Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000811

Physical Location & Seq

Genomic Coordinates Forward (+)

17982283 .. 17997421

Gene Structure 15139 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG196000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGAGGGACATGTTGAAAATGCTAGAAGCTCTCCAGGACATTGAAATTGCTTCCAGATTAGTCGGTTTTGATGCTGATAGTGATGACTCTTTGGATGAGAAGTATAAGAAGCTCCGGTGTTGTATGAATCCACTACTCCACGGTAGTGAAGATTATCGGTTGATTGAAAAGTTTCTTCTTACTACTCATGCCCCTACACATACGGATTGGAGTCTTGAACTTGAAGAAGTTTTTTCACTTGAAAGGGAAGGGGAATTGGATAAATACGCTCCTTGTGATCATCTGAATATTTTTGTACCGGCATCAGATTCGATCCATGCTACTAGGTACAGACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0003950 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006464 GO:0006471 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016070 GO:0016740 GO:0016757 GO:0016763 GO:0016874 GO:0016886 GO:0019538 GO:0022616 GO:0033554 GO:0033993 GO:0034641 GO:0034645 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0071704 GO:0090304 GO:0097305 GO:0140097 GO:1901360 GO:1901564 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 map03410 map04210 map04212 map04214 map04217

Pfam Domains

Protein Families

BRCT PADR1 PARP PARP_reg WGR zf-PARP

Protein Analysis

112

Amino Acids

13.05

Weight (kDa)

4.79

Isoelectric Point (pI)

52.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PARP	PF00644	49 - 94	4.2e-07	Poly(ADP-ribose) polymerase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66290 AT5G66290
fragaria_vesca	FvH4_1g12000 FvH4_2g21980
malus_domestica	MD02G1134200.v1.1 MD15G1247200.v1.1
prunus_persica	Prupe.7G166600_v2.0.a1 Prupe.7G166600_v2.0.a1
pyrus_communis	pycom02g10580
rosa_chinensis	RchiOBHm_Chr0c39g0503221 RchiOBHm_Chr1g0353231 RchiOBHm_Chr2g0099641 RchiOBHm_Chr2g0126361 RchiOBHm_Chr5g0080231
rosa_laevigata	RLG00000008117 RLG00000016900 RLG00000021865
rosa_multiflora	Rmu_sc0000394.1_g000010 Rmu_sc0000543.1_g000026 Rmu_sc0005120.1_g000016 Rmu_sc0006325.1_g000056 Rmu_sc0010438.1_g000001 Rmu_sc0035741.1_g000001 Rmu_ssc0000366.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142880 Rroxscaffold_3G00248750 Rroxscaffold_5G00378640 Rroxscaffold_5G00382790 Rroxscaffold_7G00190790
rosa_rugosa	Rorug02G0081700 Rorug02G0258300 Rorug06G0170500
rosa_samantha	Rh1CG034700 Rh1DG035400 Rh2AG131100 Rh2AG189600 Rh2AG189700 Rh2BG134500 Rh2BG230100 Rh2BG328200 Rh2CG135300 Rh2DG135900 Rh2DG196000 Rh2DG196100 Rh2DG196200 Rh3DG312100 Rh4CG305000 Rh4DG111800 Rh5AG369300 Rh5AG496200 Rh5AG496300 Rh5BG555300 Rh5CG578200 Rh5DG254100 Rh5DG254200 Rh6BG167500 Rh6BG167600 Rh6BG241100 Rh7AG282200 Rh7CG301400 Rh7CG301500 Rh7DG435700 Rh7DG435800
rosa_wichuraiana	Rw0G008970 Rw2G010150 Rw3G024850 Rw4G013560 Rw5G022800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	307
AfaI	GTAC	2 cut(s)	297, 329
AflIII	ACRYGT	1 cut(s)	9
AgsI	TTSAA	6 cut(s)	16, 44, 167, 218, 224, 242
AjnI	CCWGG	1 cut(s)	33
AleI	CACNNNNGTG	1 cut(s)	144
AluBI	AGCT	2 cut(s)	29, 112
AluI	AGCT	2 cut(s)	29, 112
AlwI	GGATC	1 cut(s)	307
Asp700I	GAANNNNTTC	1 cut(s)	171
BcgI	CGANNNNNNTGC	2 cut(s)	291, 325
BciT130I	CCWGG	1 cut(s)	35
BclI	TGATCA	1 cut(s)	277
BfaI	CTAG	2 cut(s)	23, 324
Bme1390I	CCNGG	1 cut(s)	35
BmrFI	CCNGG	1 cut(s)	35
BmsI	GCATC	2 cut(s)	61, 311
BpmI	CTGGAG	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	139
BsaWI	WCCGGW	1 cut(s)	114
Bse118I	RCCGGY	1 cut(s)	298
BseBI	CCWGG	1 cut(s)	35
BseDI	CCNNGG	1 cut(s)	139
BseGI	GGATG	1 cut(s)	100
BsiSI	CCGG	2 cut(s)	115, 299
BslFI	GGGAC	1 cut(s)	20
BsmFI	GGGAC	1 cut(s)	20
Bsp143I	GATC	2 cut(s)	277, 312
BspPI	GGATC	1 cut(s)	307
BsrFI	RCCGGY	1 cut(s)	298
BssAI	RCCGGY	1 cut(s)	298
BssECI	CCNNGG	1 cut(s)	139
BssMI	GATC	2 cut(s)	277, 312
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	1 cut(s)	143
BstDSI	CCRYGG	1 cut(s)	139
BstF5I	GGATG	1 cut(s)	100
BstKTI	GATC	2 cut(s)	280, 315
BstMBI	GATC	2 cut(s)	277, 312
BstNI	CCWGG	1 cut(s)	35
BstNSI	RCATGY	1 cut(s)	13
BstSCI	CCNGG	1 cut(s)	33
BtgI	CCRYGG	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	100
Cfr10I	RCCGGY	1 cut(s)	298
Csp6I	GTAC	2 cut(s)	296, 328
CviAII	CATG	3 cut(s)	10, 188, 317
CviJI	RGCY	2 cut(s)	29, 112
CviKI_1	RGCY	2 cut(s)	29, 112
CviQI	GTAC	2 cut(s)	296, 328
DpnI	GATC	2 cut(s)	279, 314
DpnII	GATC	2 cut(s)	277, 312
EcoRII	CCWGG	1 cut(s)	33
FaeI	CATG	3 cut(s)	13, 191, 320
FaiI	YATR	6 cut(s)	11, 105, 125, 189, 201, 318
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	3 cut(s)	9, 187, 316
FbaI	TGATCA	1 cut(s)	277
FokI	GGATG	1 cut(s)	107
FspBI	CTAG	2 cut(s)	23, 324
GsuI	CTGGAG	1 cut(s)	17
HapII	CCGG	2 cut(s)	115, 299
Hin1II	CATG	3 cut(s)	13, 191, 320
HinfI	GANTC	4 cut(s)	86, 127, 211, 308
HpaII	CCGG	2 cut(s)	115, 299
Hpy188I	TCNGA	2 cut(s)	285, 307
Hpy188III	TCNNGA	2 cut(s)	54, 215
HpyAV	CCTTC	1 cut(s)	242
HpyCH4III	ACNGT	1 cut(s)	143
Hsp92II	CATG	3 cut(s)	13, 191, 320
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	2 cut(s)	277, 312
LmnI	GCTCC	2 cut(s)	117, 274
LpnPI	CCDG	5 cut(s)	20, 47, 67, 128, 312
LweI	GCATC	2 cut(s)	61, 311
MaeI	CTAG	2 cut(s)	23, 324
MalI	GATC	2 cut(s)	279, 314
MboI	GATC	2 cut(s)	277, 312
MboII	GAAGA	3 cut(s)	161, 167, 236
MluCI	AATT	2 cut(s)	45, 254
MlyI	GAGTC	2 cut(s)	80, 220
MroXI	GAANNNNTTC	1 cut(s)	171
MslI	CAYNNNNRTG	1 cut(s)	144
MspI	CCGG	2 cut(s)	115, 299
MspR9I	CCNGG	1 cut(s)	35
MvaI	CCWGG	1 cut(s)	35
NdeII	GATC	2 cut(s)	277, 312
NlaIII	CATG	3 cut(s)	13, 191, 320
NspI	RCATGY	1 cut(s)	13
OliI	CACNNNNGTG	1 cut(s)	144
PciI	ACATGT	1 cut(s)	9
PdmI	GAANNNNTTC	1 cut(s)	171
PfeI	GAWTC	2 cut(s)	127, 308
PfoI	TCCNGGA	1 cut(s)	33
PleI	GAGTC	2 cut(s)	80, 219
PpsI	GAGTC	2 cut(s)	80, 219
PscI	ACATGT	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
RsaI	GTAC	2 cut(s)	297, 329
RsaNI	GTAC	2 cut(s)	296, 328
RseI	CAYNNNNRTG	1 cut(s)	144
Sau3AI	GATC	2 cut(s)	277, 312
SchI	GAGTC	2 cut(s)	80, 220
ScrFI	CCNGG	1 cut(s)	35
SetI	ASST	3 cut(s)	31, 114, 329
SfaNI	GCATC	2 cut(s)	61, 311
SmiMI	CAYNNNNRTG	1 cut(s)	144
Sse9I	AATT	2 cut(s)	45, 254
SspI	AATATT	1 cut(s)	289
SspMI	CTAG	2 cut(s)	23, 324
StyD4I	CCNGG	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	143
TaqI	TCGA	1 cut(s)	311
TasI	AATT	2 cut(s)	45, 254
TfiI	GAWTC	2 cut(s)	127, 308
TspDTI	ATGAA	1 cut(s)	140
TspGWI	ACGGA	1 cut(s)	218
XceI	RCATGY	1 cut(s)	13
XmnI	GAANNNNTTC	1 cut(s)	171
XspI	CTAG	2 cut(s)	23, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.