Rh5AG496200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000811
Physical Location & Seq
Reverse (-)
84331382 .. 84332679
1298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG496200.1

Sequence Viewer

Length: 222 bp
ATGATGTTGCCTATGGGTAAATATAGAACATCGACGCCATTACTGACTTCACCCCCAAGTGAGGGTAGCTTGACTGACATTTTAGTGAGGAAACCTTCGTCTTCTTCAGCTCCCAGTATTGTGGATCCGAAAGTGTTACTGGAACTCTTCTCGATGTACCGTGAGTGGCAGGAGGAGAATGTCAAAAAGCTGAGCCAAAAACAGTTCATGCACTGCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

8.36

Weight (kDa)

9.3

Isoelectric Point (pI)

51.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 207
AclWI GGATC 2 cut(s) 119, 132
AcuI CTGAAG 1 cut(s) 90
AcyI GRCGYC 1 cut(s) 35
AfaI GTAC 1 cut(s) 158
AfiI CCNNNNNNNGG 2 cut(s) 61, 62
AluBI AGCT 3 cut(s) 69, 110, 190
AluI AGCT 3 cut(s) 69, 110, 190
AlwI GGATC 2 cut(s) 119, 132
AsuHPI GGTGA 1 cut(s) 42
BamHI GGATCC 1 cut(s) 124
BbsI GAAGAC 1 cut(s) 93
BfmI CTRYAG 1 cut(s) 214
BfuAI ACCTGC 1 cut(s) 207
BlpI GCTNAGC 1 cut(s) 191
BmiI GGNNCC 1 cut(s) 126
BmrI ACTGGG 1 cut(s) 108
BmuI ACTGGG 1 cut(s) 108
BpiI GAAGAC 1 cut(s) 93
Bpu1102I GCTNAGC 1 cut(s) 191
BsaHI GRCGYC 1 cut(s) 35
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 62
Bse1I ACTGG 2 cut(s) 114, 144
BseLI CCNNNNNNNGG 2 cut(s) 61, 62
BseMII CTCAG 1 cut(s) 182
BseNI ACTGG 2 cut(s) 114, 144
BseRI GAGGAG 1 cut(s) 188
BslI CCNNNNNNNGG 2 cut(s) 61, 62
Bsp143I GATC 1 cut(s) 124
Bsp1720I GCTNAGC 1 cut(s) 191
BspCNI CTCAG 1 cut(s) 183
BspLI GGNNCC 1 cut(s) 126
BspMAI CTGCAG 1 cut(s) 218
BspMI ACCTGC 1 cut(s) 207
BspPI GGATC 2 cut(s) 119, 132
BsrI ACTGG 2 cut(s) 114, 144
BssMI GATC 1 cut(s) 124
BssNI GRCGYC 1 cut(s) 35
Bst4CI ACNGT 2 cut(s) 161, 204
Bst6I CTCTTC 1 cut(s) 152
BstACI GRCGYC 1 cut(s) 35
BstDEI CTNAG 1 cut(s) 191
BstKTI GATC 1 cut(s) 127
BstMBI GATC 1 cut(s) 124
BstSFI CTRYAG 1 cut(s) 214
BstV2I GAAGAC 1 cut(s) 93
BstX2I RGATCY 1 cut(s) 124
BstXI CCANNNNNNTGG 1 cut(s) 121
BstYI RGATCY 1 cut(s) 124
BtsI GCAGTG 1 cut(s) 211
BtsIMutI CAGTG 1 cut(s) 211
BveI ACCTGC 1 cut(s) 207
CseI GACGC 1 cut(s) 43
Csp6I GTAC 1 cut(s) 157
CviAII CATG 1 cut(s) 208
CviJI RGCY 4 cut(s) 69, 110, 190, 195
CviKI_1 RGCY 4 cut(s) 69, 110, 190, 195
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 1 cut(s) 191
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 90
FaeI CATG 1 cut(s) 211
FaiI YATR 3 cut(s) 14, 24, 209
FatI CATG 1 cut(s) 207
HgaI GACGC 1 cut(s) 43
Hin1I GRCGYC 1 cut(s) 35
Hin1II CATG 1 cut(s) 211
HphI GGTGA 1 cut(s) 42
Hpy188I TCNGA 1 cut(s) 129
Hpy188III TCNNGA 1 cut(s) 151
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 1 cut(s) 105
HpyCH4III ACNGT 2 cut(s) 161, 204
HpyCH4V TGCA 2 cut(s) 211, 216
HpyF3I CTNAG 1 cut(s) 191
Hsp92I GRCGYC 1 cut(s) 35
Hsp92II CATG 1 cut(s) 211
Kzo9I GATC 1 cut(s) 124
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 4 cut(s) 125, 127, 155, 202
MaeIII GTNAC 1 cut(s) 135
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MboII GAAGA 3 cut(s) 93, 96, 139
MflI RGATCY 1 cut(s) 124
MnlI CCTC 3 cut(s) 55, 81, 166
MslI CAYNNNNRTG 1 cut(s) 83
NdeII GATC 1 cut(s) 124
NlaIII CATG 1 cut(s) 211
NlaIV GGNNCC 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 126
PstI CTGCAG 1 cut(s) 218
PsuI RGATCY 1 cut(s) 124
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
RseI CAYNNNNRTG 1 cut(s) 83
Sau3AI GATC 1 cut(s) 124
SetI ASST 5 cut(s) 71, 97, 112, 192, 221
SfcI CTRYAG 1 cut(s) 214
SgeI CNNG 7 cut(s) 69, 82, 126, 152, 163, 173, 182
SmiMI CAYNNNNRTG 1 cut(s) 83
TaaI ACNGT 2 cut(s) 161, 204
TaqI TCGA 2 cut(s) 32, 152
TscAI CASTG 1 cut(s) 218
TspDTI ATGAA 1 cut(s) 196
TspRI CASTG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.