Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000811

Physical Location & Seq

Genomic Coordinates Reverse (-)

22629442 .. 22632555

Gene Structure 3114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG230100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGGCTACGGACATCTTTATGTAGAAGTACTTCTTTTTGCAGTCATTGTTTTTCTATTCTCCCAGAAAAGTTACAAGCCCCCTAAGAAGCCTTTAACAGAGAAGGAAATAGATGATCTATGTGAGGAATGGGTTCCTGAACCTCTCATTCCTCCTATCACAGAAGATATGCAATATGAACCCCCAATGTTGGAAAGTGCTGCAGGGCCACATACAATAGTCAATGGCAAAGAAGTAGTGAACTTTGCTTCAGCAAATTATCTTGGATTGATAGGACATGAGAAGTTGCTTTCGACGCCATTACTGACTTCACCCCCAAGTGAGGGTAGCTTGACTGGCATTTTAGTGAGGAAACCTTCGTCTTCTTCAGCTCCCAGTATTGTGGATCCGAAAGTGTTACTGGAACTCTTCTCGATGTACCGTGAGTGGCAGGAGGAGAATGTCAAAAAGCTGAGCCAAAAACAGGAAGAGATAGAGAACAAGATAGAAATTGCGGACGCGTTGTCTGTTAAACTTAAGCAACTTTTTAATTATTCAGTGACAGCAATGAAGACATCCTCGCAACATTTATGTGGAGTTCATGCACTGCAGGTAGAGATTGGGGAACTTAAAGGAAGGTTGACGGAGGTTATTAGCAACTGTGATGCAGTGTGCAAGAGAATATCCGCAAAAGGACCAGAGTCTCTTCGGTCATCCGTCAAGCCATTAGTTATCTGCACCGCACACCAAGAACACCAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

247

Amino Acids

27.4

Weight (kDa)

5.7

Isoelectric Point (pI)

44.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66290 AT5G66290
fragaria_vesca	FvH4_1g12000 FvH4_2g21980
malus_domestica	MD02G1134200.v1.1 MD15G1247200.v1.1
prunus_persica	Prupe.7G166600_v2.0.a1 Prupe.7G166600_v2.0.a1
pyrus_communis	pycom02g10580
rosa_chinensis	RchiOBHm_Chr0c39g0503221 RchiOBHm_Chr1g0353231 RchiOBHm_Chr2g0099641 RchiOBHm_Chr2g0126361 RchiOBHm_Chr5g0080231
rosa_laevigata	RLG00000008117 RLG00000016900 RLG00000021865
rosa_multiflora	Rmu_sc0000394.1_g000010 Rmu_sc0000543.1_g000026 Rmu_sc0005120.1_g000016 Rmu_sc0006325.1_g000056 Rmu_sc0010438.1_g000001 Rmu_sc0035741.1_g000001 Rmu_ssc0000366.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142880 Rroxscaffold_3G00248750 Rroxscaffold_5G00378640 Rroxscaffold_5G00382790 Rroxscaffold_7G00190790
rosa_rugosa	Rorug02G0081700 Rorug02G0258300 Rorug06G0170500
rosa_samantha	Rh1CG034700 Rh1DG035400 Rh2AG131100 Rh2AG189600 Rh2AG189700 Rh2BG134500 Rh2BG230100 Rh2BG328200 Rh2CG135300 Rh2DG135900 Rh2DG196000 Rh2DG196100 Rh2DG196200 Rh3DG312100 Rh4CG305000 Rh4DG111800 Rh5AG369300 Rh5AG496200 Rh5AG496300 Rh5BG555300 Rh5CG578200 Rh5DG254100 Rh5DG254200 Rh6BG167500 Rh6BG167600 Rh6BG241100 Rh7AG282200 Rh7CG301400 Rh7CG301500 Rh7DG435700 Rh7DG435800
rosa_wichuraiana	Rw0G008970 Rw2G010150 Rw3G024850 Rw4G013560 Rw5G022800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	580
AccII	CGCG	1 cut(s)	500
AciI	CCGC	3 cut(s)	494, 666, 720
AclWI	GGATC	2 cut(s)	380, 393
AcuI	CTGAAG	2 cut(s)	234, 351
AcyI	GRCGYC	1 cut(s)	296
AfaI	GTAC	2 cut(s)	30, 419
AfiI	CCNNNNNNNGG	4 cut(s)	190, 322, 323, 463
AflII	CTTAAG	1 cut(s)	515
AflIII	ACRYGT	1 cut(s)	498
AhdI	GACNNNNNGTC	1 cut(s)	502
AluBI	AGCT	3 cut(s)	330, 371, 451
AluI	AGCT	3 cut(s)	330, 371, 451
Alw26I	GTCTC	1 cut(s)	687
AlwI	GGATC	2 cut(s)	380, 393
AoxI	GGCC	1 cut(s)	206
ApeKI	GCWGC	1 cut(s)	200
Asp700I	GAANNNNTTC	2 cut(s)	30, 132
AspS9I	GGNCC	2 cut(s)	206, 674
AsuHPI	GGTGA	1 cut(s)	303
AvaII	GGWCC	1 cut(s)	674
BamHI	GGATCC	1 cut(s)	385
BarI	GAAGNNNNNNTAC	2 cut(s)	15, 47
BbsI	GAAGAC	2 cut(s)	354, 557
BbvI	GCAGC	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	687
BfmI	CTRYAG	2 cut(s)	201, 587
BfrI	CTTAAG	1 cut(s)	515
BfuAI	ACCTGC	1 cut(s)	580
BisI	GCNGC	1 cut(s)	201
BlpI	GCTNAGC	1 cut(s)	452
BlsI	GCNGC	1 cut(s)	202
BmcAI	AGTACT	1 cut(s)	30
Bme18I	GGWCC	1 cut(s)	674
BmeRI	GACNNNNNGTC	1 cut(s)	502
BmgT120I	GGNCC	2 cut(s)	206, 674
BmiI	GGNNCC	2 cut(s)	135, 387
BmrI	ACTGGG	1 cut(s)	369
BmsI	GCATC	1 cut(s)	634
BmuI	ACTGGG	1 cut(s)	369
BoxI	GACNNNNGTC	1 cut(s)	679
BpiI	GAAGAC	2 cut(s)	354, 557
Bpu1102I	GCTNAGC	1 cut(s)	452
BsaHI	GRCGYC	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	4 cut(s)	190, 322, 323, 463
Bse1I	ACTGG	3 cut(s)	340, 375, 405
Bse3DI	GCAATG	1 cut(s)	552
BseGI	GGATG	2 cut(s)	554, 692
BseLI	CCNNNNNNNGG	4 cut(s)	190, 322, 323, 463
BseMI	GCAATG	1 cut(s)	552
BseMII	CTCAG	1 cut(s)	443
BseNI	ACTGG	3 cut(s)	340, 375, 405
BseRI	GAGGAG	1 cut(s)	449
BseXI	GCAGC	1 cut(s)	187
BsgI	GTGCAG	1 cut(s)	700
Bsh1236I	CGCG	1 cut(s)	500
BshFI	GGCC	1 cut(s)	208
BslI	CCNNNNNNNGG	4 cut(s)	190, 322, 323, 463
BsmAI	GTCTC	1 cut(s)	687
BsnI	GGCC	1 cut(s)	208
Bsp143I	GATC	2 cut(s)	115, 385
Bsp1720I	GCTNAGC	1 cut(s)	452
BspACI	CCGC	3 cut(s)	494, 666, 720
BspANI	GGCC	1 cut(s)	208
BspCNI	CTCAG	1 cut(s)	444
BspFNI	CGCG	1 cut(s)	500
BspLI	GGNNCC	2 cut(s)	135, 387
BspMAI	CTGCAG	2 cut(s)	205, 591
BspMI	ACCTGC	1 cut(s)	580
BspPI	GGATC	2 cut(s)	380, 393
BspTI	CTTAAG	1 cut(s)	515
BsrDI	GCAATG	1 cut(s)	552
BsrI	ACTGG	3 cut(s)	340, 375, 405
BssMI	GATC	2 cut(s)	115, 385
BssNI	GRCGYC	1 cut(s)	296
Bst4CI	ACNGT	2 cut(s)	422, 641
Bst6I	CTCTTC	3 cut(s)	413, 462, 690
BstACI	GRCGYC	1 cut(s)	296
BstAFI	CTTAAG	1 cut(s)	515
BstDEI	CTNAG	2 cut(s)	84, 452
BstF5I	GGATG	2 cut(s)	554, 692
BstFNI	CGCG	1 cut(s)	500
BstKTI	GATC	2 cut(s)	118, 388
BstMAI	GTCTC	1 cut(s)	687
BstMBI	GATC	2 cut(s)	115, 385
BstMWI	GCNNNNNNNGC	2 cut(s)	295, 336
BstPAI	GACNNNNGTC	1 cut(s)	679
BstSFI	CTRYAG	2 cut(s)	201, 587
BstUI	CGCG	1 cut(s)	500
BstV1I	GCAGC	1 cut(s)	187
BstV2I	GAAGAC	2 cut(s)	354, 557
BstX2I	RGATCY	1 cut(s)	385
BstXI	CCANNNNNNTGG	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	385
BsuRI	GGCC	1 cut(s)	208
BtsCI	GGATG	2 cut(s)	554, 692
BtsI	GCAGTG	2 cut(s)	584, 654
BtsIMutI	CAGTG	3 cut(s)	543, 584, 654
BveI	ACCTGC	1 cut(s)	580
Cfr13I	GGNCC	2 cut(s)	206, 674
CseI	GACGC	2 cut(s)	304, 506
Csp6I	GTAC	2 cut(s)	29, 418
CviAII	CATG	2 cut(s)	278, 581
CviJI	RGCY	9 cut(s)	6, 79, 91, 208, 330, 371, 451, 456, 703
CviKI_1	RGCY	9 cut(s)	6, 79, 91, 208, 330, 371, 451, 456, 703
CviQI	GTAC	2 cut(s)	29, 418
DdeI	CTNAG	2 cut(s)	84, 452
DpnI	GATC	2 cut(s)	117, 387
DpnII	GATC	2 cut(s)	115, 385
DriI	GACNNNNNGTC	1 cut(s)	502
Eam1104I	CTCTTC	3 cut(s)	413, 462, 690
Eam1105I	GACNNNNNGTC	1 cut(s)	502
EarI	CTCTTC	3 cut(s)	413, 462, 690
Eco47I	GGWCC	1 cut(s)	674
Eco57I	CTGAAG	2 cut(s)	234, 351
FaeI	CATG	2 cut(s)	281, 584
FaiI	YATR	8 cut(s)	21, 121, 170, 177, 213, 279, 571, 582
FalI	AAGNNNNNCTT	2 cut(s)	18, 50
FatI	CATG	2 cut(s)	277, 580
Fnu4HI	GCNGC	1 cut(s)	201
FokI	GGATG	2 cut(s)	541, 679
Fsp4HI	GCNGC	1 cut(s)	201
GluI	GCNGC	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	208
HgaI	GACGC	2 cut(s)	304, 506
Hin1I	GRCGYC	1 cut(s)	296
Hin1II	CATG	2 cut(s)	281, 584
HincII	GTYRAC	1 cut(s)	621
HindII	GTYRAC	1 cut(s)	621
HinfI	GANTC	1 cut(s)	680
HphI	GGTGA	1 cut(s)	303
Hpy166II	GTNNAC	2 cut(s)	241, 621
Hpy188I	TCNGA	1 cut(s)	390
Hpy188III	TCNNGA	3 cut(s)	137, 412, 741
Hpy8I	GTNNAC	2 cut(s)	241, 621
Hpy99I	CGWCG	1 cut(s)	298
HpyAV	CCTTC	3 cut(s)	97, 366, 609
HpyCH4III	ACNGT	2 cut(s)	422, 641
HpyCH4V	TGCA	8 cut(s)	41, 172, 203, 584, 589, 647, 654, 717
HpyF10VI	GCNNNNNNNGC	2 cut(s)	295, 336
HpyF3I	CTNAG	2 cut(s)	84, 452
Hsp92I	GRCGYC	1 cut(s)	296
Hsp92II	CATG	2 cut(s)	281, 584
Kzo9I	GATC	2 cut(s)	115, 385
LmnI	GCTCC	1 cut(s)	376
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	1 cut(s)	634
MaeIII	GTNAC	3 cut(s)	71, 396, 538
MalI	GATC	2 cut(s)	117, 387
MboI	GATC	2 cut(s)	115, 385
MboII	GAAGA	7 cut(s)	176, 354, 357, 400, 479, 562, 677
MflI	RGATCY	1 cut(s)	385
MluCI	AATT	3 cut(s)	256, 489, 529
MluI	ACGCGT	1 cut(s)	498
MlyI	GAGTC	1 cut(s)	689
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	8 cut(s)	118, 153, 162, 316, 342, 427, 568, 619
MroXI	GAANNNNTTC	2 cut(s)	30, 132
MseI	TTAA	5 cut(s)	95, 510, 516, 528, 609
MslI	CAYNNNNRTG	3 cut(s)	18, 344, 570
MspCI	CTTAAG	1 cut(s)	515
MvnI	CGCG	1 cut(s)	500
MwoI	GCNNNNNNNGC	2 cut(s)	295, 336
NdeII	GATC	2 cut(s)	115, 385
NlaIII	CATG	2 cut(s)	281, 584
NlaIV	GGNNCC	2 cut(s)	135, 387
NmuCI	GTSAC	1 cut(s)	538
PdmI	GAANNNNTTC	2 cut(s)	30, 132
PkrI	GCNGC	1 cut(s)	202
PleI	GAGTC	1 cut(s)	688
PpsI	GAGTC	1 cut(s)	688
PshAI	GACNNNNGTC	1 cut(s)	679
PspN4I	GGNNCC	2 cut(s)	135, 387
PspPI	GGNCC	2 cut(s)	206, 674
PstI	CTGCAG	2 cut(s)	205, 591
PsuI	RGATCY	1 cut(s)	385
RsaI	GTAC	2 cut(s)	30, 419
RsaNI	GTAC	2 cut(s)	29, 418
RseI	CAYNNNNRTG	3 cut(s)	18, 344, 570
SaqAI	TTAA	5 cut(s)	95, 510, 516, 528, 609
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	2 cut(s)	115, 385
Sau96I	GGNCC	2 cut(s)	206, 674
ScaI	AGTACT	1 cut(s)	30
SchI	GAGTC	1 cut(s)	689
SetI	ASST	8 cut(s)	145, 332, 358, 373, 453, 594, 620, 630
SfaNI	GCATC	1 cut(s)	634
SfcI	CTRYAG	2 cut(s)	201, 587
SinI	GGWCC	1 cut(s)	674
SmiMI	CAYNNNNRTG	3 cut(s)	18, 344, 570
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
Sse9I	AATT	3 cut(s)	256, 489, 529
SsiI	CCGC	3 cut(s)	494, 666, 720
TaaI	ACNGT	2 cut(s)	422, 641
TaqI	TCGA	2 cut(s)	293, 413
TaqII	GACCGA	1 cut(s)	678
TasI	AATT	3 cut(s)	256, 489, 529
TatI	WGTACW	1 cut(s)	28
Tru1I	TTAA	5 cut(s)	95, 510, 516, 528, 609
Tru9I	TTAA	5 cut(s)	95, 510, 516, 528, 609
TscAI	CASTG	3 cut(s)	543, 591, 654
TseFI	GTSAC	1 cut(s)	538
TseI	GCWGC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	538
TspDTI	ATGAA	3 cut(s)	192, 563, 569
TspGWI	ACGGA	3 cut(s)	24, 638, 685
TspRI	CASTG	3 cut(s)	543, 591, 654
Vha464I	CTTAAG	1 cut(s)	515
VpaK11BI	GGWCC	1 cut(s)	674
XmnI	GAANNNNTTC	2 cut(s)	30, 132
ZrmI	AGTACT	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.