RchiOBHm_Chr2g0126361

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000811
Physical Location & Seq
Forward (+)
40732777 .. 40734219
1443 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49835

Sequence Viewer

Length: 213 bp
ATGTACCTGACAGCAATGAAGACATCCTCGCAACATTTATGTGGAGCTCATGCACTGCAGGTAGAGATTGGGGAACTTAAAGGAAGGTTGACGGAGGTTATTAGCAACTGTGATGCAGTTTGCAAGAGAATATCCGCAGAAGGACCAGAGTCTCTTCGGTCATCTGTCAAGCCATTAGTTATCTGCACCGCACACCAAGAACACCAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.59

Weight (kDa)

6.88

Isoelectric Point (pI)

55.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 49
AciI CCGC 2 cut(s) 135, 189
AfaI GTAC 1 cut(s) 5
AluBI AGCT 1 cut(s) 47
AluI AGCT 1 cut(s) 47
Alw21I GWGCWC 1 cut(s) 49
Alw26I GTCTC 1 cut(s) 156
AspS9I GGNCC 1 cut(s) 143
AvaII GGWCC 1 cut(s) 143
BanII GRGCYC 1 cut(s) 49
BbsI GAAGAC 1 cut(s) 26
Bbv12I GWGCWC 1 cut(s) 49
BcoDI GTCTC 1 cut(s) 156
BfmI CTRYAG 1 cut(s) 56
BfuAI ACCTGC 1 cut(s) 49
Bme18I GGWCC 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 143
BmsI GCATC 1 cut(s) 103
BoxI GACNNNNGTC 1 cut(s) 148
BpiI GAAGAC 1 cut(s) 26
Bse3DI GCAATG 1 cut(s) 21
BseGI GGATG 1 cut(s) 23
BseMI GCAATG 1 cut(s) 21
BsgI GTGCAG 1 cut(s) 169
BsiHKAI GWGCWC 1 cut(s) 49
BsmAI GTCTC 1 cut(s) 156
Bsp1286I GDGCHC 1 cut(s) 49
BspACI CCGC 2 cut(s) 135, 189
BspMAI CTGCAG 1 cut(s) 60
BspMI ACCTGC 1 cut(s) 49
BsrDI GCAATG 1 cut(s) 21
Bst4CI ACNGT 1 cut(s) 110
Bst6I CTCTTC 1 cut(s) 159
BstF5I GGATG 1 cut(s) 23
BstMAI GTCTC 1 cut(s) 156
BstPAI GACNNNNGTC 1 cut(s) 148
BstSFI CTRYAG 1 cut(s) 56
BstV2I GAAGAC 1 cut(s) 26
BtsCI GGATG 1 cut(s) 23
BtsI GCAGTG 1 cut(s) 53
BtsIMutI CAGTG 1 cut(s) 53
BveI ACCTGC 1 cut(s) 49
Cfr13I GGNCC 1 cut(s) 143
Csp6I GTAC 1 cut(s) 4
CviAII CATG 1 cut(s) 50
CviJI RGCY 2 cut(s) 47, 172
CviKI_1 RGCY 2 cut(s) 47, 172
CviQI GTAC 1 cut(s) 4
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Ecl136II GAGCTC 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 49
Eco47I GGWCC 1 cut(s) 143
Eco53kI GAGCTC 1 cut(s) 47
EcoICRI GAGCTC 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 49
FaeI CATG 1 cut(s) 53
FaiI YATR 2 cut(s) 40, 51
FatI CATG 1 cut(s) 49
FokI GGATG 1 cut(s) 10
FriOI GRGCYC 1 cut(s) 49
Hin1II CATG 1 cut(s) 53
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HinfI GANTC 1 cut(s) 149
Hpy166II GTNNAC 1 cut(s) 90
Hpy188III TCNNGA 1 cut(s) 210
Hpy8I GTNNAC 1 cut(s) 90
HpyAV CCTTC 2 cut(s) 78, 134
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4V TGCA 5 cut(s) 53, 58, 116, 123, 186
Hsp92II CATG 1 cut(s) 53
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 3 cut(s) 20, 44, 159
LweI GCATC 1 cut(s) 103
MboII GAAGA 2 cut(s) 31, 146
MhlI GDGCHC 1 cut(s) 49
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 2 cut(s) 37, 88
MseI TTAA 1 cut(s) 78
MslI CAYNNNNRTG 1 cut(s) 39
NlaIII CATG 1 cut(s) 53
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
PshAI GACNNNNGTC 1 cut(s) 148
Psp124BI GAGCTC 1 cut(s) 49
PspPI GGNCC 1 cut(s) 143
PstI CTGCAG 1 cut(s) 60
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 39
SacI GAGCTC 1 cut(s) 49
SaqAI TTAA 1 cut(s) 78
Sau96I GGNCC 1 cut(s) 143
SchI GAGTC 1 cut(s) 158
SduI GDGCHC 1 cut(s) 49
SetI ASST 5 cut(s) 9, 49, 63, 89, 99
SfaNI GCATC 1 cut(s) 103
SfcI CTRYAG 1 cut(s) 56
SgeI CNNG 8 cut(s) 19, 40, 62, 71, 136, 158, 181, 209
SinI GGWCC 1 cut(s) 143
SmiMI CAYNNNNRTG 1 cut(s) 39
SsiI CCGC 2 cut(s) 135, 189
SstI GAGCTC 1 cut(s) 49
TaaI ACNGT 1 cut(s) 110
TaqII GACCGA 1 cut(s) 147
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TscAI CASTG 1 cut(s) 60
TspDTI ATGAA 1 cut(s) 32
TspGWI ACGGA 1 cut(s) 107
TspRI CASTG 1 cut(s) 60
VpaK11BI GGWCC 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.