Prupe.7G166600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000811
Physical Location & Seq
Forward (+)
17032076 .. 17035102
3027 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G166600.1

Sequence Viewer

Length: 636 bp
ATGGGTGCCTCAGAATCCACACTCTCAAGCTCACAGAGGCCAGCCGATGAAATCACGACCGTGTCTGAGCGGTCAGAAGTCTCTGATCCCGTCTTAGAAAAGCTCAAATCCCTCAAAATTTCGACGCCGATACTGACTTCACCCCCGGCTGAGGGTAGCTTGACTGACATTTTAGTGAGGAAACCTTCGTCGTCTTCTGTTTCAAGTATTGTGAACCCAAAAGTGCTATTGGAACTCTTCTCTATGTACCGTGATTGGCAGGAAGAGAAGGTGCAAAAGATGAGCAAAAGACAGGAAGACATAGAAGATAAGATAGAAGTAGCTGATGCTTTGGCTGTTAAACTTCTTCAACGTTTTAATTATTCAGTGTCAGCAATGAAGACGTCTTCGCAACATTTATCTGAAGTTCATGCATTGCAGGTGGAGATTGGGGAGCTTAAAGGAAGACTGACAGAGGTAATTAGTAACTGTGATGCACTGTGCCGGAGAATATCGGTGGAAGGACCAGAATCCCTTAGGTCATCTGTCAAGCCATTTGCAGTCGGCACTGCCGACCAAGAATTTCAATCAAGCTCATCTGATCTGCAAAGAGATCTAAACGGAAGTCTACCTTCTGCCGAAACCAAGTTAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

23.13

Weight (kDa)

5.06

Isoelectric Point (pI)

64.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 409
AatII GACGTC 1 cut(s) 386
Acc36I ACCTGC 1 cut(s) 409
AccB1I GGYRCC 1 cut(s) 5
AccBSI CCGCTC 1 cut(s) 70
AccI GTMKAC 1 cut(s) 607
AciI CCGC 1 cut(s) 70
AclI AACGTT 1 cut(s) 352
AclWI GGATC 1 cut(s) 80
AcsI RAATTY 2 cut(s) 117, 560
AcuI CTGAAG 1 cut(s) 423
AcyI GRCGYC 2 cut(s) 125, 383
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 2 cut(s) 151, 152
AgsI TTSAA 3 cut(s) 204, 350, 566
AleI CACNNNNGTG 1 cut(s) 59
AluBI AGCT 6 cut(s) 30, 103, 159, 323, 436, 573
AluI AGCT 6 cut(s) 30, 103, 159, 323, 436, 573
Alw26I GTCTC 1 cut(s) 85
AlwI GGATC 1 cut(s) 80
AoxI GGCC 1 cut(s) 38
ApoI RAATTY 2 cut(s) 117, 560
AspS9I GGNCC 1 cut(s) 503
AsuC2I CCSGG 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 132
AvaII GGWCC 1 cut(s) 503
AxyI CCTNAGG 1 cut(s) 515
BanI GGYRCC 1 cut(s) 5
BbsI GAAGAC 5 cut(s) 186, 303, 378, 386, 451
BbvCI CCTCAGC 1 cut(s) 150
BcnI CCSGG 1 cut(s) 146
BcoDI GTCTC 1 cut(s) 85
BfuAI ACCTGC 1 cut(s) 409
BglII AGATCT 1 cut(s) 592
Bme1390I CCNGG 1 cut(s) 146
Bme18I GGWCC 1 cut(s) 503
BmgT120I GGNCC 1 cut(s) 503
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 1 cut(s) 146
BmsI GCATC 2 cut(s) 316, 463
BpiI GAAGAC 5 cut(s) 186, 303, 378, 386, 451
Bpu10I CCTNAGC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 10
BpuMI CCSGG 1 cut(s) 146
BsaHI GRCGYC 2 cut(s) 125, 383
BsaJI CCNNGG 1 cut(s) 144
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 152
Bse21I CCTNAGG 1 cut(s) 515
Bse3DI GCAATG 2 cut(s) 381, 413
BseDI CCNNGG 1 cut(s) 144
BseLI CCNNNNNNNGG 2 cut(s) 151, 152
BseMI GCAATG 2 cut(s) 381, 413
BseMII CTCAG 3 cut(s) 24, 57, 141
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 1 cut(s) 40
BshNI GGYRCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 60
BsiSI CCGG 2 cut(s) 146, 484
BslI CCNNNNNNNGG 2 cut(s) 151, 152
BsmAI GTCTC 1 cut(s) 85
BsnI GGCC 1 cut(s) 40
Bsp143I GATC 3 cut(s) 85, 580, 592
BspACI CCGC 1 cut(s) 70
BspANI GGCC 1 cut(s) 40
BspCNI CTCAG 3 cut(s) 23, 58, 142
BspLI GGNNCC 1 cut(s) 7
BspMI ACCTGC 1 cut(s) 409
BspPI GGATC 1 cut(s) 80
BspT107I GGYRCC 1 cut(s) 5
BsrBI CCGCTC 1 cut(s) 70
BsrDI GCAATG 2 cut(s) 381, 413
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 3 cut(s) 85, 580, 592
BssNI GRCGYC 2 cut(s) 125, 383
Bst4CI ACNGT 4 cut(s) 61, 251, 470, 480
Bst6I CTCTTC 2 cut(s) 242, 258
BstACI GRCGYC 2 cut(s) 125, 383
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 5 cut(s) 10, 66, 94, 150, 515
BstKTI GATC 3 cut(s) 88, 583, 595
BstMAI GTCTC 1 cut(s) 85
BstMBI GATC 3 cut(s) 85, 580, 592
BstMCI CGRYCG 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 144
BstV2I GAAGAC 5 cut(s) 186, 303, 378, 386, 451
BstX2I RGATCY 1 cut(s) 592
BstYI RGATCY 1 cut(s) 592
Bsu36I CCTNAGG 1 cut(s) 515
BsuRI GGCC 1 cut(s) 40
BtsI GCAGTG 1 cut(s) 546
BtsIMutI CAGTG 3 cut(s) 372, 476, 546
BveI ACCTGC 1 cut(s) 409
Cac8I GCNNGC 1 cut(s) 42
Cfr13I GGNCC 1 cut(s) 503
CseI GACGC 1 cut(s) 133
Csp6I GTAC 1 cut(s) 247
CviAII CATG 1 cut(s) 410
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 5 cut(s) 10, 66, 94, 150, 515
DpnI GATC 3 cut(s) 87, 582, 594
DpnII GATC 3 cut(s) 85, 580, 592
Eam1104I CTCTTC 2 cut(s) 242, 258
EarI CTCTTC 2 cut(s) 242, 258
Eco47I GGWCC 1 cut(s) 503
Eco57I CTGAAG 1 cut(s) 423
Eco81I CCTNAGG 1 cut(s) 515
EcoT22I ATGCAT 1 cut(s) 415
FaeI CATG 1 cut(s) 413
FaiI YATR 3 cut(s) 245, 302, 411
FalI AAGNNNNNCTT 2 cut(s) 595, 627
FatI CATG 1 cut(s) 409
FblI GTMKAC 1 cut(s) 607
HaeIII GGCC 1 cut(s) 40
HapII CCGG 2 cut(s) 146, 484
HgaI GACGC 1 cut(s) 133
Hin1I GRCGYC 2 cut(s) 125, 383
Hin1II CATG 1 cut(s) 413
HinfI GANTC 2 cut(s) 14, 509
HpaII CCGG 2 cut(s) 146, 484
HphI GGTGA 1 cut(s) 132
Hpy166II GTNNAC 2 cut(s) 214, 608
Hpy188I TCNGA 6 cut(s) 13, 67, 76, 85, 403, 580
Hpy188III TCNNGA 1 cut(s) 55
Hpy8I GTNNAC 2 cut(s) 214, 608
Hpy99I CGWCG 2 cut(s) 127, 193
HpyAV CCTTC 4 cut(s) 195, 262, 494, 621
HpyCH4III ACNGT 4 cut(s) 61, 251, 470, 480
HpyCH4IV ACGT 2 cut(s) 352, 383
HpyCH4V TGCA 6 cut(s) 274, 413, 418, 476, 539, 586
HpyF3I CTNAG 5 cut(s) 10, 66, 94, 150, 515
HpySE526I ACGT 2 cut(s) 352, 383
Hsp92I GRCGYC 2 cut(s) 125, 383
Hsp92II CATG 1 cut(s) 413
Kzo9I GATC 3 cut(s) 85, 580, 592
LmnI GCTCC 1 cut(s) 433
LpnPI CCDG 7 cut(s) 54, 159, 245, 278, 404, 497, 519
LweI GCATC 2 cut(s) 316, 463
MaeII ACGT 2 cut(s) 352, 383
MaeIII GTNAC 1 cut(s) 464
MalI GATC 3 cut(s) 87, 582, 594
MbiI CCGCTC 1 cut(s) 70
MboI GATC 3 cut(s) 85, 580, 592
MboII GAAGA 9 cut(s) 186, 229, 275, 308, 317, 338, 378, 391, 456
MflI RGATCY 1 cut(s) 592
MluCI AATT 4 cut(s) 117, 358, 459, 560
MnlI CCTC 6 cut(s) 19, 30, 122, 145, 171, 448
Mph1103I ATGCAT 1 cut(s) 415
MseI TTAA 3 cut(s) 339, 357, 438
MslI CAYNNNNRTG 2 cut(s) 59, 173
MspI CCGG 2 cut(s) 146, 484
MspR9I CCNGG 1 cut(s) 146
NciI CCSGG 1 cut(s) 146
NdeII GATC 3 cut(s) 85, 580, 592
NlaIII CATG 1 cut(s) 413
NlaIV GGNNCC 1 cut(s) 7
NsiI ATGCAT 1 cut(s) 415
OliI CACNNNNGTG 1 cut(s) 59
PaqCI CACCTGC 1 cut(s) 409
PcsI WCGNNNNNNNCGW 1 cut(s) 549
PfeI GAWTC 2 cut(s) 14, 509
PflFI GACNNNGTC 1 cut(s) 61
Psp1406I AACGTT 1 cut(s) 352
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 503
PsuI RGATCY 1 cut(s) 592
PsyI GACNNNGTC 1 cut(s) 61
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 2 cut(s) 59, 173
SaqAI TTAA 3 cut(s) 339, 357, 438
Sau3AI GATC 3 cut(s) 85, 580, 592
Sau96I GGNCC 1 cut(s) 503
ScrFI CCNGG 1 cut(s) 146
SfaNI GCATC 2 cut(s) 316, 463
SinI GGWCC 1 cut(s) 503
SmiMI CAYNNNNRTG 2 cut(s) 59, 173
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
Sse9I AATT 4 cut(s) 117, 358, 459, 560
SsiI CCGC 1 cut(s) 70
StyD4I CCNGG 1 cut(s) 144
TaaI ACNGT 4 cut(s) 61, 251, 470, 480
TaiI ACGT 2 cut(s) 355, 386
TaqI TCGA 1 cut(s) 122
TasI AATT 4 cut(s) 117, 358, 459, 560
TfiI GAWTC 2 cut(s) 14, 509
Tru1I TTAA 3 cut(s) 339, 357, 438
Tru9I TTAA 3 cut(s) 339, 357, 438
TscAI CASTG 3 cut(s) 372, 483, 553
TspDTI ATGAA 3 cut(s) 63, 392, 398
TspGWI ACGGA 1 cut(s) 615
TspRI CASTG 3 cut(s) 372, 483, 553
Tth111I GACNNNGTC 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 503
XapI RAATTY 2 cut(s) 117, 560
XmiI GTMKAC 1 cut(s) 607
ZraI GACGTC 1 cut(s) 384
Zsp2I ATGCAT 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.