Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000811

Physical Location & Seq

Genomic Coordinates Forward (+)

59096365 .. 59099765

Gene Structure 3401 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00378640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGAATCCACTACTCCACGATAGTGAAGATTATCGGTTGATTGAAAAGTATCTTCTTACTACTCATGCCCCTACACATACAGTGGGTTTGCATTTTGATACTCTAGTGCATATTGTCCTGATTCTTATGGATGAGTGGAATATAAAACCTCCTAGTTGGGTGAGTGCCGATCCTTGTGACGGTGGGAAGTTTGGGAAGGGGATTTACTTTGCTGACCTTGTCAGTAAGAGTGCTCGGTATTGCTATACAGATAAGAAAAATCCTGTGGGCCTCATGCTTTTAAGTGAAGTTTCCTTGGGAGAGATCCATGAGCTCATGAAGGCCACATATATGGATAAACCTCCTAAGGGAAAGCACTCTACGAAGGGACTTGGCAAGAAAAAACCTGACTCAAGTATTGTGGATCCGAAAATGTTACTGGAACTCTTCTCGATGTACCGTGAGTGGCAGGAGGAGAATGTCAAAAAGCTGAGCCAAAAACAGGTAGAGATTGGGGAACTTAAAGGAAGGTTGACGGAGGTTATTAGCAACCGTGATGCGGTGTGCAAGAGAATATCCGCGAAGGACCGAGATTGTCGAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0003950 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006464 GO:0006471 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016070 GO:0016740 GO:0016757 GO:0016763 GO:0016874 GO:0016886 GO:0019538 GO:0022616 GO:0033554 GO:0033993 GO:0034641 GO:0034645 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0071704 GO:0090304 GO:0097305 GO:0140097 GO:1901360 GO:1901564 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 map03410 map04210 map04212 map04214 map04217

Pfam Domains

Protein Families

BRCT PADR1 PARP PARP_reg WGR zf-PARP

Protein Analysis

194

Amino Acids

22.1

Weight (kDa)

8.55

Isoelectric Point (pI)

27.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PARP	PF00644	56 - 132	1.6e-27	Poly(ADP-ribose) polymerase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66290 AT5G66290
fragaria_vesca	FvH4_1g12000 FvH4_2g21980
malus_domestica	MD02G1134200.v1.1 MD15G1247200.v1.1
prunus_persica	Prupe.7G166600_v2.0.a1 Prupe.7G166600_v2.0.a1
pyrus_communis	pycom02g10580
rosa_chinensis	RchiOBHm_Chr0c39g0503221 RchiOBHm_Chr1g0353231 RchiOBHm_Chr2g0099641 RchiOBHm_Chr2g0126361 RchiOBHm_Chr5g0080231
rosa_laevigata	RLG00000008117 RLG00000016900 RLG00000021865
rosa_multiflora	Rmu_sc0000394.1_g000010 Rmu_sc0000543.1_g000026 Rmu_sc0005120.1_g000016 Rmu_sc0006325.1_g000056 Rmu_sc0010438.1_g000001 Rmu_sc0035741.1_g000001 Rmu_ssc0000366.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142880 Rroxscaffold_3G00248750 Rroxscaffold_5G00378640 Rroxscaffold_5G00382790 Rroxscaffold_7G00190790
rosa_rugosa	Rorug02G0081700 Rorug02G0258300 Rorug06G0170500
rosa_samantha	Rh1CG034700 Rh1DG035400 Rh2AG131100 Rh2AG189600 Rh2AG189700 Rh2BG134500 Rh2BG230100 Rh2BG328200 Rh2CG135300 Rh2DG135900 Rh2DG196000 Rh2DG196100 Rh2DG196200 Rh3DG312100 Rh4CG305000 Rh4DG111800 Rh5AG369300 Rh5AG496200 Rh5AG496300 Rh5BG555300 Rh5CG578200 Rh5DG254100 Rh5DG254200 Rh6BG167500 Rh6BG167600 Rh6BG241100 Rh7AG282200 Rh7CG301400 Rh7CG301500 Rh7DG435700 Rh7DG435800
rosa_wichuraiana	Rw0G008970 Rw2G010150 Rw3G024850 Rw4G013560 Rw5G022800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	560
AciI	CCGC	2 cut(s)	539, 558
AclWI	GGATC	4 cut(s)	164, 298, 398, 411
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	4 cut(s)	179, 347, 481, 538
AgsI	TTSAA	1 cut(s)	44
AleI	CACNNNNGTG	1 cut(s)	21
AluBI	AGCT	2 cut(s)	313, 469
AluI	AGCT	2 cut(s)	313, 469
Alw21I	GWGCWC	2 cut(s)	235, 315
AlwI	GGATC	4 cut(s)	164, 298, 398, 411
AoxI	GGCC	2 cut(s)	268, 321
AspS9I	GGNCC	2 cut(s)	268, 565
AsuHPI	GGTGA	1 cut(s)	172
AvaII	GGWCC	1 cut(s)	565
AxyI	CCTNAGG	1 cut(s)	345
BaeI	ACNNNNGTAYC	2 cut(s)	90, 123
BamHI	GGATCC	1 cut(s)	403
BanII	GRGCYC	1 cut(s)	315
BarI	GAAGNNNNNNTAC	2 cut(s)	188, 220
Bbv12I	GWGCWC	2 cut(s)	235, 315
BfaI	CTAG	2 cut(s)	104, 153
BlpI	GCTNAGC	1 cut(s)	470
Bme18I	GGWCC	1 cut(s)	565
BmgT120I	GGNCC	2 cut(s)	268, 565
BmiI	GGNNCC	1 cut(s)	405
BmsI	GCATC	1 cut(s)	526
Bpu1102I	GCTNAGC	1 cut(s)	470
BpuEI	CTTGAG	1 cut(s)	376
BsaJI	CCNNGG	1 cut(s)	294
Bsc4I	CCNNNNNNNGG	4 cut(s)	179, 347, 481, 538
Bse1I	ACTGG	1 cut(s)	423
Bse21I	CCTNAGG	1 cut(s)	345
BseDI	CCNNGG	1 cut(s)	294
BseGI	GGATG	1 cut(s)	136
BseLI	CCNNNNNNNGG	4 cut(s)	179, 347, 481, 538
BseMII	CTCAG	1 cut(s)	461
BseNI	ACTGG	1 cut(s)	423
BseRI	GAGGAG	1 cut(s)	467
Bsh1236I	CGCG	1 cut(s)	560
BshFI	GGCC	2 cut(s)	270, 323
BsiHKAI	GWGCWC	2 cut(s)	235, 315
BslFI	GGGAC	1 cut(s)	381
BslI	CCNNNNNNNGG	4 cut(s)	179, 347, 481, 538
BsmFI	GGGAC	1 cut(s)	381
BsnI	GGCC	2 cut(s)	270, 323
Bsp1286I	GDGCHC	2 cut(s)	235, 315
Bsp143I	GATC	3 cut(s)	169, 303, 403
Bsp1720I	GCTNAGC	1 cut(s)	470
BspACI	CCGC	2 cut(s)	539, 558
BspANI	GGCC	2 cut(s)	270, 323
BspCNI	CTCAG	1 cut(s)	462
BspFNI	CGCG	1 cut(s)	560
BspHI	TCATGA	1 cut(s)	315
BspLI	GGNNCC	1 cut(s)	405
BspPI	GGATC	4 cut(s)	164, 298, 398, 411
BsrI	ACTGG	1 cut(s)	423
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	3 cut(s)	169, 303, 403
BssT1I	CCWWGG	1 cut(s)	294
Bst4CI	ACNGT	4 cut(s)	82, 182, 440, 533
Bst6I	CTCTTC	1 cut(s)	431
BstDEI	CTNAG	2 cut(s)	345, 470
BstF5I	GGATG	1 cut(s)	136
BstFNI	CGCG	1 cut(s)	560
BstKTI	GATC	3 cut(s)	172, 306, 406
BstMBI	GATC	3 cut(s)	169, 303, 403
BstUI	CGCG	1 cut(s)	560
BstX2I	RGATCY	2 cut(s)	303, 403
BstXI	CCANNNNNNTGG	1 cut(s)	331
BstYI	RGATCY	2 cut(s)	303, 403
Bsu36I	CCTNAGG	1 cut(s)	345
BsuRI	GGCC	2 cut(s)	270, 323
BtsCI	GGATG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	87
CciI	TCATGA	1 cut(s)	315
Cfr13I	GGNCC	2 cut(s)	268, 565
Csp6I	GTAC	1 cut(s)	436
CspCI	CAANNNNNGTGG	2 cut(s)	381, 416
CviAII	CATG	4 cut(s)	65, 274, 308, 316
CviJI	RGCY	5 cut(s)	270, 313, 323, 469, 474
CviKI_1	RGCY	5 cut(s)	270, 313, 323, 469, 474
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	2 cut(s)	345, 470
DpnI	GATC	3 cut(s)	171, 305, 405
DpnII	GATC	3 cut(s)	169, 303, 403
Eam1104I	CTCTTC	1 cut(s)	431
EarI	CTCTTC	1 cut(s)	431
Ecl136II	GAGCTC	1 cut(s)	313
Eco130I	CCWWGG	1 cut(s)	294
Eco24I	GRGCYC	1 cut(s)	315
Eco47I	GGWCC	1 cut(s)	565
Eco53kI	GAGCTC	1 cut(s)	313
Eco81I	CCTNAGG	1 cut(s)	345
EcoICRI	GAGCTC	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	4 cut(s)	68, 277, 311, 319
FaqI	GGGAC	1 cut(s)	381
FatI	CATG	4 cut(s)	64, 273, 307, 315
FokI	GGATG	1 cut(s)	143
FriOI	GRGCYC	1 cut(s)	315
FspBI	CTAG	2 cut(s)	104, 153
HaeIII	GGCC	2 cut(s)	270, 323
Hin1II	CATG	4 cut(s)	68, 277, 311, 319
HincII	GTYRAC	1 cut(s)	513
HindII	GTYRAC	1 cut(s)	513
HinfI	GANTC	3 cut(s)	4, 121, 389
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	1 cut(s)	513
Hpy188I	TCNGA	1 cut(s)	408
Hpy188III	TCNNGA	3 cut(s)	118, 316, 430
Hpy8I	GTNNAC	1 cut(s)	513
HpyAV	CCTTC	5 cut(s)	190, 313, 358, 501, 556
HpyCH4III	ACNGT	4 cut(s)	82, 182, 440, 533
HpyCH4V	TGCA	3 cut(s)	91, 109, 546
HpyF3I	CTNAG	2 cut(s)	345, 470
Hsp92II	CATG	4 cut(s)	68, 277, 311, 319
Kzo9I	GATC	3 cut(s)	169, 303, 403
LpnPI	CCDG	6 cut(s)	131, 276, 399, 404, 434, 467
LweI	GCATC	1 cut(s)	526
MaeI	CTAG	2 cut(s)	104, 153
MaeIII	GTNAC	2 cut(s)	176, 414
MalI	GATC	3 cut(s)	171, 305, 405
MboI	GATC	3 cut(s)	169, 303, 403
MboII	GAAGA	3 cut(s)	38, 44, 418
MflI	RGATCY	2 cut(s)	303, 403
MhlI	GDGCHC	2 cut(s)	235, 315
MlyI	GAGTC	1 cut(s)	383
MnlI	CCTC	5 cut(s)	159, 281, 351, 445, 511
MseI	TTAA	2 cut(s)	281, 501
MslI	CAYNNNNRTG	2 cut(s)	21, 329
MvnI	CGCG	1 cut(s)	560
NdeII	GATC	3 cut(s)	169, 303, 403
NlaIII	CATG	4 cut(s)	68, 277, 311, 319
NlaIV	GGNNCC	1 cut(s)	405
NmuCI	GTSAC	1 cut(s)	176
OliI	CACNNNNGTG	1 cut(s)	21
PagI	TCATGA	1 cut(s)	315
PfeI	GAWTC	2 cut(s)	4, 121
PflFI	GACNNNGTC	1 cut(s)	218
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
Psp124BI	GAGCTC	1 cut(s)	315
PspN4I	GGNNCC	1 cut(s)	405
PspPI	GGNCC	2 cut(s)	268, 565
PsuI	RGATCY	2 cut(s)	303, 403
PsyI	GACNNNGTC	1 cut(s)	218
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
RseI	CAYNNNNRTG	2 cut(s)	21, 329
SacI	GAGCTC	1 cut(s)	315
SaqAI	TTAA	2 cut(s)	281, 501
Sau3AI	GATC	3 cut(s)	169, 303, 403
Sau96I	GGNCC	2 cut(s)	268, 565
SchI	GAGTC	1 cut(s)	383
SduI	GDGCHC	2 cut(s)	235, 315
SetI	ASST	9 cut(s)	151, 219, 315, 343, 388, 471, 486, 512, 522
SfaNI	GCATC	1 cut(s)	526
SinI	GGWCC	1 cut(s)	565
SmiMI	CAYNNNNRTG	2 cut(s)	21, 329
SmlI	CTYRAG	1 cut(s)	391
SmoI	CTYRAG	1 cut(s)	391
SsiI	CCGC	2 cut(s)	539, 558
SspMI	CTAG	2 cut(s)	104, 153
SstI	GAGCTC	1 cut(s)	315
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	4 cut(s)	82, 182, 440, 533
TaqI	TCGA	2 cut(s)	431, 577
TaqII	GACCGA	1 cut(s)	582
TfiI	GAWTC	2 cut(s)	4, 121
Tru1I	TTAA	2 cut(s)	281, 501
Tru9I	TTAA	2 cut(s)	281, 501
TscAI	CASTG	1 cut(s)	87
TseFI	GTSAC	1 cut(s)	176
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	2 cut(s)	17, 332
TspGWI	ACGGA	1 cut(s)	530
TspRI	CASTG	1 cut(s)	87
Tth111I	GACNNNGTC	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	565
XspI	CTAG	2 cut(s)	104, 153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.