RLG00000021865

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000811
Physical Location & Seq
Forward (+)
78913292 .. 78916815
3524 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021865

Sequence Viewer

Length: 699 bp
ATGGGAGAAAGCAGAGGCGTCGTTGGATTCGTTGATCGTCGGGTTCAACAGTCAGATCTCAAAGCTCCAAGAGCTCGTTATTGCTCGAAATACGATTTGGGTATTTGTTTCTGGTGGCTGCAGAATATTTGGTTCAGGGCGATGGGCTACGGACATCTTTATGTAGAAGAACTTCTTTTTGCAGTCATTGTTTTTCTATTCTCCCAGAAAAGTTACAAGCCCCCTAAGAAGCCTTTAACAGAGAAGTCAACGCCATTACTGACTTCACCCCCAAGTGAGGGTAGCTTGACTGACATTTTAGTGAGGAAACCTTCGTCTTTTTCAGCTCCCAGTATTGTGGATCCGAAAGTGTTACTGGAATTCTTCTCGATGTACCGTGAGTGGCAGGAGGAGAATGTCAAAAAGCTGAACCAAAAACAGGAAGAGATAGAGAACAAGATAGAAATTGCGGACGCGTTGTCTGTTAAACTTAAGCAACGTTTTAATTATTCAGTGACAGCAATGAAGACATCCTCGCAACATTTATGTGGAGTTCATGCACTGCAGGTAGAGATTGGGGAACTTAAAGGAAGGTTGACGGAGGTTATTAGCAACTGTGATGCAGTGTGCAAGAGAATATCCGCAGAAGGACCAGAGTCTCTTCGGTCATCTGTCAAGCCATTAGTTATCTGCACCGCACACCAAGAACACCAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

26.39

Weight (kDa)

8.82

Isoelectric Point (pI)

51.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 535
AccII CGCG 1 cut(s) 455
AciI CCGC 3 cut(s) 449, 621, 675
AclI AACGTT 1 cut(s) 478
AclWI GGATC 2 cut(s) 335, 348
AcsI RAATTY 1 cut(s) 359
AcyI GRCGYC 1 cut(s) 18
AfaI GTAC 1 cut(s) 374
AfiI CCNNNNNNNGG 3 cut(s) 277, 278, 418
AflII CTTAAG 1 cut(s) 470
AflIII ACRYGT 1 cut(s) 453
AgsI TTSAA 1 cut(s) 47
AhdI GACNNNNNGTC 1 cut(s) 457
AjuI GAANNNNNNNTTGG 2 cut(s) 80, 112
AluBI AGCT 5 cut(s) 65, 74, 285, 326, 406
AluI AGCT 5 cut(s) 65, 74, 285, 326, 406
Alw21I GWGCWC 1 cut(s) 76
Alw26I GTCTC 1 cut(s) 642
AlwI GGATC 2 cut(s) 335, 348
ApeKI GCWGC 1 cut(s) 118
ApoI RAATTY 1 cut(s) 359
Asp700I GAANNNNTTC 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 629
AsuHPI GGTGA 1 cut(s) 258
AvaII GGWCC 1 cut(s) 629
BamHI GGATCC 1 cut(s) 340
BanII GRGCYC 1 cut(s) 76
BarI GAAGNNNNNNTAC 2 cut(s) 156, 188
BbsI GAAGAC 1 cut(s) 512
Bbv12I GWGCWC 1 cut(s) 76
BbvI GCAGC 1 cut(s) 105
BccI CCATC 1 cut(s) 136
BcgI CGANNNNNNTGC 1 cut(s) 35
BcoDI GTCTC 1 cut(s) 642
BfmI CTRYAG 2 cut(s) 119, 542
BfrI CTTAAG 1 cut(s) 470
BfuAI ACCTGC 1 cut(s) 535
BglII AGATCT 1 cut(s) 55
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
Bme18I GGWCC 1 cut(s) 629
BmeRI GACNNNNNGTC 1 cut(s) 457
BmgT120I GGNCC 1 cut(s) 629
BmiI GGNNCC 1 cut(s) 342
BmrI ACTGGG 1 cut(s) 324
BmsI GCATC 1 cut(s) 589
BmuI ACTGGG 1 cut(s) 324
BoxI GACNNNNGTC 1 cut(s) 634
BpiI GAAGAC 1 cut(s) 512
BsaHI GRCGYC 1 cut(s) 18
Bsc4I CCNNNNNNNGG 3 cut(s) 277, 278, 418
Bse1I ACTGG 2 cut(s) 330, 360
Bse3DI GCAATG 1 cut(s) 507
BseGI GGATG 1 cut(s) 509
BseLI CCNNNNNNNGG 3 cut(s) 277, 278, 418
BseMI GCAATG 1 cut(s) 507
BseNI ACTGG 2 cut(s) 330, 360
BseRI GAGGAG 1 cut(s) 404
BseXI GCAGC 1 cut(s) 105
BsgI GTGCAG 1 cut(s) 655
Bsh1236I CGCG 1 cut(s) 455
BsiHKAI GWGCWC 1 cut(s) 76
BslI CCNNNNNNNGG 3 cut(s) 277, 278, 418
BsmAI GTCTC 1 cut(s) 642
Bsp1286I GDGCHC 1 cut(s) 76
Bsp143I GATC 3 cut(s) 34, 55, 340
BspACI CCGC 3 cut(s) 449, 621, 675
BspFNI CGCG 1 cut(s) 455
BspLI GGNNCC 1 cut(s) 342
BspMAI CTGCAG 2 cut(s) 123, 546
BspMI ACCTGC 1 cut(s) 535
BspPI GGATC 2 cut(s) 335, 348
BspTI CTTAAG 1 cut(s) 470
BsrDI GCAATG 1 cut(s) 507
BsrI ACTGG 2 cut(s) 330, 360
BssMI GATC 3 cut(s) 34, 55, 340
BssNI GRCGYC 1 cut(s) 18
Bst4CI ACNGT 3 cut(s) 51, 377, 596
Bst6I CTCTTC 2 cut(s) 417, 645
BstACI GRCGYC 1 cut(s) 18
BstAFI CTTAAG 1 cut(s) 470
BstDEI CTNAG 1 cut(s) 225
BstF5I GGATG 1 cut(s) 509
BstFNI CGCG 1 cut(s) 455
BstKTI GATC 3 cut(s) 37, 58, 343
BstMAI GTCTC 1 cut(s) 642
BstMBI GATC 3 cut(s) 34, 55, 340
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstPAI GACNNNNGTC 1 cut(s) 634
BstSFI CTRYAG 2 cut(s) 119, 542
BstUI CGCG 1 cut(s) 455
BstV1I GCAGC 1 cut(s) 105
BstV2I GAAGAC 1 cut(s) 512
BstX2I RGATCY 2 cut(s) 55, 340
BstXI CCANNNNNNTGG 1 cut(s) 337
BstYI RGATCY 2 cut(s) 55, 340
BtgZI GCGATG 1 cut(s) 155
BtsCI GGATG 1 cut(s) 509
BtsI GCAGTG 2 cut(s) 539, 609
BtsIMutI CAGTG 3 cut(s) 498, 539, 609
BveI ACCTGC 1 cut(s) 535
Cfr13I GGNCC 1 cut(s) 629
CseI GACGC 2 cut(s) 7, 461
Csp6I GTAC 1 cut(s) 373
CviAII CATG 1 cut(s) 536
CviQI GTAC 1 cut(s) 373
DdeI CTNAG 1 cut(s) 225
DpnI GATC 3 cut(s) 36, 57, 342
DpnII GATC 3 cut(s) 34, 55, 340
DriI GACNNNNNGTC 1 cut(s) 457
Eam1104I CTCTTC 2 cut(s) 417, 645
Eam1105I GACNNNNNGTC 1 cut(s) 457
EarI CTCTTC 2 cut(s) 417, 645
Ecl136II GAGCTC 1 cut(s) 74
Eco24I GRGCYC 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 629
Eco53kI GAGCTC 1 cut(s) 74
EcoICRI GAGCTC 1 cut(s) 74
EcoRI GAATTC 1 cut(s) 359
EcoT38I GRGCYC 1 cut(s) 76
FaeI CATG 1 cut(s) 539
FaiI YATR 3 cut(s) 162, 526, 537
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FatI CATG 1 cut(s) 535
Fnu4HI GCNGC 1 cut(s) 119
FokI GGATG 1 cut(s) 496
FriOI GRGCYC 1 cut(s) 76
Fsp4HI GCNGC 1 cut(s) 119
GluI GCNGC 1 cut(s) 119
HgaI GACGC 2 cut(s) 7, 461
Hin1I GRCGYC 1 cut(s) 18
Hin1II CATG 1 cut(s) 539
HincII GTYRAC 2 cut(s) 249, 576
HindII GTYRAC 2 cut(s) 249, 576
HinfI GANTC 2 cut(s) 27, 635
HphI GGTGA 1 cut(s) 258
Hpy166II GTNNAC 2 cut(s) 249, 576
Hpy188I TCNGA 2 cut(s) 55, 345
Hpy188III TCNNGA 2 cut(s) 367, 696
Hpy8I GTNNAC 2 cut(s) 249, 576
Hpy99I CGWCG 2 cut(s) 23, 42
HpyAV CCTTC 3 cut(s) 321, 564, 620
HpyCH4III ACNGT 3 cut(s) 51, 377, 596
HpyCH4IV ACGT 1 cut(s) 478
HpyCH4V TGCA 7 cut(s) 121, 182, 539, 544, 602, 609, 672
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 225
HpySE526I ACGT 1 cut(s) 478
Hsp92I GRCGYC 1 cut(s) 18
Hsp92II CATG 1 cut(s) 539
Kzo9I GATC 3 cut(s) 34, 55, 340
LmnI GCTCC 2 cut(s) 70, 331
LpnPI CCDG 9 cut(s) 97, 121, 218, 341, 343, 371, 404, 530, 645
Lsp1109I GCAGC 1 cut(s) 105
LweI GCATC 1 cut(s) 589
MaeII ACGT 1 cut(s) 478
MaeIII GTNAC 3 cut(s) 212, 351, 493
MalI GATC 3 cut(s) 36, 57, 342
MboI GATC 3 cut(s) 34, 55, 340
MboII GAAGA 5 cut(s) 179, 355, 434, 517, 632
MflI RGATCY 2 cut(s) 55, 340
MhlI GDGCHC 1 cut(s) 76
MluCI AATT 3 cut(s) 359, 444, 484
MluI ACGCGT 1 cut(s) 453
MlyI GAGTC 1 cut(s) 644
MmeI TCCRAC 1 cut(s) 4
MnlI CCTC 6 cut(s) 8, 271, 297, 382, 523, 574
MroXI GAANNNNTTC 1 cut(s) 171
MseI TTAA 5 cut(s) 236, 465, 471, 483, 564
MslI CAYNNNNRTG 3 cut(s) 159, 299, 525
MspCI CTTAAG 1 cut(s) 470
MvnI CGCG 1 cut(s) 455
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeII GATC 3 cut(s) 34, 55, 340
NlaIII CATG 1 cut(s) 539
NlaIV GGNNCC 1 cut(s) 342
NmuCI GTSAC 1 cut(s) 493
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PdmI GAANNNNTTC 1 cut(s) 171
PfeI GAWTC 1 cut(s) 27
PkrI GCNGC 1 cut(s) 120
PleI GAGTC 1 cut(s) 643
PpsI GAGTC 1 cut(s) 643
PshAI GACNNNNGTC 1 cut(s) 634
Psp124BI GAGCTC 1 cut(s) 76
Psp1406I AACGTT 1 cut(s) 478
PspN4I GGNNCC 1 cut(s) 342
PspPI GGNCC 1 cut(s) 629
PstI CTGCAG 2 cut(s) 123, 546
PsuI RGATCY 2 cut(s) 55, 340
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
RseI CAYNNNNRTG 3 cut(s) 159, 299, 525
SacI GAGCTC 1 cut(s) 76
SaqAI TTAA 5 cut(s) 236, 465, 471, 483, 564
SatI GCNGC 1 cut(s) 119
Sau3AI GATC 3 cut(s) 34, 55, 340
Sau96I GGNCC 1 cut(s) 629
SchI GAGTC 1 cut(s) 644
SduI GDGCHC 1 cut(s) 76
SfaNI GCATC 1 cut(s) 589
SfcI CTRYAG 2 cut(s) 119, 542
SinI GGWCC 1 cut(s) 629
SmiMI CAYNNNNRTG 3 cut(s) 159, 299, 525
SmlI CTYRAG 1 cut(s) 470
SmoI CTYRAG 1 cut(s) 470
Sse9I AATT 3 cut(s) 359, 444, 484
SsiI CCGC 3 cut(s) 449, 621, 675
SspI AATATT 1 cut(s) 127
SstI GAGCTC 1 cut(s) 76
TaaI ACNGT 3 cut(s) 51, 377, 596
TaiI ACGT 1 cut(s) 481
TaqI TCGA 2 cut(s) 86, 368
TaqII GACCGA 1 cut(s) 633
TasI AATT 3 cut(s) 359, 444, 484
TfiI GAWTC 1 cut(s) 27
Tru1I TTAA 5 cut(s) 236, 465, 471, 483, 564
Tru9I TTAA 5 cut(s) 236, 465, 471, 483, 564
TscAI CASTG 3 cut(s) 498, 546, 609
TseFI GTSAC 1 cut(s) 493
TseI GCWGC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 493
TspDTI ATGAA 2 cut(s) 518, 524
TspGWI ACGGA 2 cut(s) 165, 593
TspRI CASTG 3 cut(s) 498, 546, 609
Vha464I CTTAAG 1 cut(s) 470
VpaK11BI GGWCC 1 cut(s) 629
XapI RAATTY 1 cut(s) 359
XmnI GAANNNNTTC 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.