Rh7DG435700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000811
Physical Location & Seq
Forward (+)
62024746 .. 62027719
2974 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG435700.1

Sequence Viewer

Length: 411 bp
ATGGGCTACGGACATCTTTATGTAGAAGTACTTCTTTTTGCAGTCATTGTTTTTCTATTCTCCCAGAAAAGTTACAAGCCCCCTAAGAAGCCTTTAACAGAGAAGGAAATAGATGATCTATGTGAGGAATGGGAAGAGATAGAGAACAAGATAGAAATTGCGGACGCGTTGTCTGTTAAACTTAAGCAACGTTTTAATTATTCAGTGACAGCAATGAAGACATCCTCTCAACATTTATGTGGAGTTCATGCACTGCAGGTAGAGATTGGGGAACTTAAAGGAAGGTTGACGGAGGTTATTAGCAACTGTGATGCAGTGTGCAAGAGAATATCCGCAGAAGGACCAGAGTCTCTTCGGTCATCTATCAAGCCATTAGTTATCTGCACTGCACACCAAGAACACCAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.33

Weight (kDa)

5.95

Isoelectric Point (pI)

48.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 247
AccII CGCG 1 cut(s) 167
AciI CCGC 2 cut(s) 161, 333
AclI AACGTT 1 cut(s) 190
AfaI GTAC 1 cut(s) 30
AflII CTTAAG 1 cut(s) 182
AflIII ACRYGT 1 cut(s) 165
AhdI GACNNNNNGTC 1 cut(s) 169
Alw26I GTCTC 1 cut(s) 354
Asp700I GAANNNNTTC 1 cut(s) 30
AspS9I GGNCC 1 cut(s) 341
AvaII GGWCC 1 cut(s) 341
BarI GAAGNNNNNNTAC 2 cut(s) 15, 47
BbsI GAAGAC 1 cut(s) 224
BcoDI GTCTC 1 cut(s) 354
BfmI CTRYAG 1 cut(s) 254
BfrI CTTAAG 1 cut(s) 182
BfuAI ACCTGC 1 cut(s) 247
BmcAI AGTACT 1 cut(s) 30
Bme18I GGWCC 1 cut(s) 341
BmeRI GACNNNNNGTC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 341
BmsI GCATC 1 cut(s) 301
BoxI GACNNNNGTC 1 cut(s) 346
BpiI GAAGAC 1 cut(s) 224
Bse3DI GCAATG 1 cut(s) 219
BseGI GGATG 1 cut(s) 221
BseMI GCAATG 1 cut(s) 219
BsgI GTGCAG 2 cut(s) 367, 372
Bsh1236I CGCG 1 cut(s) 167
BsmAI GTCTC 1 cut(s) 354
Bsp143I GATC 1 cut(s) 115
BspACI CCGC 2 cut(s) 161, 333
BspFNI CGCG 1 cut(s) 167
BspMAI CTGCAG 1 cut(s) 258
BspMI ACCTGC 1 cut(s) 247
BspTI CTTAAG 1 cut(s) 182
BsrDI GCAATG 1 cut(s) 219
BssMI GATC 1 cut(s) 115
Bst4CI ACNGT 1 cut(s) 308
Bst6I CTCTTC 2 cut(s) 129, 357
BstAFI CTTAAG 1 cut(s) 182
BstDEI CTNAG 1 cut(s) 84
BstF5I GGATG 1 cut(s) 221
BstFNI CGCG 1 cut(s) 167
BstKTI GATC 1 cut(s) 118
BstMAI GTCTC 1 cut(s) 354
BstMBI GATC 1 cut(s) 115
BstPAI GACNNNNGTC 1 cut(s) 346
BstSFI CTRYAG 1 cut(s) 254
BstUI CGCG 1 cut(s) 167
BstV2I GAAGAC 1 cut(s) 224
BtsCI GGATG 1 cut(s) 221
BtsI GCAGTG 3 cut(s) 251, 321, 384
BtsIMutI CAGTG 4 cut(s) 210, 251, 321, 384
BveI ACCTGC 1 cut(s) 247
Cfr13I GGNCC 1 cut(s) 341
CseI GACGC 1 cut(s) 173
Csp6I GTAC 1 cut(s) 29
CviAII CATG 1 cut(s) 248
CviJI RGCY 4 cut(s) 6, 79, 91, 370
CviKI_1 RGCY 4 cut(s) 6, 79, 91, 370
CviQI GTAC 1 cut(s) 29
DdeI CTNAG 1 cut(s) 84
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
DriI GACNNNNNGTC 1 cut(s) 169
Eam1104I CTCTTC 2 cut(s) 129, 357
Eam1105I GACNNNNNGTC 1 cut(s) 169
EarI CTCTTC 2 cut(s) 129, 357
Eco47I GGWCC 1 cut(s) 341
FaeI CATG 1 cut(s) 251
FaiI YATR 4 cut(s) 21, 121, 238, 249
FalI AAGNNNNNCTT 2 cut(s) 18, 50
FatI CATG 1 cut(s) 247
FokI GGATG 1 cut(s) 208
HgaI GACGC 1 cut(s) 173
Hin1II CATG 1 cut(s) 251
HincII GTYRAC 1 cut(s) 288
HindII GTYRAC 1 cut(s) 288
HinfI GANTC 1 cut(s) 347
Hpy166II GTNNAC 1 cut(s) 288
Hpy188III TCNNGA 1 cut(s) 408
Hpy8I GTNNAC 1 cut(s) 288
HpyAV CCTTC 3 cut(s) 97, 276, 332
HpyCH4III ACNGT 1 cut(s) 308
HpyCH4IV ACGT 1 cut(s) 190
HpyCH4V TGCA 7 cut(s) 41, 251, 256, 314, 321, 384, 389
HpyF3I CTNAG 1 cut(s) 84
HpySE526I ACGT 1 cut(s) 190
Hsp92II CATG 1 cut(s) 251
Kzo9I GATC 1 cut(s) 115
LpnPI CCDG 3 cut(s) 77, 242, 357
LweI GCATC 1 cut(s) 301
MaeII ACGT 1 cut(s) 190
MaeIII GTNAC 2 cut(s) 71, 205
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 3 cut(s) 146, 229, 344
MluCI AATT 2 cut(s) 156, 196
MluI ACGCGT 1 cut(s) 165
MlyI GAGTC 1 cut(s) 356
MnlI CCTC 3 cut(s) 118, 235, 286
MroXI GAANNNNTTC 1 cut(s) 30
MseI TTAA 5 cut(s) 95, 177, 183, 195, 276
MslI CAYNNNNRTG 2 cut(s) 18, 237
MspCI CTTAAG 1 cut(s) 182
MvnI CGCG 1 cut(s) 167
NdeII GATC 1 cut(s) 115
NlaIII CATG 1 cut(s) 251
NmuCI GTSAC 1 cut(s) 205
PdmI GAANNNNTTC 1 cut(s) 30
PleI GAGTC 1 cut(s) 355
PpsI GAGTC 1 cut(s) 355
PshAI GACNNNNGTC 1 cut(s) 346
Psp1406I AACGTT 1 cut(s) 190
PspPI GGNCC 1 cut(s) 341
PstI CTGCAG 1 cut(s) 258
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
RseI CAYNNNNRTG 2 cut(s) 18, 237
SaqAI TTAA 5 cut(s) 95, 177, 183, 195, 276
Sau3AI GATC 1 cut(s) 115
Sau96I GGNCC 1 cut(s) 341
ScaI AGTACT 1 cut(s) 30
SchI GAGTC 1 cut(s) 356
SetI ASST 4 cut(s) 193, 261, 287, 297
SfaNI GCATC 1 cut(s) 301
SfcI CTRYAG 1 cut(s) 254
SinI GGWCC 1 cut(s) 341
SmiMI CAYNNNNRTG 2 cut(s) 18, 237
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 2 cut(s) 156, 196
SsiI CCGC 2 cut(s) 161, 333
TaaI ACNGT 1 cut(s) 308
TaiI ACGT 1 cut(s) 193
TaqII GACCGA 1 cut(s) 345
TasI AATT 2 cut(s) 156, 196
TatI WGTACW 1 cut(s) 28
Tru1I TTAA 5 cut(s) 95, 177, 183, 195, 276
Tru9I TTAA 5 cut(s) 95, 177, 183, 195, 276
TscAI CASTG 4 cut(s) 210, 258, 321, 391
TseFI GTSAC 1 cut(s) 205
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 2 cut(s) 230, 236
TspGWI ACGGA 2 cut(s) 24, 305
TspRI CASTG 4 cut(s) 210, 258, 321, 391
Vha464I CTTAAG 1 cut(s) 182
VpaK11BI GGWCC 1 cut(s) 341
XmnI GAANNNNTTC 1 cut(s) 30
ZrmI AGTACT 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.