
TspRI CASTG 4 cut(s) 240, 594, 642, 731
Vha464I CTTAAG 1 cut(s) 566
VpaK11BI GGWCC 1 cut(s) 745
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.