Rorug02G0258300

belongs to the NAD synthetase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
27210318 .. 27211459
1142 bp
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UTR
Exon/CDS
Intron
Rorug02G0258300.1

Sequence Viewer

Length: 246 bp
ATGGTTGTGATTGTGGTAGTGGGTATGGTTCTTCTGGCGCATGCAGATGCATGTGGCAAGAAATTTCAGAATGTTACTATGGCAAAGCGGAAGTCTTTTGCATCTGTCAGCATGCCGGATGATAAGCCATTTGATTTCTTACGTACTTTTTTTGAGGGTGTTATAGCAGGAGGTACAGCTGGGGTGGTTGTTGAAACAGCTTTATATCCCATTGATACTATAAAGACAAGATTGCAGGCAGGTTAA

Protein Analysis

81

Amino Acids

8.68

Weight (kDa)

8.93

Isoelectric Point (pI)

27.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 49 - 80 9.5e-08 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 230
AciI CCGC 1 cut(s) 88
AcsI RAATTY 1 cut(s) 62
AfaI GTAC 2 cut(s) 145, 175
AgsI TTSAA 1 cut(s) 194
AluBI AGCT 2 cut(s) 179, 200
AluI AGCT 2 cut(s) 179, 200
ApoI RAATTY 1 cut(s) 62
ArsI GACNNNNNNTTYG 2 cut(s) 77, 109
AspLEI GCGC 1 cut(s) 40
BfuAI ACCTGC 1 cut(s) 230
BmsI GCATC 2 cut(s) 37, 110
BsaAI YACGTR 1 cut(s) 143
BseGI GGATG 1 cut(s) 124
BseYI CCCAGC 1 cut(s) 179
BsiSI CCGG 1 cut(s) 116
BspACI CCGC 1 cut(s) 88
BspMI ACCTGC 1 cut(s) 230
BstBAI YACGTR 1 cut(s) 143
BstC8I GCNNGC 3 cut(s) 42, 113, 237
BstF5I GGATG 1 cut(s) 124
BstHHI GCGC 1 cut(s) 40
BstNSI RCATGY 3 cut(s) 44, 54, 115
BstSNI TACGTA 1 cut(s) 143
BtsCI GGATG 1 cut(s) 124
BveI ACCTGC 1 cut(s) 230
Cac8I GCNNGC 3 cut(s) 42, 113, 237
CfoI GCGC 1 cut(s) 40
Csp6I GTAC 2 cut(s) 144, 174
CviAII CATG 3 cut(s) 41, 51, 112
CviJI RGCY 3 cut(s) 127, 179, 200
CviKI_1 RGCY 3 cut(s) 127, 179, 200
CviQI GTAC 2 cut(s) 144, 174
Eco105I TACGTA 1 cut(s) 143
EcoT22I ATGCAT 1 cut(s) 52
FaeI CATG 3 cut(s) 44, 54, 115
FaiI YATR 8 cut(s) 26, 42, 52, 80, 113, 164, 205, 221
FatI CATG 3 cut(s) 40, 50, 111
FokI GGATG 1 cut(s) 131
GlaI GCGC 1 cut(s) 39
GsaI CCCAGC 1 cut(s) 183
HapII CCGG 1 cut(s) 116
HhaI GCGC 1 cut(s) 40
Hin1II CATG 3 cut(s) 44, 54, 115
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HpaII CCGG 1 cut(s) 116
Hpy188I TCNGA 1 cut(s) 69
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 4 cut(s) 44, 50, 101, 235
HpySE526I ACGT 1 cut(s) 142
Hsp92II CATG 3 cut(s) 44, 54, 115
HspAI GCGC 1 cut(s) 38
LpnPI CCDG 6 cut(s) 20, 129, 153, 165, 221, 225
LweI GCATC 2 cut(s) 37, 110
MaeII ACGT 1 cut(s) 142
MaeIII GTNAC 1 cut(s) 73
MboII GAAGA 1 cut(s) 23
MluCI AATT 1 cut(s) 62
MnlI CCTC 2 cut(s) 148, 164
Mph1103I ATGCAT 1 cut(s) 52
MseI TTAA 1 cut(s) 244
MslI CAYNNNNRTG 1 cut(s) 45
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 1 cut(s) 116
NlaIII CATG 3 cut(s) 44, 54, 115
NsiI ATGCAT 1 cut(s) 52
NspI RCATGY 3 cut(s) 44, 54, 115
PaeI GCATGC 2 cut(s) 44, 115
Ppu21I YACGTR 1 cut(s) 143
PspFI CCCAGC 1 cut(s) 179
PvuII CAGCTG 1 cut(s) 179
RsaI GTAC 2 cut(s) 145, 175
RsaNI GTAC 2 cut(s) 144, 174
RseI CAYNNNNRTG 1 cut(s) 45
SaqAI TTAA 1 cut(s) 244
SetI ASST 5 cut(s) 145, 175, 181, 202, 244
SfaNI GCATC 2 cut(s) 37, 110
SgeI CNNG 9 cut(s) 47, 53, 63, 70, 124, 128, 180, 192, 240
SmiMI CAYNNNNRTG 1 cut(s) 45
SnaBI TACGTA 1 cut(s) 143
SphI GCATGC 2 cut(s) 44, 115
Sse9I AATT 1 cut(s) 62
SsiI CCGC 1 cut(s) 88
TaiI ACGT 1 cut(s) 145
TasI AATT 1 cut(s) 62
Tru1I TTAA 1 cut(s) 244
Tru9I TTAA 1 cut(s) 244
XapI RAATTY 1 cut(s) 62
XceI RCATGY 3 cut(s) 44, 54, 115
Zsp2I ATGCAT 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.