Rw2G010150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000811
Physical Location & Seq
Reverse (-)
10276353 .. 10278561
2209 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G010150.1

Sequence Viewer

Length: 672 bp
ATGGGTGCCACAGAATCCTCACTCTCGAGCTCACAGGTAGTTCAGCTAGAAACGCCTAGATCAACCCCAATTTTTTGCTTCCTTGATTTAATAGATGGTATAAAATTCTCATTACGCTTGCAGAGGTGGCCGGGCGATGAAATCACGACCGTGTCTGAGCGATCGGAGGTGGCCGATCCTATATTAGAGAGGCTCAGGTCCCTAAGACTTTCGACGCCATTACTGACTTCACCCCCAAGTGAGGGTAGCTTGACTGACATTTTAGTGAGGAAACCTTCGTCTTCTTCAGCTCCCAGTATTGTGGATCCGAAAGTGTTACTGGAACTCTTCTCGATGTACCGTGAGTGGCAGGAGGAGAATGTCAAAAGGCTGAGCCAAAAACAGGAAGAGATAGAGAACAAGATAGAAATTGCGGACGCGTTGTCTGTTAAACTTAAGCAACGCTTTAATTATTCAGTGACAGCAATGAAGACATCCTCGCAACATTTATGTGGAGTTCATGCACTGCAGGTAGAGATTGGGGAACTTAAAGGAAGGTTGACGGAGGTTATTAGCAACTGTGATGCAGTGTGCAAGAGAATATCCGCAGAAGGACCAGAGTCTCTTCGGTCATCTGTCAAGCCTTTGGTTATCTTGCACTGCACACCAAGAACACCAATCTGCCTCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

24.8

Weight (kDa)

6.35

Isoelectric Point (pI)

64.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 499
AccB1I GGYRCC 1 cut(s) 5
AccII CGCG 1 cut(s) 419
AciI CCGC 2 cut(s) 413, 585
AclWI GGATC 3 cut(s) 170, 299, 312
AcoI YGGCCR 2 cut(s) 128, 171
AcsI RAATTY 1 cut(s) 104
AcuI CTGAAG 1 cut(s) 270
AcyI GRCGYC 1 cut(s) 215
AfaI GTAC 1 cut(s) 338
AfiI CCNNNNNNNGG 3 cut(s) 241, 242, 382
AflII CTTAAG 1 cut(s) 434
AflIII ACRYGT 1 cut(s) 417
AhdI GACNNNNNGTC 1 cut(s) 421
AleI CACNNNNGTG 1 cut(s) 149
AluBI AGCT 4 cut(s) 30, 46, 249, 290
AluI AGCT 4 cut(s) 30, 46, 249, 290
Alw21I GWGCWC 1 cut(s) 32
Alw26I GTCTC 1 cut(s) 606
AlwI GGATC 3 cut(s) 170, 299, 312
Ama87I CYCGRG 1 cut(s) 25
AoxI GGCC 2 cut(s) 128, 171
ApoI RAATTY 1 cut(s) 104
AspS9I GGNCC 2 cut(s) 198, 593
AsuC2I CCSGG 1 cut(s) 132
AsuHPI GGTGA 1 cut(s) 222
AvaI CYCGRG 1 cut(s) 25
AvaII GGWCC 2 cut(s) 198, 593
BamHI GGATCC 1 cut(s) 304
BanI GGYRCC 1 cut(s) 5
BanII GRGCYC 1 cut(s) 32
BbsI GAAGAC 2 cut(s) 273, 476
Bbv12I GWGCWC 1 cut(s) 32
BccI CCATC 1 cut(s) 89
BcnI CCSGG 1 cut(s) 132
BcoDI GTCTC 1 cut(s) 606
BfaI CTAG 2 cut(s) 47, 57
BfmI CTRYAG 1 cut(s) 506
BfrI CTTAAG 1 cut(s) 434
BfuAI ACCTGC 1 cut(s) 499
BlpI GCTNAGC 1 cut(s) 371
Bme1390I CCNGG 1 cut(s) 132
Bme18I GGWCC 2 cut(s) 198, 593
BmeRI GACNNNNNGTC 1 cut(s) 421
BmeT110I CYCGRG 1 cut(s) 25
BmgT120I GGNCC 2 cut(s) 198, 593
BmiI GGNNCC 3 cut(s) 7, 200, 306
BmrFI CCNGG 1 cut(s) 132
BmrI ACTGGG 1 cut(s) 288
BmsI GCATC 1 cut(s) 553
BmuI ACTGGG 1 cut(s) 288
BoxI GACNNNNGTC 1 cut(s) 598
BpiI GAAGAC 2 cut(s) 273, 476
Bpu10I CCTNAGC 1 cut(s) 194
Bpu1102I GCTNAGC 1 cut(s) 371
BpuMI CCSGG 1 cut(s) 132
BsaHI GRCGYC 1 cut(s) 215
Bsc4I CCNNNNNNNGG 3 cut(s) 241, 242, 382
Bse1I ACTGG 2 cut(s) 294, 324
Bse3DI GCAATG 1 cut(s) 471
BseGI GGATG 1 cut(s) 473
BseLI CCNNNNNNNGG 3 cut(s) 241, 242, 382
BseMI GCAATG 1 cut(s) 471
BseMII CTCAG 3 cut(s) 147, 208, 362
BseNI ACTGG 2 cut(s) 294, 324
BseRI GAGGAG 1 cut(s) 368
BsgI GTGCAG 1 cut(s) 625
Bsh1236I CGCG 1 cut(s) 419
Bsh1285I CGRYCG 2 cut(s) 150, 164
BshFI GGCC 2 cut(s) 130, 173
BshNI GGYRCC 1 cut(s) 5
BsiEI CGRYCG 2 cut(s) 150, 164
BsiHKAI GWGCWC 1 cut(s) 32
BsiHKCI CYCGRG 1 cut(s) 25
BsiSI CCGG 1 cut(s) 131
BslFI GGGAC 1 cut(s) 184
BslI CCNNNNNNNGG 3 cut(s) 241, 242, 382
BsmAI GTCTC 1 cut(s) 606
BsmFI GGGAC 1 cut(s) 184
BsnI GGCC 2 cut(s) 130, 173
BsoBI CYCGRG 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 32
Bsp143I GATC 4 cut(s) 59, 161, 175, 304
Bsp1720I GCTNAGC 1 cut(s) 371
BspACI CCGC 2 cut(s) 413, 585
BspANI GGCC 2 cut(s) 130, 173
BspCNI CTCAG 3 cut(s) 148, 207, 363
BspFNI CGCG 1 cut(s) 419
BspLI GGNNCC 3 cut(s) 7, 200, 306
BspMAI CTGCAG 1 cut(s) 510
BspMI ACCTGC 1 cut(s) 499
BspPI GGATC 3 cut(s) 170, 299, 312
BspT107I GGYRCC 1 cut(s) 5
BspTI CTTAAG 1 cut(s) 434
BsrDI GCAATG 1 cut(s) 471
BsrI ACTGG 2 cut(s) 294, 324
BssMI GATC 4 cut(s) 59, 161, 175, 304
BssNI GRCGYC 1 cut(s) 215
Bst4CI ACNGT 3 cut(s) 151, 341, 560
Bst6I CTCTTC 3 cut(s) 332, 381, 609
BstACI GRCGYC 1 cut(s) 215
BstAFI CTTAAG 1 cut(s) 434
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 4 cut(s) 156, 194, 203, 371
BstF5I GGATG 1 cut(s) 473
BstFNI CGCG 1 cut(s) 419
BstKTI GATC 4 cut(s) 62, 164, 178, 307
BstMAI GTCTC 1 cut(s) 606
BstMBI GATC 4 cut(s) 59, 161, 175, 304
BstMCI CGRYCG 2 cut(s) 150, 164
BstMWI GCNNNNNNNGC 2 cut(s) 52, 127
BstPAI GACNNNNGTC 1 cut(s) 598
BstSCI CCNGG 1 cut(s) 130
BstSFI CTRYAG 1 cut(s) 506
BstUI CGCG 1 cut(s) 419
BstV2I GAAGAC 2 cut(s) 273, 476
BstX2I RGATCY 1 cut(s) 304
BstXI CCANNNNNNTGG 1 cut(s) 301
BstYI RGATCY 1 cut(s) 304
BsuRI GGCC 2 cut(s) 130, 173
BtgZI GCGATG 1 cut(s) 150
BtsCI GGATG 1 cut(s) 473
BtsI GCAGTG 3 cut(s) 503, 573, 637
BtsIMutI CAGTG 4 cut(s) 462, 503, 573, 637
BveI ACCTGC 1 cut(s) 499
Cac8I GCNNGC 1 cut(s) 119
Cfr13I GGNCC 2 cut(s) 198, 593
CseI GACGC 2 cut(s) 223, 425
Csp6I GTAC 1 cut(s) 337
CviAII CATG 1 cut(s) 500
CviQI GTAC 1 cut(s) 337
DdeI CTNAG 4 cut(s) 156, 194, 203, 371
DpnI GATC 4 cut(s) 61, 163, 177, 306
DpnII GATC 4 cut(s) 59, 161, 175, 304
DriI GACNNNNNGTC 1 cut(s) 421
EaeI YGGCCR 2 cut(s) 128, 171
Eam1104I CTCTTC 3 cut(s) 332, 381, 609
Eam1105I GACNNNNNGTC 1 cut(s) 421
EarI CTCTTC 3 cut(s) 332, 381, 609
Ecl136II GAGCTC 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 32
Eco47I GGWCC 2 cut(s) 198, 593
Eco53kI GAGCTC 1 cut(s) 30
Eco57I CTGAAG 1 cut(s) 270
Eco88I CYCGRG 1 cut(s) 25
EcoICRI GAGCTC 1 cut(s) 30
EcoO109I RGGNCCY 1 cut(s) 198
EcoT38I GRGCYC 1 cut(s) 32
FaeI CATG 1 cut(s) 503
FaiI YATR 4 cut(s) 101, 182, 490, 501
FalI AAGNNNNNCTT 2 cut(s) 428, 460
FaqI GGGAC 1 cut(s) 184
FatI CATG 1 cut(s) 499
FokI GGATG 1 cut(s) 460
FriOI GRGCYC 1 cut(s) 32
FspBI CTAG 2 cut(s) 47, 57
HaeIII GGCC 2 cut(s) 130, 173
HapII CCGG 1 cut(s) 131
HgaI GACGC 2 cut(s) 223, 425
Hin1I GRCGYC 1 cut(s) 215
Hin1II CATG 1 cut(s) 503
HincII GTYRAC 1 cut(s) 540
HindII GTYRAC 1 cut(s) 540
HinfI GANTC 2 cut(s) 14, 599
HpaII CCGG 1 cut(s) 131
HphI GGTGA 1 cut(s) 222
Hpy166II GTNNAC 1 cut(s) 540
Hpy188I TCNGA 4 cut(s) 157, 166, 309, 671
Hpy188III TCNNGA 3 cut(s) 25, 145, 331
Hpy8I GTNNAC 1 cut(s) 540
Hpy99I CGWCG 1 cut(s) 217
HpyAV CCTTC 3 cut(s) 285, 528, 584
HpyCH4III ACNGT 3 cut(s) 151, 341, 560
HpyCH4V TGCA 7 cut(s) 121, 503, 508, 566, 573, 637, 642
HpyF10VI GCNNNNNNNGC 2 cut(s) 52, 127
HpyF3I CTNAG 4 cut(s) 156, 194, 203, 371
Hsp92I GRCGYC 1 cut(s) 215
Hsp92II CATG 1 cut(s) 503
Kzo9I GATC 4 cut(s) 59, 161, 175, 304
LmnI GCTCC 1 cut(s) 295
LpnPI CCDG 9 cut(s) 20, 144, 181, 305, 307, 335, 368, 494, 609
LweI GCATC 1 cut(s) 553
MaeI CTAG 2 cut(s) 47, 57
MaeIII GTNAC 2 cut(s) 315, 457
MalI GATC 4 cut(s) 61, 163, 177, 306
MboI GATC 4 cut(s) 59, 161, 175, 304
MboII GAAGA 6 cut(s) 273, 276, 319, 398, 481, 596
MflI RGATCY 1 cut(s) 304
MhlI GDGCHC 1 cut(s) 32
MluCI AATT 4 cut(s) 69, 104, 408, 448
MluI ACGCGT 1 cut(s) 417
MlyI GAGTC 1 cut(s) 608
MnlI CCTC 9 cut(s) 28, 117, 160, 183, 235, 261, 346, 487, 538
MseI TTAA 5 cut(s) 89, 429, 435, 447, 528
MslI CAYNNNNRTG 3 cut(s) 149, 263, 489
MspCI CTTAAG 1 cut(s) 434
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 132
MvnI CGCG 1 cut(s) 419
MwoI GCNNNNNNNGC 2 cut(s) 52, 127
NciI CCSGG 1 cut(s) 132
NdeII GATC 4 cut(s) 59, 161, 175, 304
NlaIII CATG 1 cut(s) 503
NlaIV GGNNCC 3 cut(s) 7, 200, 306
NmuCI GTSAC 1 cut(s) 457
OliI CACNNNNGTG 1 cut(s) 149
PaeR7I CTCGAG 1 cut(s) 25
PfeI GAWTC 1 cut(s) 14
PflFI GACNNNGTC 1 cut(s) 151
Ple19I CGATCG 1 cut(s) 164
PleI GAGTC 1 cut(s) 607
PpsI GAGTC 1 cut(s) 607
PpuMI RGGWCCY 1 cut(s) 198
PshAI GACNNNNGTC 1 cut(s) 598
Psp124BI GAGCTC 1 cut(s) 32
Psp5II RGGWCCY 1 cut(s) 198
PspN4I GGNNCC 3 cut(s) 7, 200, 306
PspPI GGNCC 2 cut(s) 198, 593
PspPPI RGGWCCY 1 cut(s) 198
PstI CTGCAG 1 cut(s) 510
PsuI RGATCY 1 cut(s) 304
PsyI GACNNNGTC 1 cut(s) 151
PvuI CGATCG 1 cut(s) 164
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
RseI CAYNNNNRTG 3 cut(s) 149, 263, 489
SacI GAGCTC 1 cut(s) 32
SaqAI TTAA 5 cut(s) 89, 429, 435, 447, 528
Sau3AI GATC 4 cut(s) 59, 161, 175, 304
Sau96I GGNCC 2 cut(s) 198, 593
SchI GAGTC 1 cut(s) 608
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 1 cut(s) 32
SfaNI GCATC 1 cut(s) 553
SfcI CTRYAG 1 cut(s) 506
Sfr274I CTCGAG 1 cut(s) 25
SinI GGWCC 2 cut(s) 198, 593
SlaI CTCGAG 1 cut(s) 25
SmiMI CAYNNNNRTG 3 cut(s) 149, 263, 489
SmlI CTYRAG 2 cut(s) 25, 434
SmoI CTYRAG 2 cut(s) 25, 434
Sse9I AATT 4 cut(s) 69, 104, 408, 448
SsiI CCGC 2 cut(s) 413, 585
SspMI CTAG 2 cut(s) 47, 57
SstI GAGCTC 1 cut(s) 32
StyD4I CCNGG 1 cut(s) 130
TaaI ACNGT 3 cut(s) 151, 341, 560
TaqI TCGA 3 cut(s) 26, 212, 332
TaqII GACCGA 1 cut(s) 597
TasI AATT 4 cut(s) 69, 104, 408, 448
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 5 cut(s) 89, 429, 435, 447, 528
Tru9I TTAA 5 cut(s) 89, 429, 435, 447, 528
TscAI CASTG 4 cut(s) 462, 510, 573, 644
TseFI GTSAC 1 cut(s) 457
Tsp45I GTSAC 1 cut(s) 457
TspDTI ATGAA 3 cut(s) 153, 482, 488
TspGWI ACGGA 1 cut(s) 557
TspRI CASTG 4 cut(s) 462, 510, 573, 644
Tth111I GACNNNGTC 1 cut(s) 151
Vha464I CTTAAG 1 cut(s) 434
VpaK11BI GGWCC 2 cut(s) 198, 593
XapI RAATTY 1 cut(s) 104
XhoI CTCGAG 1 cut(s) 25
XspI CTAG 2 cut(s) 47, 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.