Rh2AG131100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000811
Physical Location & Seq
Reverse (-)
11861196 .. 11867386
6191 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG131100.1

Sequence Viewer

Length: 675 bp
ATGGGTGCCACAGAATCCTCACTCTCGAGCTCACAGAGGCGGCCGGGCGATGAAATCACGACCGTGTCTGAGCGATCGGAGGTGGCCGATCCTATATTAGAGAGGCTCAGGTCCCTAAGAATTTCGACGCCATTACTGACTTCACCCCCAAGTGAGGGTAGCTTGACTGACATTTTAGTGAGGAAACCTTCGTCTTCTTCAGCTCCCAGTATTGTCGATCCGAAAGTGTTACTGGAACTCTTCTCGATGTACCGTGAGTGGCAGGAGGAGAATGTCAAAAAGCTGAGCCAAAAACAGGAAGAGATAGAGAACAAGATAGAAATTGCGGACGCGTTGTCTGTTAAACTTAAGCAACGCTTTAATTATTCAGTGACAGCAATGAAGACATCCTCGCAACATTTATGTGGAGTTCATGCACTGCAGGTAGAGATTGGGGAACTTAAAGGAAGGTTGACGGAGGTTATTAGCAACTGTGATGCAGTGTGCAAGAGAATATCCGCAGAAGGACCAGAGTCTCTTCGGTCATCTGTCAAGCCTTTGGTTATCTGCACCGCACACCAAGAATACCAATCTGCCTCGTCTGATCTACAAAGAGATCCGACCCCAAGTCTACCTTCTACAGAAACCAAGGCGATGTATCGATCTACTGCTCGACGAAGAAACTCGTATGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

24.82

Weight (kDa)

7.66

Isoelectric Point (pI)

76.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 412
AccB1I GGYRCC 1 cut(s) 5
AccI GTMKAC 1 cut(s) 610
AccII CGCG 1 cut(s) 332
AciI CCGC 4 cut(s) 40, 326, 498, 552
AclWI GGATC 3 cut(s) 83, 212, 590
AcoI YGGCCR 2 cut(s) 41, 84
AcsI RAATTY 1 cut(s) 120
AcuI CTGAAG 1 cut(s) 183
AcyI GRCGYC 1 cut(s) 128
AfaI GTAC 1 cut(s) 251
AfiI CCNNNNNNNGG 3 cut(s) 154, 155, 295
AflII CTTAAG 1 cut(s) 347
AflIII ACRYGT 1 cut(s) 330
AhdI GACNNNNNGTC 2 cut(s) 334, 606
AjuI GAANNNNNNNTTGG 2 cut(s) 598, 630
AleI CACNNNNGTG 1 cut(s) 62
AluBI AGCT 4 cut(s) 30, 162, 203, 283
AluI AGCT 4 cut(s) 30, 162, 203, 283
Alw21I GWGCWC 1 cut(s) 32
Alw26I GTCTC 1 cut(s) 519
AlwI GGATC 3 cut(s) 83, 212, 590
Ama87I CYCGRG 1 cut(s) 25
AoxI GGCC 2 cut(s) 41, 84
ApoI RAATTY 1 cut(s) 120
AspS9I GGNCC 2 cut(s) 111, 506
AsuC2I CCSGG 1 cut(s) 45
AsuHPI GGTGA 1 cut(s) 135
AvaI CYCGRG 1 cut(s) 25
AvaII GGWCC 2 cut(s) 111, 506
BanI GGYRCC 1 cut(s) 5
BanII GRGCYC 1 cut(s) 32
BbsI GAAGAC 2 cut(s) 186, 389
Bbv12I GWGCWC 1 cut(s) 32
BcnI CCSGG 1 cut(s) 45
BcoDI GTCTC 1 cut(s) 519
BfmI CTRYAG 2 cut(s) 419, 618
BfrI CTTAAG 1 cut(s) 347
BfuAI ACCTGC 1 cut(s) 412
BisI GCNGC 1 cut(s) 41
BlpI GCTNAGC 1 cut(s) 284
BlsI GCNGC 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 45
Bme18I GGWCC 2 cut(s) 111, 506
BmeRI GACNNNNNGTC 2 cut(s) 334, 606
BmeT110I CYCGRG 1 cut(s) 25
BmgT120I GGNCC 2 cut(s) 111, 506
BmiI GGNNCC 2 cut(s) 7, 113
BmrFI CCNGG 1 cut(s) 45
BmrI ACTGGG 1 cut(s) 201
BmsI GCATC 1 cut(s) 466
BmuI ACTGGG 1 cut(s) 201
BoxI GACNNNNGTC 1 cut(s) 511
BpiI GAAGAC 2 cut(s) 186, 389
Bpu10I CCTNAGC 1 cut(s) 107
Bpu1102I GCTNAGC 1 cut(s) 284
BpuMI CCSGG 1 cut(s) 45
Bsa29I ATCGAT 1 cut(s) 640
BsaHI GRCGYC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 627
Bsc4I CCNNNNNNNGG 3 cut(s) 154, 155, 295
Bse1I ACTGG 2 cut(s) 207, 237
Bse3DI GCAATG 1 cut(s) 384
BseCI ATCGAT 1 cut(s) 640
BseDI CCNNGG 1 cut(s) 627
BseGI GGATG 1 cut(s) 386
BseLI CCNNNNNNNGG 3 cut(s) 154, 155, 295
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 3 cut(s) 60, 121, 275
BseNI ACTGG 2 cut(s) 207, 237
BseRI GAGGAG 1 cut(s) 281
BseX3I CGGCCG 1 cut(s) 41
BsgI GTGCAG 1 cut(s) 532
Bsh1236I CGCG 1 cut(s) 332
Bsh1285I CGRYCG 3 cut(s) 44, 63, 77
BshFI GGCC 2 cut(s) 43, 86
BshNI GGYRCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 640
BsiEI CGRYCG 3 cut(s) 44, 63, 77
BsiHKAI GWGCWC 1 cut(s) 32
BsiHKCI CYCGRG 1 cut(s) 25
BsiSI CCGG 1 cut(s) 44
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 3 cut(s) 154, 155, 295
BsmAI GTCTC 1 cut(s) 519
BsmFI GGGAC 1 cut(s) 97
BsnI GGCC 2 cut(s) 43, 86
BsoBI CYCGRG 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 32
Bsp143I GATC 6 cut(s) 74, 88, 217, 583, 595, 641
Bsp1720I GCTNAGC 1 cut(s) 284
BspACI CCGC 4 cut(s) 40, 326, 498, 552
BspANI GGCC 2 cut(s) 43, 86
BspCNI CTCAG 3 cut(s) 61, 120, 276
BspDI ATCGAT 1 cut(s) 640
BspFNI CGCG 1 cut(s) 332
BspLI GGNNCC 2 cut(s) 7, 113
BspMAI CTGCAG 1 cut(s) 423
BspMI ACCTGC 1 cut(s) 412
BspPI GGATC 3 cut(s) 83, 212, 590
BspT107I GGYRCC 1 cut(s) 5
BspTI CTTAAG 1 cut(s) 347
BsrDI GCAATG 1 cut(s) 384
BsrI ACTGG 2 cut(s) 207, 237
BssECI CCNNGG 1 cut(s) 627
BssMI GATC 6 cut(s) 74, 88, 217, 583, 595, 641
BssNI GRCGYC 1 cut(s) 128
BssT1I CCWWGG 1 cut(s) 627
Bst4CI ACNGT 3 cut(s) 64, 254, 473
Bst6I CTCTTC 3 cut(s) 245, 294, 522
BstACI GRCGYC 1 cut(s) 128
BstAFI CTTAAG 1 cut(s) 347
BstDEI CTNAG 4 cut(s) 69, 107, 116, 284
BstF5I GGATG 1 cut(s) 386
BstFNI CGCG 1 cut(s) 332
BstKTI GATC 6 cut(s) 77, 91, 220, 586, 598, 644
BstMAI GTCTC 1 cut(s) 519
BstMBI GATC 6 cut(s) 74, 88, 217, 583, 595, 641
BstMCI CGRYCG 3 cut(s) 44, 63, 77
BstPAI GACNNNNGTC 1 cut(s) 511
BstSCI CCNGG 1 cut(s) 43
BstSFI CTRYAG 2 cut(s) 419, 618
BstUI CGCG 1 cut(s) 332
BstV2I GAAGAC 2 cut(s) 186, 389
BstX2I RGATCY 1 cut(s) 595
BstYI RGATCY 1 cut(s) 595
BstZI CGGCCG 1 cut(s) 41
Bsu15I ATCGAT 1 cut(s) 640
BsuRI GGCC 2 cut(s) 43, 86
BsuTUI ATCGAT 1 cut(s) 640
BtgZI GCGATG 2 cut(s) 63, 647
BtsCI GGATG 1 cut(s) 386
BtsI GCAGTG 2 cut(s) 416, 486
BtsIMutI CAGTG 3 cut(s) 375, 416, 486
BveI ACCTGC 1 cut(s) 412
Cfr13I GGNCC 2 cut(s) 111, 506
ClaI ATCGAT 1 cut(s) 640
CseI GACGC 2 cut(s) 136, 338
Csp6I GTAC 1 cut(s) 250
CviAII CATG 1 cut(s) 413
CviJI RGCY 9 cut(s) 30, 43, 86, 106, 162, 203, 283, 288, 535
CviKI_1 RGCY 9 cut(s) 30, 43, 86, 106, 162, 203, 283, 288, 535
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 4 cut(s) 69, 107, 116, 284
DpnI GATC 6 cut(s) 76, 90, 219, 585, 597, 643
DpnII GATC 6 cut(s) 74, 88, 217, 583, 595, 641
DriI GACNNNNNGTC 2 cut(s) 334, 606
EaeI YGGCCR 2 cut(s) 41, 84
EagI CGGCCG 1 cut(s) 41
Eam1104I CTCTTC 3 cut(s) 245, 294, 522
Eam1105I GACNNNNNGTC 2 cut(s) 334, 606
EarI CTCTTC 3 cut(s) 245, 294, 522
Ecl136II GAGCTC 1 cut(s) 30
EclXI CGGCCG 1 cut(s) 41
Eco130I CCWWGG 1 cut(s) 627
Eco24I GRGCYC 1 cut(s) 32
Eco47I GGWCC 2 cut(s) 111, 506
Eco52I CGGCCG 1 cut(s) 41
Eco53kI GAGCTC 1 cut(s) 30
Eco57I CTGAAG 1 cut(s) 183
Eco88I CYCGRG 1 cut(s) 25
EcoICRI GAGCTC 1 cut(s) 30
EcoO109I RGGNCCY 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 627
EcoT38I GRGCYC 1 cut(s) 32
ErhI CCWWGG 1 cut(s) 627
FaeI CATG 1 cut(s) 416
FaiI YATR 4 cut(s) 95, 403, 414, 669
FalI AAGNNNNNCTT 4 cut(s) 341, 373, 598, 630
FaqI GGGAC 1 cut(s) 97
FatI CATG 1 cut(s) 412
FblI GTMKAC 1 cut(s) 610
Fnu4HI GCNGC 1 cut(s) 41
FokI GGATG 1 cut(s) 373
FriOI GRGCYC 1 cut(s) 32
Fsp4HI GCNGC 1 cut(s) 41
GluI GCNGC 1 cut(s) 41
HaeIII GGCC 2 cut(s) 43, 86
HapII CCGG 1 cut(s) 44
HgaI GACGC 2 cut(s) 136, 338
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 1 cut(s) 416
HincII GTYRAC 1 cut(s) 453
HindII GTYRAC 1 cut(s) 453
HinfI GANTC 2 cut(s) 14, 512
HpaII CCGG 1 cut(s) 44
HphI GGTGA 1 cut(s) 135
Hpy166II GTNNAC 2 cut(s) 453, 611
Hpy188I TCNGA 5 cut(s) 70, 79, 222, 583, 600
Hpy188III TCNNGA 3 cut(s) 25, 58, 244
Hpy8I GTNNAC 2 cut(s) 453, 611
Hpy99I CGWCG 2 cut(s) 130, 657
HpyAV CCTTC 4 cut(s) 198, 441, 497, 624
HpyCH4III ACNGT 3 cut(s) 64, 254, 473
HpyCH4V TGCA 5 cut(s) 416, 421, 479, 486, 549
HpyF3I CTNAG 4 cut(s) 69, 107, 116, 284
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 1 cut(s) 416
Kzo9I GATC 6 cut(s) 74, 88, 217, 583, 595, 641
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 8 cut(s) 57, 94, 218, 220, 248, 281, 407, 522
LweI GCATC 1 cut(s) 466
MaeIII GTNAC 2 cut(s) 228, 370
MalI GATC 6 cut(s) 76, 90, 219, 585, 597, 643
MboI GATC 6 cut(s) 74, 88, 217, 583, 595, 641
MboII GAAGA 7 cut(s) 186, 189, 232, 311, 394, 509, 669
MflI RGATCY 1 cut(s) 595
MhlI GDGCHC 1 cut(s) 32
MluCI AATT 3 cut(s) 120, 321, 361
MluI ACGCGT 1 cut(s) 330
MlyI GAGTC 1 cut(s) 521
MmeI TCCRAC 1 cut(s) 623
MseI TTAA 4 cut(s) 342, 348, 360, 441
MslI CAYNNNNRTG 3 cut(s) 62, 176, 402
MspCI CTTAAG 1 cut(s) 347
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 1 cut(s) 45
MvnI CGCG 1 cut(s) 332
NciI CCSGG 1 cut(s) 45
NdeII GATC 6 cut(s) 74, 88, 217, 583, 595, 641
NlaIII CATG 1 cut(s) 416
NlaIV GGNNCC 2 cut(s) 7, 113
NmuCI GTSAC 1 cut(s) 370
OliI CACNNNNGTG 1 cut(s) 62
PaeR7I CTCGAG 1 cut(s) 25
PfeI GAWTC 1 cut(s) 14
PflFI GACNNNGTC 1 cut(s) 64
PkrI GCNGC 1 cut(s) 42
Ple19I CGATCG 1 cut(s) 77
PleI GAGTC 1 cut(s) 520
PpsI GAGTC 1 cut(s) 520
PpuMI RGGWCCY 1 cut(s) 111
PshAI GACNNNNGTC 1 cut(s) 511
Psp124BI GAGCTC 1 cut(s) 32
Psp5II RGGWCCY 1 cut(s) 111
PspN4I GGNNCC 2 cut(s) 7, 113
PspPI GGNCC 2 cut(s) 111, 506
PspPPI RGGWCCY 1 cut(s) 111
PstI CTGCAG 1 cut(s) 423
PsuI RGATCY 1 cut(s) 595
PsyI GACNNNGTC 1 cut(s) 64
PvuI CGATCG 1 cut(s) 77
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
RseI CAYNNNNRTG 3 cut(s) 62, 176, 402
SacI GAGCTC 1 cut(s) 32
SaqAI TTAA 4 cut(s) 342, 348, 360, 441
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 6 cut(s) 74, 88, 217, 583, 595, 641
Sau96I GGNCC 2 cut(s) 111, 506
SchI GAGTC 1 cut(s) 521
ScrFI CCNGG 1 cut(s) 45
SduI GDGCHC 1 cut(s) 32
SfaNI GCATC 1 cut(s) 466
SfcI CTRYAG 2 cut(s) 419, 618
Sfr274I CTCGAG 1 cut(s) 25
SinI GGWCC 2 cut(s) 111, 506
SlaI CTCGAG 1 cut(s) 25
SmiMI CAYNNNNRTG 3 cut(s) 62, 176, 402
SmlI CTYRAG 2 cut(s) 25, 347
SmoI CTYRAG 2 cut(s) 25, 347
Sse9I AATT 3 cut(s) 120, 321, 361
SsiI CCGC 4 cut(s) 40, 326, 498, 552
SstI GAGCTC 1 cut(s) 32
StyD4I CCNGG 1 cut(s) 43
StyI CCWWGG 1 cut(s) 627
TaaI ACNGT 3 cut(s) 64, 254, 473
TaqI TCGA 6 cut(s) 26, 125, 216, 245, 640, 652
TaqII GACCGA 1 cut(s) 510
TasI AATT 3 cut(s) 120, 321, 361
TauI GCSGC 1 cut(s) 43
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 4 cut(s) 342, 348, 360, 441
Tru9I TTAA 4 cut(s) 342, 348, 360, 441
TscAI CASTG 3 cut(s) 375, 423, 486
TseFI GTSAC 1 cut(s) 370
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 3 cut(s) 66, 395, 401
TspGWI ACGGA 1 cut(s) 470
TspRI CASTG 3 cut(s) 375, 423, 486
Tth111I GACNNNGTC 1 cut(s) 64
Vha464I CTTAAG 1 cut(s) 347
VpaK11BI GGWCC 2 cut(s) 111, 506
XapI RAATTY 1 cut(s) 120
XhoI CTCGAG 1 cut(s) 25
XmiI GTMKAC 1 cut(s) 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.