Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035741.1

Orthogroup ID

OG0000811

Physical Location & Seq

Genomic Coordinates Reverse (-)

1042 .. 1906

Gene Structure 865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035741.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atggctatagttcttttcaatgttatttttcaaagttctcgatttacgaactttgtgggaatacttagccaaggactaagaaaagctcctcctgaagctccagctactggttatatgtttggcaaggggatttactttgctgaccttgtcagtaagagtgctcagtattgctatacagataagaaaaatcatatgggcctcatgcttttaagtgaagtttccttgggagagatccatgagctcatgaaggccacatatatggataaacctcctaagggaaagcactctacgaagggacttggcaagaaaaaacctgagtcggaggcagcagcaagtaaaaggtggagaaagttgtttgcaatgagagcacctcaagaattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0003950 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006464 GO:0006471 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016070 GO:0016740 GO:0016757 GO:0016763 GO:0016874 GO:0016886 GO:0019538 GO:0022616 GO:0033554 GO:0033993 GO:0034641 GO:0034645 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0071704 GO:0090304 GO:0097305 GO:0140097 GO:1901360 GO:1901564 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 map03410 map04210 map04212 map04214 map04217

Pfam Domains

Protein Families

BRCT PADR1 PARP PARP_reg WGR zf-PARP

Protein Analysis

127

Amino Acids

14.22

Weight (kDa)

9.83

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66290 AT5G66290
fragaria_vesca	FvH4_1g12000 FvH4_2g21980
malus_domestica	MD02G1134200.v1.1 MD15G1247200.v1.1
prunus_persica	Prupe.7G166600_v2.0.a1 Prupe.7G166600_v2.0.a1
pyrus_communis	pycom02g10580
rosa_chinensis	RchiOBHm_Chr0c39g0503221 RchiOBHm_Chr1g0353231 RchiOBHm_Chr2g0099641 RchiOBHm_Chr2g0126361 RchiOBHm_Chr5g0080231
rosa_laevigata	RLG00000008117 RLG00000016900 RLG00000021865
rosa_multiflora	Rmu_sc0000394.1_g000010 Rmu_sc0000543.1_g000026 Rmu_sc0005120.1_g000016 Rmu_sc0006325.1_g000056 Rmu_sc0010438.1_g000001 Rmu_sc0035741.1_g000001 Rmu_ssc0000366.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142880 Rroxscaffold_3G00248750 Rroxscaffold_5G00378640 Rroxscaffold_5G00382790 Rroxscaffold_7G00190790
rosa_rugosa	Rorug02G0081700 Rorug02G0258300 Rorug06G0170500
rosa_samantha	Rh1CG034700 Rh1DG035400 Rh2AG131100 Rh2AG189600 Rh2AG189700 Rh2BG134500 Rh2BG230100 Rh2BG328200 Rh2CG135300 Rh2DG135900 Rh2DG196000 Rh2DG196100 Rh2DG196200 Rh3DG312100 Rh4CG305000 Rh4DG111800 Rh5AG369300 Rh5AG496200 Rh5AG496300 Rh5BG555300 Rh5CG578200 Rh5DG254100 Rh5DG254200 Rh6BG167500 Rh6BG167600 Rh6BG241100 Rh7AG282200 Rh7CG301400 Rh7CG301500 Rh7DG435700 Rh7DG435800
rosa_wichuraiana	Rw0G008970 Rw2G010150 Rw3G024850 Rw4G013560 Rw5G022800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	107
AclWI	GGATC	1 cut(s)	226
AcsI	RAATTY	1 cut(s)	377
AcuI	CTGAAG	1 cut(s)	114
AfiI	CCNNNNNNNGG	2 cut(s)	107, 275
AgsI	TTSAA	2 cut(s)	19, 32
AluBI	AGCT	4 cut(s)	86, 98, 104, 241
AluI	AGCT	4 cut(s)	86, 98, 104, 241
Alw21I	GWGCWC	3 cut(s)	163, 243, 370
AlwI	GGATC	1 cut(s)	226
AlwNI	CAGNNNCTG	1 cut(s)	107
AoxI	GGCC	2 cut(s)	196, 249
ApeKI	GCWGC	2 cut(s)	326, 329
ApoI	RAATTY	1 cut(s)	377
AspS9I	GGNCC	1 cut(s)	196
AxyI	CCTNAGG	1 cut(s)	273
BanII	GRGCYC	1 cut(s)	243
Bbv12I	GWGCWC	3 cut(s)	163, 243, 370
BbvI	GCAGC	2 cut(s)	338, 341
BfmI	CTRYAG	1 cut(s)	6
BisI	GCNGC	2 cut(s)	327, 330
BlsI	GCNGC	2 cut(s)	328, 331
BmgT120I	GGNCC	1 cut(s)	196
BplI	GAGNNNNNCTC	1 cut(s)	355
BpmI	CTGGAG	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	357
BsaJI	CCNNGG	2 cut(s)	70, 222
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 275
Bse1I	ACTGG	1 cut(s)	112
Bse21I	CCTNAGG	1 cut(s)	273
Bse3DI	GCAATG	1 cut(s)	366
BseDI	CCNNGG	2 cut(s)	70, 222
BseLI	CCNNNNNNNGG	2 cut(s)	107, 275
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	2 cut(s)	176, 306
BseNI	ACTGG	1 cut(s)	112
BseRI	GAGGAG	1 cut(s)	78
BseXI	GCAGC	2 cut(s)	338, 341
BshFI	GGCC	2 cut(s)	198, 251
BsiHKAI	GWGCWC	3 cut(s)	163, 243, 370
BslFI	GGGAC	1 cut(s)	309
BslI	CCNNNNNNNGG	2 cut(s)	107, 275
BsmFI	GGGAC	1 cut(s)	309
BsnI	GGCC	2 cut(s)	198, 251
Bsp1286I	GDGCHC	3 cut(s)	163, 243, 370
Bsp143I	GATC	1 cut(s)	231
BspANI	GGCC	2 cut(s)	198, 251
BspCNI	CTCAG	2 cut(s)	175, 307
BspHI	TCATGA	1 cut(s)	243
BspPI	GGATC	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	366
BsrI	ACTGG	1 cut(s)	112
BssECI	CCNNGG	2 cut(s)	70, 222
BssMI	GATC	1 cut(s)	231
BssT1I	CCWWGG	2 cut(s)	70, 222
BstDEI	CTNAG	5 cut(s)	65, 77, 162, 273, 315
BstKTI	GATC	1 cut(s)	234
BstMBI	GATC	1 cut(s)	231
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstSFI	CTRYAG	1 cut(s)	6
BstV1I	GCAGC	2 cut(s)	338, 341
BstX2I	RGATCY	1 cut(s)	231
BstXI	CCANNNNNNTGG	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	231
Bsu36I	CCTNAGG	1 cut(s)	273
BsuRI	GGCC	2 cut(s)	198, 251
CaiI	CAGNNNCTG	1 cut(s)	107
CciI	TCATGA	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	196
CviAII	CATG	3 cut(s)	202, 236, 244
CviJI	RGCY	8 cut(s)	5, 69, 86, 98, 104, 198, 241, 251
CviKI_1	RGCY	8 cut(s)	5, 69, 86, 98, 104, 198, 241, 251
DdeI	CTNAG	5 cut(s)	65, 77, 162, 273, 315
DpnI	GATC	1 cut(s)	233
DpnII	GATC	1 cut(s)	231
Ecl136II	GAGCTC	1 cut(s)	241
Eco130I	CCWWGG	2 cut(s)	70, 222
Eco24I	GRGCYC	1 cut(s)	243
Eco53kI	GAGCTC	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	114
Eco81I	CCTNAGG	1 cut(s)	273
EcoICRI	GAGCTC	1 cut(s)	241
EcoT14I	CCWWGG	2 cut(s)	70, 222
EcoT38I	GRGCYC	1 cut(s)	243
ErhI	CCWWGG	2 cut(s)	70, 222
FaeI	CATG	3 cut(s)	205, 239, 247
FaqI	GGGAC	1 cut(s)	309
FatI	CATG	3 cut(s)	201, 235, 243
FauNDI	CATATG	1 cut(s)	192
Fnu4HI	GCNGC	2 cut(s)	327, 330
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	2 cut(s)	327, 330
GluI	GCNGC	2 cut(s)	327, 330
GsuI	CTGGAG	1 cut(s)	84
HaeIII	GGCC	2 cut(s)	198, 251
Hin1II	CATG	3 cut(s)	205, 239, 247
HinfI	GANTC	1 cut(s)	317
Hpy188I	TCNGA	1 cut(s)	322
Hpy188III	TCNNGA	4 cut(s)	39, 92, 244, 374
HpyAV	CCTTC	2 cut(s)	241, 286
HpyCH4V	TGCA	1 cut(s)	359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	5 cut(s)	65, 77, 162, 273, 315
Hsp92II	CATG	3 cut(s)	205, 239, 247
Kzo9I	GATC	1 cut(s)	231
LmnI	GCTCC	2 cut(s)	91, 103
LpnPI	CCDG	4 cut(s)	93, 105, 114, 327
Lsp1109I	GCAGC	2 cut(s)	338, 341
MalI	GATC	1 cut(s)	233
MboI	GATC	1 cut(s)	231
MflI	RGATCY	1 cut(s)	231
MhlI	GDGCHC	3 cut(s)	163, 243, 370
MluCI	AATT	1 cut(s)	377
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	5 cut(s)	99, 209, 279, 316, 381
MseI	TTAA	1 cut(s)	209
MslI	CAYNNNNRTG	1 cut(s)	257
MwoI	GCNNNNNNNGC	1 cut(s)	365
NdeI	CATATG	1 cut(s)	192
NdeII	GATC	1 cut(s)	231
NlaIII	CATG	3 cut(s)	205, 239, 247
PagI	TCATGA	1 cut(s)	243
PflFI	GACNNNGTC	1 cut(s)	146
PflMI	CCANNNNNTGG	1 cut(s)	107
PkrI	GCNGC	2 cut(s)	328, 331
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
Psp124BI	GAGCTC	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	196
PstNI	CAGNNNCTG	1 cut(s)	107
PsuI	RGATCY	1 cut(s)	231
PsyI	GACNNNGTC	1 cut(s)	146
RseI	CAYNNNNRTG	1 cut(s)	257
SacI	GAGCTC	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	209
SatI	GCNGC	2 cut(s)	327, 330
Sau3AI	GATC	1 cut(s)	231
Sau96I	GGNCC	1 cut(s)	196
SchI	GAGTC	1 cut(s)	326
SduI	GDGCHC	3 cut(s)	163, 243, 370
SetI	ASST	9 cut(s)	88, 100, 106, 147, 243, 271, 316, 344, 373
SfcI	CTRYAG	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	372
SmoI	CTYRAG	1 cut(s)	372
Sse9I	AATT	1 cut(s)	377
SstI	GAGCTC	1 cut(s)	243
StyI	CCWWGG	2 cut(s)	70, 222
TaqI	TCGA	1 cut(s)	40
TasI	AATT	1 cut(s)	377
Tru1I	TTAA	1 cut(s)	209
Tru9I	TTAA	1 cut(s)	209
TseI	GCWGC	2 cut(s)	326, 329
TspDTI	ATGAA	1 cut(s)	260
Tth111I	GACNNNGTC	1 cut(s)	146
Van91I	CCANNNNNTGG	1 cut(s)	107
XapI	RAATTY	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.