Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000811

Physical Location & Seq

Genomic Coordinates Reverse (-)

29610292 .. 29611495

Gene Structure 1204 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG254200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGCTAGAAGCTCTCCAGGACATTGAAATTGCTTCCAGATTAGTCGGTTTTGATGCTGATAGTGATGTCTCTTTGGATGAGAAGTATAAGAAGCTCCGGTGTTGTATGAATCCACTACTCCACGATAGTGAAGATTATTGGTTGATTGAAAAGTATCTTCTTACTACTCATGCCCCTACACATACGGATTGGAGTCTTGAACTTGAAGAAGTTTTTTCACTTGAAAGGGAAGGGGAATTGGATAAATACGCTCCTTGTGATCATCTGAATATTTCTGTACCGGCATCAGACTCGATCCATGCTACTAGTTCTTTTGCACAACAAAGACAAGTGAAAGGACTTGCAGGGCTTTGGTTCCAGTTTTCTGTGATGGGTAATACTCGAGCCATTGGTGCGTTTCTGGTGCTTGTGTTAGTCCAGTTCTTTGTTATTGCAGCAGAGGCAAACACTCAGGAATATGGTTATATGCAGATTCTTATGGATGAGTGGAATATAAAACCTCCTAGTTGGGTGAGTGCCGATCCTTGTGACGGCTGGGAAGGTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0003950 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006464 GO:0006471 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016070 GO:0016740 GO:0016757 GO:0016763 GO:0016874 GO:0016886 GO:0019538 GO:0022616 GO:0033554 GO:0033993 GO:0034641 GO:0034645 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0071704 GO:0090304 GO:0097305 GO:0140097 GO:1901360 GO:1901564 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 map03410 map04210 map04212 map04214 map04217

Pfam Domains

Protein Families

BRCT PADR1 PARP PARP_reg WGR zf-PARP

Protein Analysis

182

Amino Acids

20.65

Weight (kDa)

4.42

Isoelectric Point (pI)

43.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PARP	PF00644	43 - 88	5.3e-07	Poly(ADP-ribose) polymerase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66290 AT5G66290
fragaria_vesca	FvH4_1g12000 FvH4_2g21980
malus_domestica	MD02G1134200.v1.1 MD15G1247200.v1.1
prunus_persica	Prupe.7G166600_v2.0.a1 Prupe.7G166600_v2.0.a1
pyrus_communis	pycom02g10580
rosa_chinensis	RchiOBHm_Chr0c39g0503221 RchiOBHm_Chr1g0353231 RchiOBHm_Chr2g0099641 RchiOBHm_Chr2g0126361 RchiOBHm_Chr5g0080231
rosa_laevigata	RLG00000008117 RLG00000016900 RLG00000021865
rosa_multiflora	Rmu_sc0000394.1_g000010 Rmu_sc0000543.1_g000026 Rmu_sc0005120.1_g000016 Rmu_sc0006325.1_g000056 Rmu_sc0010438.1_g000001 Rmu_sc0035741.1_g000001 Rmu_ssc0000366.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142880 Rroxscaffold_3G00248750 Rroxscaffold_5G00378640 Rroxscaffold_5G00382790 Rroxscaffold_7G00190790
rosa_rugosa	Rorug02G0081700 Rorug02G0258300 Rorug06G0170500
rosa_samantha	Rh1CG034700 Rh1DG035400 Rh2AG131100 Rh2AG189600 Rh2AG189700 Rh2BG134500 Rh2BG230100 Rh2BG328200 Rh2CG135300 Rh2DG135900 Rh2DG196000 Rh2DG196100 Rh2DG196200 Rh3DG312100 Rh4CG305000 Rh4DG111800 Rh5AG369300 Rh5AG496200 Rh5AG496300 Rh5BG555300 Rh5CG578200 Rh5DG254100 Rh5DG254200 Rh6BG167500 Rh6BG167600 Rh6BG241100 Rh7AG282200 Rh7CG301400 Rh7CG301500 Rh7DG435700 Rh7DG435800
rosa_wichuraiana	Rw0G008970 Rw2G010150 Rw3G024850 Rw4G013560 Rw5G022800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	289, 515
AfaI	GTAC	1 cut(s)	279
AfiI	CCNNNNNNNGG	1 cut(s)	530
AgsI	TTSAA	5 cut(s)	26, 149, 200, 206, 224
AhlI	ACTAGT	1 cut(s)	305
AjnI	CCWGG	1 cut(s)	15
AleI	CACNNNNGTG	1 cut(s)	126
AluBI	AGCT	2 cut(s)	11, 94
AluI	AGCT	2 cut(s)	11, 94
Alw26I	GTCTC	1 cut(s)	73
AlwI	GGATC	2 cut(s)	289, 515
Ama87I	CYCGRG	1 cut(s)	381
ApeKI	GCWGC	1 cut(s)	434
AsuHPI	GGTGA	1 cut(s)	523
AvaI	CYCGRG	1 cut(s)	381
BbvI	GCAGC	1 cut(s)	446
BccI	CCATC	1 cut(s)	364
BceAI	ACGGC	1 cut(s)	547
BcgI	CGANNNNNNTGC	2 cut(s)	273, 307
BciT130I	CCWGG	1 cut(s)	17
BclI	TGATCA	1 cut(s)	259
BcoDI	GTCTC	1 cut(s)	73
BcuI	ACTAGT	1 cut(s)	305
BfaI	CTAG	3 cut(s)	5, 306, 504
BisI	GCNGC	1 cut(s)	435
BlsI	GCNGC	1 cut(s)	436
Bme1390I	CCNGG	1 cut(s)	17
BmeT110I	CYCGRG	1 cut(s)	381
BmiI	GGNNCC	1 cut(s)	356
BmrFI	CCNGG	1 cut(s)	17
BmsI	GCATC	2 cut(s)	43, 293
BsaWI	WCCGGW	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	1 cut(s)	530
Bse118I	RCCGGY	1 cut(s)	280
Bse1I	ACTGG	2 cut(s)	358, 418
BseBI	CCWGG	1 cut(s)	17
BseGI	GGATG	2 cut(s)	82, 487
BseLI	CCNNNNNNNGG	1 cut(s)	530
BseMII	CTCAG	1 cut(s)	464
BseNI	ACTGG	2 cut(s)	358, 418
BseXI	GCAGC	1 cut(s)	446
BseYI	CCCAGC	1 cut(s)	534
BsiHKCI	CYCGRG	1 cut(s)	381
BsiSI	CCGG	2 cut(s)	97, 281
BslI	CCNNNNNNNGG	1 cut(s)	530
BsmAI	GTCTC	1 cut(s)	73
BsoBI	CYCGRG	1 cut(s)	381
Bsp143I	GATC	3 cut(s)	259, 294, 520
BspCNI	CTCAG	1 cut(s)	463
BspLI	GGNNCC	1 cut(s)	356
BspPI	GGATC	2 cut(s)	289, 515
BsrFI	RCCGGY	1 cut(s)	280
BsrI	ACTGG	2 cut(s)	358, 418
BssAI	RCCGGY	1 cut(s)	280
BssMI	GATC	3 cut(s)	259, 294, 520
Bst2UI	CCWGG	1 cut(s)	17
BstDEI	CTNAG	1 cut(s)	450
BstF5I	GGATG	2 cut(s)	82, 487
BstKTI	GATC	3 cut(s)	262, 297, 523
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	3 cut(s)	259, 294, 520
BstMWI	GCNNNNNNNGC	2 cut(s)	392, 440
BstNI	CCWGG	1 cut(s)	17
BstSCI	CCNGG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	446
BtsCI	GGATG	2 cut(s)	82, 487
Cfr10I	RCCGGY	1 cut(s)	280
Csp6I	GTAC	1 cut(s)	278
CviAII	CATG	2 cut(s)	170, 299
CviJI	RGCY	5 cut(s)	11, 94, 349, 386, 534
CviKI_1	RGCY	5 cut(s)	11, 94, 349, 386, 534
CviQI	GTAC	1 cut(s)	278
DdeI	CTNAG	1 cut(s)	450
DpnI	GATC	3 cut(s)	261, 296, 522
DpnII	GATC	3 cut(s)	259, 294, 520
Eco88I	CYCGRG	1 cut(s)	381
EcoRII	CCWGG	1 cut(s)	15
FaeI	CATG	2 cut(s)	173, 302
FatI	CATG	2 cut(s)	169, 298
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	1 cut(s)	435
FokI	GGATG	2 cut(s)	89, 494
Fsp4HI	GCNGC	1 cut(s)	435
FspBI	CTAG	3 cut(s)	5, 306, 504
GluI	GCNGC	1 cut(s)	435
GsaI	CCCAGC	1 cut(s)	538
HapII	CCGG	2 cut(s)	97, 281
Hin1II	CATG	2 cut(s)	173, 302
HinfI	GANTC	4 cut(s)	109, 193, 290, 472
HpaII	CCGG	2 cut(s)	97, 281
HphI	GGTGA	1 cut(s)	523
Hpy188I	TCNGA	2 cut(s)	267, 289
Hpy188III	TCNNGA	3 cut(s)	36, 197, 452
HpyAV	CCTTC	2 cut(s)	224, 533
HpyCH4V	TGCA	4 cut(s)	317, 344, 434, 469
HpyF10VI	GCNNNNNNNGC	2 cut(s)	392, 440
HpyF3I	CTNAG	1 cut(s)	450
Hsp92II	CATG	2 cut(s)	173, 302
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	3 cut(s)	259, 294, 520
LmnI	GCTCC	2 cut(s)	99, 256
Lsp1109I	GCAGC	1 cut(s)	446
LweI	GCATC	2 cut(s)	43, 293
MaeI	CTAG	3 cut(s)	5, 306, 504
MaeIII	GTNAC	1 cut(s)	527
MalI	GATC	3 cut(s)	261, 296, 522
MboI	GATC	3 cut(s)	259, 294, 520
MboII	GAAGA	3 cut(s)	143, 149, 218
MluCI	AATT	2 cut(s)	27, 236
MlyI	GAGTC	2 cut(s)	202, 284
MnlI	CCTC	2 cut(s)	433, 510
MslI	CAYNNNNRTG	1 cut(s)	126
MspI	CCGG	2 cut(s)	97, 281
MspR9I	CCNGG	1 cut(s)	17
MvaI	CCWGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	2 cut(s)	392, 440
NdeII	GATC	3 cut(s)	259, 294, 520
NlaIII	CATG	2 cut(s)	173, 302
NlaIV	GGNNCC	1 cut(s)	356
NmuCI	GTSAC	1 cut(s)	527
OliI	CACNNNNGTG	1 cut(s)	126
PaeR7I	CTCGAG	1 cut(s)	381
PfeI	GAWTC	2 cut(s)	109, 472
PfoI	TCCNGGA	1 cut(s)	15
PkrI	GCNGC	1 cut(s)	436
PleI	GAGTC	2 cut(s)	201, 284
PpsI	GAGTC	2 cut(s)	201, 284
Psp6I	CCWGG	1 cut(s)	15
PspFI	CCCAGC	1 cut(s)	534
PspGI	CCWGG	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	356
PspXI	VCTCGAGB	1 cut(s)	381
RsaI	GTAC	1 cut(s)	279
RsaNI	GTAC	1 cut(s)	278
RseI	CAYNNNNRTG	1 cut(s)	126
SatI	GCNGC	1 cut(s)	435
Sau3AI	GATC	3 cut(s)	259, 294, 520
SchI	GAGTC	2 cut(s)	202, 284
ScrFI	CCNGG	1 cut(s)	17
SetI	ASST	4 cut(s)	13, 96, 502, 544
SfaNI	GCATC	2 cut(s)	43, 293
Sfr274I	CTCGAG	1 cut(s)	381
SlaI	CTCGAG	1 cut(s)	381
SmiMI	CAYNNNNRTG	1 cut(s)	126
SmlI	CTYRAG	1 cut(s)	381
SmoI	CTYRAG	1 cut(s)	381
SpeI	ACTAGT	1 cut(s)	305
Sse9I	AATT	2 cut(s)	27, 236
SspI	AATATT	1 cut(s)	271
SspMI	CTAG	3 cut(s)	5, 306, 504
StyD4I	CCNGG	1 cut(s)	15
TaqI	TCGA	2 cut(s)	293, 382
TasI	AATT	2 cut(s)	27, 236
TfiI	GAWTC	2 cut(s)	109, 472
TseFI	GTSAC	1 cut(s)	527
TseI	GCWGC	1 cut(s)	434
Tsp45I	GTSAC	1 cut(s)	527
TspDTI	ATGAA	1 cut(s)	122
TspGWI	ACGGA	1 cut(s)	200
XhoI	CTCGAG	1 cut(s)	381
XspI	CTAG	3 cut(s)	5, 306, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.