Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000811

Physical Location & Seq

Genomic Coordinates Forward (+)

56631422 .. 56634149

Gene Structure 2728 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG305000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGGTAATACTCGAGCCATTGGTGCGTTTCTGGTGCTTGTGTTAGTCCAGTTCTTTGTTATTGCAGCAGAGGCAAACACTCAGGAATATGGTTATATGCAGATTCTTATGGATGAGTGGAATATAAAACCTCCTAGTTGGGTGAGTGCCGATCCTTGTGACGGCTGGGAAGGATATTACCGGAAAAATCTTAAAAACAGAATGCTGCTTTGGCATGGTTCTCAGTTTACGAACTTTGTGGGAATACTTAGCCAAGGACTAAGAATAGCTCCTCCTGAAGCTCCAGCTACTGGTTATGTAGCTGGTTATATGTTTCATCATTTTGCCTTGCAGTTTGGCAAGGGGATTTACTTTGCTGACCCTGCCACATATATGGATAAACCTCCTAAGGGAAAGCACTCTACGAAGGGACTTGGCAAGAAAAAACCTGAGTCGGACTATGTTAAATGGAGACATGATGCCACTGTGCCCTGGGAAAACCAGTGGATTCACATCTCAAGTATTGTGGATCCGAAAATGTTACTGGAACTCTTCTCGATGTACCGTGAGTGGCAGGAGGAGAATGTCAAAAAGCTGAGCCAAAAACAGAGATCCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0003950 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006464 GO:0006471 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016070 GO:0016740 GO:0016757 GO:0016763 GO:0016874 GO:0016886 GO:0019538 GO:0022616 GO:0033554 GO:0033993 GO:0034641 GO:0034645 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0071704 GO:0090304 GO:0097305 GO:0140097 GO:1901360 GO:1901564 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 map03410 map04210 map04212 map04214 map04217

Pfam Domains

Protein Families

BRCT PADR1 PARP PARP_reg WGR zf-PARP

Protein Analysis

199

Amino Acids

22.98

Weight (kDa)

9.03

Isoelectric Point (pI)

35.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PARP	PF00644	59 - 123	1.6e-19	Poly(ADP-ribose) polymerase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66290 AT5G66290
fragaria_vesca	FvH4_1g12000 FvH4_2g21980
malus_domestica	MD02G1134200.v1.1 MD15G1247200.v1.1
prunus_persica	Prupe.7G166600_v2.0.a1 Prupe.7G166600_v2.0.a1
pyrus_communis	pycom02g10580
rosa_chinensis	RchiOBHm_Chr0c39g0503221 RchiOBHm_Chr1g0353231 RchiOBHm_Chr2g0099641 RchiOBHm_Chr2g0126361 RchiOBHm_Chr5g0080231
rosa_laevigata	RLG00000008117 RLG00000016900 RLG00000021865
rosa_multiflora	Rmu_sc0000394.1_g000010 Rmu_sc0000543.1_g000026 Rmu_sc0005120.1_g000016 Rmu_sc0006325.1_g000056 Rmu_sc0010438.1_g000001 Rmu_sc0035741.1_g000001 Rmu_ssc0000366.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142880 Rroxscaffold_3G00248750 Rroxscaffold_5G00378640 Rroxscaffold_5G00382790 Rroxscaffold_7G00190790
rosa_rugosa	Rorug02G0081700 Rorug02G0258300 Rorug06G0170500
rosa_samantha	Rh1CG034700 Rh1DG035400 Rh2AG131100 Rh2AG189600 Rh2AG189700 Rh2BG134500 Rh2BG230100 Rh2BG328200 Rh2CG135300 Rh2DG135900 Rh2DG196000 Rh2DG196100 Rh2DG196200 Rh3DG312100 Rh4CG305000 Rh4DG111800 Rh5AG369300 Rh5AG496200 Rh5AG496300 Rh5BG555300 Rh5CG578200 Rh5DG254100 Rh5DG254200 Rh6BG167500 Rh6BG167600 Rh6BG241100 Rh7AG282200 Rh7CG301400 Rh7CG301500 Rh7DG435700 Rh7DG435800
rosa_wichuraiana	Rw0G008970 Rw2G010150 Rw3G024850 Rw4G013560 Rw5G022800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	290
AclWI	GGATC	4 cut(s)	146, 503, 516, 585
AcuI	CTGAAG	1 cut(s)	297
AfaI	GTAC	1 cut(s)	542
AfiI	CCNNNNNNNGG	3 cut(s)	161, 290, 389
AjnI	CCWGG	1 cut(s)	470
AjuI	GAANNNNNNNTTGG	2 cut(s)	193, 225
AluBI	AGCT	5 cut(s)	269, 281, 287, 302, 574
AluI	AGCT	5 cut(s)	269, 281, 287, 302, 574
Alw26I	GTCTC	1 cut(s)	445
AlwI	GGATC	4 cut(s)	146, 503, 516, 585
AlwNI	CAGNNNCTG	1 cut(s)	290
Ama87I	CYCGRG	1 cut(s)	12
ApeKI	GCWGC	2 cut(s)	65, 205
AsuHPI	GGTGA	1 cut(s)	154
AvaI	CYCGRG	1 cut(s)	12
AxyI	CCTNAGG	1 cut(s)	387
BaeGI	GKGCMC	1 cut(s)	471
BamHI	GGATCC	1 cut(s)	508
BbvI	GCAGC	2 cut(s)	77, 192
BceAI	ACGGC	1 cut(s)	178
BciT130I	CCWGG	1 cut(s)	472
BcoDI	GTCTC	1 cut(s)	445
BfaI	CTAG	1 cut(s)	135
BisI	GCNGC	2 cut(s)	66, 206
BlpI	GCTNAGC	1 cut(s)	575
BlsI	GCNGC	2 cut(s)	67, 207
Bme1390I	CCNGG	1 cut(s)	472
BmeT110I	CYCGRG	1 cut(s)	12
BmiI	GGNNCC	1 cut(s)	510
BmrFI	CCNGG	1 cut(s)	472
BmsI	GCATC	1 cut(s)	448
BpmI	CTGGAG	1 cut(s)	267
Bpu1102I	GCTNAGC	1 cut(s)	575
BpuEI	CTTGAG	1 cut(s)	481
BsaBI	GATNNNNATC	1 cut(s)	491
BsaJI	CCNNGG	3 cut(s)	253, 470, 471
BsaWI	WCCGGW	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	3 cut(s)	161, 290, 389
Bse1I	ACTGG	4 cut(s)	49, 295, 481, 528
Bse21I	CCTNAGG	1 cut(s)	387
Bse8I	GATNNNNATC	1 cut(s)	491
BseBI	CCWGG	1 cut(s)	472
BseDI	CCNNGG	3 cut(s)	253, 470, 471
BseGI	GGATG	1 cut(s)	118
BseJI	GATNNNNATC	1 cut(s)	491
BseLI	CCNNNNNNNGG	3 cut(s)	161, 290, 389
BseMII	CTCAG	4 cut(s)	95, 236, 420, 566
BseNI	ACTGG	4 cut(s)	49, 295, 481, 528
BseRI	GAGGAG	2 cut(s)	261, 572
BseSI	GKGCMC	1 cut(s)	471
BseXI	GCAGC	2 cut(s)	77, 192
BseYI	CCCAGC	1 cut(s)	165
BsiHKCI	CYCGRG	1 cut(s)	12
BsiSI	CCGG	1 cut(s)	181
BslFI	GGGAC	1 cut(s)	423
BslI	CCNNNNNNNGG	3 cut(s)	161, 290, 389
BsmAI	GTCTC	1 cut(s)	445
BsmFI	GGGAC	1 cut(s)	423
BsmI	GAATGC	1 cut(s)	207
BsoBI	CYCGRG	1 cut(s)	12
Bsp1286I	GDGCHC	1 cut(s)	471
Bsp143I	GATC	3 cut(s)	151, 508, 590
Bsp1720I	GCTNAGC	1 cut(s)	575
BspCNI	CTCAG	4 cut(s)	94, 235, 421, 567
BspLI	GGNNCC	1 cut(s)	510
BspPI	GGATC	4 cut(s)	146, 503, 516, 585
BsrI	ACTGG	4 cut(s)	49, 295, 481, 528
BssECI	CCNNGG	3 cut(s)	253, 470, 471
BssMI	GATC	3 cut(s)	151, 508, 590
BssT1I	CCWWGG	1 cut(s)	253
Bst2UI	CCWGG	1 cut(s)	472
Bst4CI	ACNGT	2 cut(s)	466, 545
Bst6I	CTCTTC	1 cut(s)	536
BstDEI	CTNAG	7 cut(s)	81, 222, 248, 260, 387, 429, 575
BstF5I	GGATG	1 cut(s)	118
BstKTI	GATC	3 cut(s)	154, 511, 593
BstMAI	GTCTC	1 cut(s)	445
BstMBI	GATC	3 cut(s)	151, 508, 590
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 71, 211, 362
BstNI	CCWGG	1 cut(s)	472
BstSCI	CCNGG	1 cut(s)	470
BstSLI	GKGCMC	1 cut(s)	471
BstV1I	GCAGC	2 cut(s)	77, 192
BstX2I	RGATCY	2 cut(s)	508, 590
BstXI	CCANNNNNNTGG	1 cut(s)	373
BstYI	RGATCY	2 cut(s)	508, 590
Bsu36I	CCTNAGG	1 cut(s)	387
BtsCI	GGATG	1 cut(s)	118
BtsIMutI	CAGTG	2 cut(s)	462, 488
CaiI	CAGNNNCTG	1 cut(s)	290
Csp6I	GTAC	1 cut(s)	541
CspCI	CAANNNNNGTGG	2 cut(s)	486, 521
CviAII	CATG	2 cut(s)	215, 455
CviJI	RGCY	9 cut(s)	17, 165, 252, 269, 281, 287, 302, 574, 579
CviKI_1	RGCY	9 cut(s)	17, 165, 252, 269, 281, 287, 302, 574, 579
CviQI	GTAC	1 cut(s)	541
DdeI	CTNAG	7 cut(s)	81, 222, 248, 260, 387, 429, 575
DpnI	GATC	3 cut(s)	153, 510, 592
DpnII	GATC	3 cut(s)	151, 508, 590
Eam1104I	CTCTTC	1 cut(s)	536
EarI	CTCTTC	1 cut(s)	536
Eco130I	CCWWGG	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	297
Eco81I	CCTNAGG	1 cut(s)	387
Eco88I	CYCGRG	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	470
EcoT14I	CCWWGG	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	2 cut(s)	218, 458
FaqI	GGGAC	1 cut(s)	423
FatI	CATG	2 cut(s)	214, 454
Fnu4HI	GCNGC	2 cut(s)	66, 206
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	2 cut(s)	66, 206
FspBI	CTAG	1 cut(s)	135
GluI	GCNGC	2 cut(s)	66, 206
GsaI	CCCAGC	1 cut(s)	169
GsuI	CTGGAG	1 cut(s)	267
HapII	CCGG	1 cut(s)	181
Hin1II	CATG	2 cut(s)	218, 458
HinfI	GANTC	3 cut(s)	103, 431, 487
HpaII	CCGG	1 cut(s)	181
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	2 cut(s)	436, 513
Hpy188III	TCNNGA	3 cut(s)	83, 275, 535
Hpy8I	GTNNAC	1 cut(s)	228
HpyAV	CCTTC	2 cut(s)	164, 400
HpyCH4III	ACNGT	2 cut(s)	466, 545
HpyCH4V	TGCA	3 cut(s)	65, 100, 331
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 71, 211, 362
HpyF3I	CTNAG	7 cut(s)	81, 222, 248, 260, 387, 429, 575
Hsp92II	CATG	2 cut(s)	218, 458
Kzo9I	GATC	3 cut(s)	151, 508, 590
LmnI	GCTCC	2 cut(s)	274, 286
Lsp1109I	GCAGC	2 cut(s)	77, 192
LweI	GCATC	1 cut(s)	448
MaeI	CTAG	1 cut(s)	135
MaeIII	GTNAC	2 cut(s)	158, 519
MalI	GATC	3 cut(s)	153, 510, 592
MboI	GATC	3 cut(s)	151, 508, 590
MboII	GAAGA	1 cut(s)	523
MflI	RGATCY	2 cut(s)	508, 590
MhlI	GDGCHC	1 cut(s)	471
MlyI	GAGTC	1 cut(s)	440
MmeI	TCCRAC	1 cut(s)	414
MnlI	CCTC	5 cut(s)	64, 141, 282, 393, 550
MseI	TTAA	2 cut(s)	192, 444
MslI	CAYNNNNRTG	1 cut(s)	371
MspI	CCGG	1 cut(s)	181
MspR9I	CCNGG	1 cut(s)	472
Mva1269I	GAATGC	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	472
MwoI	GCNNNNNNNGC	4 cut(s)	23, 71, 211, 362
NdeII	GATC	3 cut(s)	151, 508, 590
NlaIII	CATG	2 cut(s)	218, 458
NlaIV	GGNNCC	1 cut(s)	510
NmuCI	GTSAC	1 cut(s)	158
PaeR7I	CTCGAG	1 cut(s)	12
PasI	CCCWGGG	1 cut(s)	471
PctI	GAATGC	1 cut(s)	207
PfeI	GAWTC	2 cut(s)	103, 487
PflMI	CCANNNNNTGG	1 cut(s)	290
PkrI	GCNGC	2 cut(s)	67, 207
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
Psp6I	CCWGG	1 cut(s)	470
PspFI	CCCAGC	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	470
PspN4I	GGNNCC	1 cut(s)	510
PspXI	VCTCGAGB	1 cut(s)	12
PstNI	CAGNNNCTG	1 cut(s)	290
PsuI	RGATCY	2 cut(s)	508, 590
RsaI	GTAC	1 cut(s)	542
RsaNI	GTAC	1 cut(s)	541
RseI	CAYNNNNRTG	1 cut(s)	371
SaqAI	TTAA	2 cut(s)	192, 444
SatI	GCNGC	2 cut(s)	66, 206
Sau3AI	GATC	3 cut(s)	151, 508, 590
SchI	GAGTC	1 cut(s)	440
ScrFI	CCNGG	1 cut(s)	472
SduI	GDGCHC	1 cut(s)	471
SetI	ASST	8 cut(s)	133, 271, 283, 289, 304, 385, 430, 576
SfaNI	GCATC	1 cut(s)	448
Sfr274I	CTCGAG	1 cut(s)	12
SlaI	CTCGAG	1 cut(s)	12
SmiMI	CAYNNNNRTG	1 cut(s)	371
SmlI	CTYRAG	2 cut(s)	12, 496
SmoI	CTYRAG	2 cut(s)	12, 496
SspMI	CTAG	1 cut(s)	135
StyD4I	CCNGG	1 cut(s)	470
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	2 cut(s)	466, 545
TaqI	TCGA	2 cut(s)	13, 536
TfiI	GAWTC	2 cut(s)	103, 487
Tru1I	TTAA	2 cut(s)	192, 444
Tru9I	TTAA	2 cut(s)	192, 444
TscAI	CASTG	2 cut(s)	469, 488
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	2 cut(s)	65, 205
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	1 cut(s)	305
TspRI	CASTG	2 cut(s)	469, 488
Van91I	CCANNNNNTGG	1 cut(s)	290
XhoI	CTCGAG	1 cut(s)	12
XspI	CTAG	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.