Rw5G022800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000811
Physical Location & Seq
Forward (+)
31782944 .. 31783750
807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G022800.1

Sequence Viewer

Length: 195 bp
ATGTTGCAGCACTTTAATTTATTATTTAAGATTATTGGAAGGGTAGAGATTGGGGAACTTAAAGGAAGGTTGACGGAGGTTATTAGCAACTGTGATGCAATGTGCAAGAGAATATCCGCAGAAGGACCAGAGTCTCTTCGGTCATCTGTCAAGCCATTAGTTATCTGCACCGCACATCAAGAACACCAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

7.16

Weight (kDa)

7.78

Isoelectric Point (pI)

48.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 117, 171
Alw26I GTCTC 1 cut(s) 138
ApeKI GCWGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 125
AvaII GGWCC 1 cut(s) 125
BbvI GCAGC 1 cut(s) 19
BcoDI GTCTC 1 cut(s) 138
BisI GCNGC 1 cut(s) 8
BlsI GCNGC 1 cut(s) 9
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 125
BmsI GCATC 1 cut(s) 85
BoxI GACNNNNGTC 1 cut(s) 130
Bse3DI GCAATG 1 cut(s) 105
BseMI GCAATG 1 cut(s) 105
BseXI GCAGC 1 cut(s) 19
BsgI GTGCAG 1 cut(s) 151
BsmAI GTCTC 1 cut(s) 138
BspACI CCGC 2 cut(s) 117, 171
BsrDI GCAATG 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 92
Bst6I CTCTTC 1 cut(s) 141
BstMAI GTCTC 1 cut(s) 138
BstPAI GACNNNNGTC 1 cut(s) 130
BstV1I GCAGC 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 125
CviJI RGCY 1 cut(s) 154
CviKI_1 RGCY 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 125
Fnu4HI GCNGC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 8
GluI GCNGC 1 cut(s) 8
HincII GTYRAC 1 cut(s) 72
HindII GTYRAC 1 cut(s) 72
HinfI GANTC 1 cut(s) 131
Hpy166II GTNNAC 1 cut(s) 72
Hpy188III TCNNGA 2 cut(s) 179, 192
Hpy8I GTNNAC 1 cut(s) 72
HpyAV CCTTC 3 cut(s) 33, 60, 116
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4V TGCA 4 cut(s) 7, 98, 105, 168
LpnPI CCDG 1 cut(s) 141
Lsp1109I GCAGC 1 cut(s) 19
LweI GCATC 1 cut(s) 85
MboII GAAGA 1 cut(s) 128
MluCI AATT 1 cut(s) 16
MlyI GAGTC 1 cut(s) 140
MnlI CCTC 1 cut(s) 70
MseI TTAA 3 cut(s) 15, 27, 60
PkrI GCNGC 1 cut(s) 9
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
PshAI GACNNNNGTC 1 cut(s) 130
PspPI GGNCC 1 cut(s) 125
SaqAI TTAA 3 cut(s) 15, 27, 60
SatI GCNGC 1 cut(s) 8
Sau96I GGNCC 1 cut(s) 125
SchI GAGTC 1 cut(s) 140
SetI ASST 2 cut(s) 71, 81
SfaNI GCATC 1 cut(s) 85
SgeI CNNG 4 cut(s) 118, 140, 163, 191
SinI GGWCC 1 cut(s) 125
Sse9I AATT 1 cut(s) 16
SsiI CCGC 2 cut(s) 117, 171
TaaI ACNGT 1 cut(s) 92
TaqII GACCGA 1 cut(s) 129
TasI AATT 1 cut(s) 16
Tru1I TTAA 3 cut(s) 15, 27, 60
Tru9I TTAA 3 cut(s) 15, 27, 60
TseI GCWGC 1 cut(s) 7
TspGWI ACGGA 1 cut(s) 89
VpaK11BI GGWCC 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.