Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000543.1

Orthogroup ID

OG0000811

Physical Location & Seq

Genomic Coordinates Forward (+)

91629 .. 92559

Gene Structure 931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000543.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

atgttcagcatagctctcagctatatttgtatgtgtattctcggagaaggacctgatgatgggggccaagacaatgcttgtccaagagctagaaagtggattcttgatcatgatggtgtcacacacatgccttcttggggaaagacttggctttcggtagagattggggaacttaaaggaaggttgacggaggttattagcaactgtgatgcagtgtgcaagagaatatccgcagaaggaccagagtctcttcggtcatctgtcaagccattagttatctgcaccgcacaccaagaacaccaatcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0019742 GO:0019745 GO:0031559 GO:0042300 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

102

Amino Acids

11.18

Weight (kDa)

5.73

Isoelectric Point (pI)

51.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66290 AT5G66290
fragaria_vesca	FvH4_1g12000 FvH4_2g21980
malus_domestica	MD02G1134200.v1.1 MD15G1247200.v1.1
prunus_persica	Prupe.7G166600_v2.0.a1 Prupe.7G166600_v2.0.a1
pyrus_communis	pycom02g10580
rosa_chinensis	RchiOBHm_Chr0c39g0503221 RchiOBHm_Chr1g0353231 RchiOBHm_Chr2g0099641 RchiOBHm_Chr2g0126361 RchiOBHm_Chr5g0080231
rosa_laevigata	RLG00000008117 RLG00000016900 RLG00000021865
rosa_multiflora	Rmu_sc0000394.1_g000010 Rmu_sc0000543.1_g000026 Rmu_sc0005120.1_g000016 Rmu_sc0006325.1_g000056 Rmu_sc0010438.1_g000001 Rmu_sc0035741.1_g000001 Rmu_ssc0000366.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142880 Rroxscaffold_3G00248750 Rroxscaffold_5G00378640 Rroxscaffold_5G00382790 Rroxscaffold_7G00190790
rosa_rugosa	Rorug02G0081700 Rorug02G0258300 Rorug06G0170500
rosa_samantha	Rh1CG034700 Rh1DG035400 Rh2AG131100 Rh2AG189600 Rh2AG189700 Rh2BG134500 Rh2BG230100 Rh2BG328200 Rh2CG135300 Rh2DG135900 Rh2DG196000 Rh2DG196100 Rh2DG196200 Rh3DG312100 Rh4CG305000 Rh4DG111800 Rh5AG369300 Rh5AG496200 Rh5AG496300 Rh5BG555300 Rh5CG578200 Rh5DG254100 Rh5DG254200 Rh6BG167500 Rh6BG167600 Rh6BG241100 Rh7AG282200 Rh7CG301400 Rh7CG301500 Rh7DG435700 Rh7DG435800
rosa_wichuraiana	Rw0G008970 Rw2G010150 Rw3G024850 Rw4G013560 Rw5G022800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	231, 285
AfiI	CCNNNNNNNGG	2 cut(s)	59, 137
AluBI	AGCT	3 cut(s)	14, 21, 89
AluI	AGCT	3 cut(s)	14, 21, 89
Alw26I	GTCTC	1 cut(s)	252
AoxI	GGCC	1 cut(s)	64
ArsI	GACNNNNNNTTYG	2 cut(s)	136, 168
AspS9I	GGNCC	3 cut(s)	50, 64, 239
AvaII	GGWCC	2 cut(s)	50, 239
BccI	CCATC	2 cut(s)	53, 107
BclI	TGATCA	1 cut(s)	106
BcoDI	GTCTC	1 cut(s)	252
BfaI	CTAG	1 cut(s)	90
Bme18I	GGWCC	2 cut(s)	50, 239
BmgT120I	GGNCC	3 cut(s)	50, 64, 239
BmiI	GGNNCC	1 cut(s)	65
BmsI	GCATC	1 cut(s)	199
BoxI	GACNNNNGTC	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 137
BseLI	CCNNNNNNNGG	2 cut(s)	59, 137
BseMII	CTCAG	1 cut(s)	31
BsgI	GTGCAG	1 cut(s)	265
BshFI	GGCC	1 cut(s)	66
BslI	CCNNNNNNNGG	2 cut(s)	59, 137
BsmAI	GTCTC	1 cut(s)	252
BsnI	GGCC	1 cut(s)	66
Bsp143I	GATC	1 cut(s)	106
BspACI	CCGC	2 cut(s)	231, 285
BspANI	GGCC	1 cut(s)	66
BspCNI	CTCAG	1 cut(s)	30
BspHI	TCATGA	1 cut(s)	109
BspLI	GGNNCC	1 cut(s)	65
BssMI	GATC	1 cut(s)	106
Bst4CI	ACNGT	1 cut(s)	206
Bst6I	CTCTTC	1 cut(s)	255
BstDEI	CTNAG	1 cut(s)	17
BstKTI	GATC	1 cut(s)	109
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	1 cut(s)	106
BstNSI	RCATGY	1 cut(s)	130
BstPAI	GACNNNNGTC	1 cut(s)	244
BsuRI	GGCC	1 cut(s)	66
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	219
CciI	TCATGA	1 cut(s)	109
Cfr13I	GGNCC	3 cut(s)	50, 64, 239
CviAII	CATG	2 cut(s)	110, 127
CviJI	RGCY	6 cut(s)	14, 21, 66, 89, 151, 268
CviKI_1	RGCY	6 cut(s)	14, 21, 66, 89, 151, 268
DdeI	CTNAG	1 cut(s)	17
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Eco47I	GGWCC	2 cut(s)	50, 239
EcoO109I	RGGNCCY	1 cut(s)	50
FaeI	CATG	2 cut(s)	113, 130
FaiI	YATR	5 cut(s)	11, 24, 32, 111, 128
FatI	CATG	2 cut(s)	109, 126
FbaI	TGATCA	1 cut(s)	106
FspBI	CTAG	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	66
Hin1II	CATG	2 cut(s)	113, 130
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HinfI	GANTC	2 cut(s)	100, 245
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	1 cut(s)	44
Hpy188III	TCNNGA	3 cut(s)	104, 110, 306
Hpy8I	GTNNAC	1 cut(s)	186
HpyAV	CCTTC	4 cut(s)	41, 141, 174, 230
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	3 cut(s)	212, 219, 282
HpyF3I	CTNAG	1 cut(s)	17
Hsp92II	CATG	2 cut(s)	113, 130
Ksp22I	TGATCA	1 cut(s)	106
Kzo9I	GATC	1 cut(s)	106
LpnPI	CCDG	2 cut(s)	66, 255
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	1 cut(s)	242
MlyI	GAGTC	1 cut(s)	254
MnlI	CCTC	1 cut(s)	184
MseI	TTAA	1 cut(s)	174
MslI	CAYNNNNRTG	2 cut(s)	114, 125
NdeII	GATC	1 cut(s)	106
NlaIII	CATG	2 cut(s)	113, 130
NlaIV	GGNNCC	1 cut(s)	65
NmuCI	GTSAC	1 cut(s)	118
NspI	RCATGY	1 cut(s)	130
PagI	TCATGA	1 cut(s)	109
PfeI	GAWTC	1 cut(s)	100
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
PpuMI	RGGWCCY	1 cut(s)	50
PshAI	GACNNNNGTC	1 cut(s)	244
Psp5II	RGGWCCY	1 cut(s)	50
PspN4I	GGNNCC	1 cut(s)	65
PspPI	GGNCC	3 cut(s)	50, 64, 239
PspPPI	RGGWCCY	1 cut(s)	50
RseI	CAYNNNNRTG	2 cut(s)	114, 125
SaqAI	TTAA	1 cut(s)	174
Sau3AI	GATC	1 cut(s)	106
Sau96I	GGNCC	3 cut(s)	50, 64, 239
SchI	GAGTC	1 cut(s)	254
SetI	ASST	6 cut(s)	16, 23, 55, 91, 185, 195
SfaNI	GCATC	1 cut(s)	199
SinI	GGWCC	2 cut(s)	50, 239
SmiMI	CAYNNNNRTG	2 cut(s)	114, 125
SsiI	CCGC	2 cut(s)	231, 285
SspMI	CTAG	1 cut(s)	90
TaaI	ACNGT	1 cut(s)	206
TaqII	GACCGA	1 cut(s)	243
TfiI	GAWTC	1 cut(s)	100
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	1 cut(s)	219
TseFI	GTSAC	1 cut(s)	118
Tsp45I	GTSAC	1 cut(s)	118
TspGWI	ACGGA	1 cut(s)	203
TspRI	CASTG	1 cut(s)	219
VpaK11BI	GGWCC	2 cut(s)	50, 239
XceI	RCATGY	1 cut(s)	130
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.