Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000811

Physical Location & Seq

Genomic Coordinates Forward (+)

17997767 .. 17999246

Gene Structure 1480 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG196100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGATGGGTAATGCTCGAGCCATTGGTGCGTTTCCGGTGCTTGTGTTAGTCCAGTTCTTTGTTATTGCAGCAGAGGCAAACACTCGGGAATATGGTTATATGCAGATTCTTATGGATGAGTGGAATATAAAACCTCCTAGTTGGGTGAGTGCCGATCCTTGTGACGGCTGGGAAGGTTCTCGGTTTACGAACTTTGTGGGAATACTTAGCCAAGGACTAAGAATAGCTCCTCCTGAAGCTCCAGCTACTGGTTATATGTATATGGATAAACCTCCTAAGGGAAAGCACTCTACGAAGGGACTTGGCAAGAAAAAACCTGAGTCGGACTATGTTAAATGGAGAGATGATGCCACTGTGCCCTGGGCAAACCAGTGGATTCACATGTCAGGGCCTCTGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0003950 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006464 GO:0006471 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016070 GO:0016740 GO:0016757 GO:0016763 GO:0016874 GO:0016886 GO:0019538 GO:0022616 GO:0033554 GO:0033993 GO:0034641 GO:0034645 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0071704 GO:0090304 GO:0097305 GO:0140097 GO:1901360 GO:1901564 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 map03410 map04210 map04212 map04214 map04217

Pfam Domains

Protein Families

BRCT PADR1 PARP PARP_reg WGR zf-PARP

Protein Analysis

133

Amino Acids

14.86

Weight (kDa)

7.83

Isoelectric Point (pI)

38.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PARP	PF00644	57 - 87	3.8e-09	Poly(ADP-ribose) polymerase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66290 AT5G66290
fragaria_vesca	FvH4_1g12000 FvH4_2g21980
malus_domestica	MD02G1134200.v1.1 MD15G1247200.v1.1
prunus_persica	Prupe.7G166600_v2.0.a1 Prupe.7G166600_v2.0.a1
pyrus_communis	pycom02g10580
rosa_chinensis	RchiOBHm_Chr0c39g0503221 RchiOBHm_Chr1g0353231 RchiOBHm_Chr2g0099641 RchiOBHm_Chr2g0126361 RchiOBHm_Chr5g0080231
rosa_laevigata	RLG00000008117 RLG00000016900 RLG00000021865
rosa_multiflora	Rmu_sc0000394.1_g000010 Rmu_sc0000543.1_g000026 Rmu_sc0005120.1_g000016 Rmu_sc0006325.1_g000056 Rmu_sc0010438.1_g000001 Rmu_sc0035741.1_g000001 Rmu_ssc0000366.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142880 Rroxscaffold_3G00248750 Rroxscaffold_5G00378640 Rroxscaffold_5G00382790 Rroxscaffold_7G00190790
rosa_rugosa	Rorug02G0081700 Rorug02G0258300 Rorug06G0170500
rosa_samantha	Rh1CG034700 Rh1DG035400 Rh2AG131100 Rh2AG189600 Rh2AG189700 Rh2BG134500 Rh2BG230100 Rh2BG328200 Rh2CG135300 Rh2DG135900 Rh2DG196000 Rh2DG196100 Rh2DG196200 Rh3DG312100 Rh4CG305000 Rh4DG111800 Rh5AG369300 Rh5AG496200 Rh5AG496300 Rh5BG555300 Rh5CG578200 Rh5DG254100 Rh5DG254200 Rh6BG167500 Rh6BG167600 Rh6BG241100 Rh7AG282200 Rh7CG301400 Rh7CG301500 Rh7DG435700 Rh7DG435800
rosa_wichuraiana	Rw0G008970 Rw2G010150 Rw3G024850 Rw4G013560 Rw5G022800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	248
AclWI	GGATC	1 cut(s)	149
AcuI	CTGAAG	1 cut(s)	255
AfiI	CCNNNNNNNGG	3 cut(s)	164, 248, 278
AflIII	ACRYGT	1 cut(s)	381
AjnI	CCWGG	1 cut(s)	359
AluBI	AGCT	4 cut(s)	227, 239, 245, 399
AluI	AGCT	4 cut(s)	227, 239, 245, 399
AlwI	GGATC	1 cut(s)	149
AlwNI	CAGNNNCTG	1 cut(s)	248
Ama87I	CYCGRG	2 cut(s)	15, 84
AoxI	GGCC	1 cut(s)	389
ApeKI	GCWGC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	389
AsuHPI	GGTGA	1 cut(s)	157
AvaI	CYCGRG	2 cut(s)	15, 84
AxyI	CCTNAGG	1 cut(s)	276
BaeGI	GKGCMC	1 cut(s)	360
BbvI	GCAGC	1 cut(s)	80
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	361
BfaI	CTAG	1 cut(s)	138
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
Bme1390I	CCNGG	1 cut(s)	361
BmeT110I	CYCGRG	2 cut(s)	15, 84
BmgT120I	GGNCC	1 cut(s)	389
BmrFI	CCNGG	1 cut(s)	361
BmsI	GCATC	1 cut(s)	337
BpmI	CTGGAG	1 cut(s)	225
BsaJI	CCNNGG	3 cut(s)	211, 359, 360
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	3 cut(s)	164, 248, 278
Bse1I	ACTGG	3 cut(s)	52, 253, 370
Bse21I	CCTNAGG	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	361
BseDI	CCNNGG	3 cut(s)	211, 359, 360
BseGI	GGATG	1 cut(s)	121
BseLI	CCNNNNNNNGG	3 cut(s)	164, 248, 278
BseMII	CTCAG	2 cut(s)	309, 386
BseNI	ACTGG	3 cut(s)	52, 253, 370
BseRI	GAGGAG	1 cut(s)	219
BseSI	GKGCMC	1 cut(s)	360
BseXI	GCAGC	1 cut(s)	80
BseYI	CCCAGC	1 cut(s)	168
BshFI	GGCC	1 cut(s)	391
BsiHKCI	CYCGRG	2 cut(s)	15, 84
BsiSI	CCGG	1 cut(s)	35
BslFI	GGGAC	1 cut(s)	312
BslI	CCNNNNNNNGG	3 cut(s)	164, 248, 278
BsmFI	GGGAC	1 cut(s)	312
BsnI	GGCC	1 cut(s)	391
BsoBI	CYCGRG	2 cut(s)	15, 84
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp143I	GATC	1 cut(s)	154
BspANI	GGCC	1 cut(s)	391
BspCNI	CTCAG	2 cut(s)	310, 387
BspPI	GGATC	1 cut(s)	149
BsrI	ACTGG	3 cut(s)	52, 253, 370
BssECI	CCNNGG	3 cut(s)	211, 359, 360
BssMI	GATC	1 cut(s)	154
BssT1I	CCWWGG	1 cut(s)	211
Bst2UI	CCWGG	1 cut(s)	361
Bst4CI	ACNGT	1 cut(s)	355
BstDEI	CTNAG	5 cut(s)	206, 218, 276, 318, 395
BstF5I	GGATG	1 cut(s)	121
BstKTI	GATC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 74
BstNI	CCWGG	1 cut(s)	361
BstNSI	RCATGY	1 cut(s)	385
BstSCI	CCNGG	1 cut(s)	359
BstSLI	GKGCMC	1 cut(s)	360
BstV1I	GCAGC	1 cut(s)	80
Bsu36I	CCTNAGG	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	391
BtsCI	GGATG	1 cut(s)	121
BtsIMutI	CAGTG	2 cut(s)	351, 377
CaiI	CAGNNNCTG	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	389
CviAII	CATG	1 cut(s)	382
CviJI	RGCY	8 cut(s)	20, 168, 210, 227, 239, 245, 391, 399
CviKI_1	RGCY	8 cut(s)	20, 168, 210, 227, 239, 245, 391, 399
DdeI	CTNAG	5 cut(s)	206, 218, 276, 318, 395
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
Eco130I	CCWWGG	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	255
Eco81I	CCTNAGG	1 cut(s)	276
Eco88I	CYCGRG	2 cut(s)	15, 84
EcoO109I	RGGNCCY	1 cut(s)	389
EcoRII	CCWGG	1 cut(s)	359
EcoT14I	CCWWGG	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	211
FaeI	CATG	1 cut(s)	385
FaqI	GGGAC	1 cut(s)	312
FatI	CATG	1 cut(s)	381
Fnu4HI	GCNGC	1 cut(s)	69
FokI	GGATG	1 cut(s)	128
Fsp4HI	GCNGC	1 cut(s)	69
FspBI	CTAG	1 cut(s)	138
GluI	GCNGC	1 cut(s)	69
GsaI	CCCAGC	1 cut(s)	172
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	391
HapII	CCGG	1 cut(s)	35
Hin1II	CATG	1 cut(s)	385
HinfI	GANTC	3 cut(s)	106, 320, 376
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	2 cut(s)	325, 396
Hpy188III	TCNNGA	2 cut(s)	86, 233
Hpy8I	GTNNAC	1 cut(s)	186
HpyAV	CCTTC	2 cut(s)	167, 289
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4V	TGCA	2 cut(s)	68, 103
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 74
HpyF3I	CTNAG	5 cut(s)	206, 218, 276, 318, 395
Hsp92II	CATG	1 cut(s)	385
Kzo9I	GATC	1 cut(s)	154
LmnI	GCTCC	2 cut(s)	232, 244
Lsp1109I	GCAGC	1 cut(s)	80
LweI	GCATC	1 cut(s)	337
MaeI	CTAG	1 cut(s)	138
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MhlI	GDGCHC	1 cut(s)	360
MlyI	GAGTC	1 cut(s)	329
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	5 cut(s)	67, 144, 240, 282, 402
MseI	TTAA	1 cut(s)	333
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	361
MvaI	CCWGG	1 cut(s)	361
MwoI	GCNNNNNNNGC	2 cut(s)	26, 74
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	1 cut(s)	385
NmuCI	GTSAC	1 cut(s)	161
NspI	RCATGY	1 cut(s)	385
PaeR7I	CTCGAG	1 cut(s)	15
PasI	CCCWGGG	1 cut(s)	360
PciI	ACATGT	1 cut(s)	381
PfeI	GAWTC	2 cut(s)	106, 376
PflMI	CCANNNNNTGG	1 cut(s)	248
PkrI	GCNGC	1 cut(s)	70
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
PscI	ACATGT	1 cut(s)	381
Psp6I	CCWGG	1 cut(s)	359
PspFI	CCCAGC	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	359
PspPI	GGNCC	1 cut(s)	389
PspXI	VCTCGAGB	1 cut(s)	15
PstNI	CAGNNNCTG	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	1 cut(s)	69
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	1 cut(s)	389
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	1 cut(s)	361
SduI	GDGCHC	1 cut(s)	360
SetI	ASST	8 cut(s)	136, 178, 229, 241, 247, 274, 319, 401
SfaNI	GCATC	1 cut(s)	337
Sfr274I	CTCGAG	1 cut(s)	15
SlaI	CTCGAG	1 cut(s)	15
SmlI	CTYRAG	1 cut(s)	15
SmoI	CTYRAG	1 cut(s)	15
SspMI	CTAG	1 cut(s)	138
StyD4I	CCNGG	1 cut(s)	359
StyI	CCWWGG	1 cut(s)	211
TaaI	ACNGT	1 cut(s)	355
TaqI	TCGA	1 cut(s)	16
TfiI	GAWTC	2 cut(s)	106, 376
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TscAI	CASTG	2 cut(s)	358, 377
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	161
TspRI	CASTG	2 cut(s)	358, 377
Van91I	CCANNNNNTGG	1 cut(s)	248
XceI	RCATGY	1 cut(s)	385
XhoI	CTCGAG	1 cut(s)	15
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.