Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000811

Physical Location & Seq

Genomic Coordinates Reverse (-)

25127383 .. 25135207

Gene Structure 7825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0170500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGAGGCGGTGAATGTTCAACCAATACAAGCGAGGAGGCCTTACGAGGGAGAAGAGTCGGAAGGGGACTATGTCGCCATGAATAATGGAGCCGGAGCCGGAGCCGGAGCGAATCCTTCTCAAGTCACAATGAGTCGCTGCAGCAATTCCACTCGCACCAGTGAGCTCACCATCGCCTTCGAGGGCGAGGTCTACGTTTTTCCCGCCGTTACTCCCGATAAGGTTCAAGCAGTGCTGTTGCTACTGGGAGGACGTGATATGCCAGGCAGTGATATACCAAGCAGCGTTCCTAGCTCTGGGTTTTCGCTTCAACAGAATAGCAGGGGTATAGGGGACATCTCACGAAATTCAAAACTTTCACGAAGATTTGCATCTCTTGTTAGGTTCCGTGAAAAACGGAAAGAGAGGTGCTTTGACAAGAAAATTCGGTACAGTTGTCGTAAAGACATTGCGGAGAGAATGCATCGGAAGAATGGACAGTTTGCATCTTTGAAGGATCCTTCCAAATTGGTTGCGGGGAATTGTGATTCAAGTGATAGCACTTCTTGTCCAGAATCTGTCTTACGTAGATGTCAGCACTGTGGGATTAGTGAAAAGTCTACCCCAGCAATGCGGCGGGGACCAAATGGCCCAAGATCTCTCTGTAATGCTTGTGGTCTTAGGTGGGCAAATAAGGGAACTTTGAGAGATCTTACAAAATCAGGGAGGGATGTTTCTTTCGACCAAAATGAGCTGGAAAGCCCAGAGGAGAATAAGCCTATTGCATTGGATGCTGAAGTCCCTCCTCTGAGACTGGGCGACCAGGACATGCTTGAAACTGCTGAAGCTGCTACTAATCACGTATCCATCCAAATGGAGAATTCATCAGTCAACCTTGATGAGCAGGAGAATCTGGAAGAATTAGCCAATGCTTCAGGGACAGAATTTGAGATTCCTGCAAACTTCGAAGAGCAGGTGGTTGATTTTTATGATTGCAACATGGAGACTCACTGGGGAGGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003952 GO:0004359 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0016874 GO:0016879 GO:0016884 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

CN_hydrolase NAD_synthase

Protein Analysis

334

Amino Acids

36.71

Weight (kDa)

5.22

Isoelectric Point (pI)

52.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	53 - 83	6.7e-10	tify domain
CCT	PF06203	122 - 163	2.4e-14	CCT motif
Jas_motif	PF09425	122 - 145	2.5e-06	Jas motif
GATA	PF00320	191 - 227	1.6e-12	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66290 AT5G66290
fragaria_vesca	FvH4_1g12000 FvH4_2g21980
malus_domestica	MD02G1134200.v1.1 MD15G1247200.v1.1
prunus_persica	Prupe.7G166600_v2.0.a1 Prupe.7G166600_v2.0.a1
pyrus_communis	pycom02g10580
rosa_chinensis	RchiOBHm_Chr0c39g0503221 RchiOBHm_Chr1g0353231 RchiOBHm_Chr2g0099641 RchiOBHm_Chr2g0126361 RchiOBHm_Chr5g0080231
rosa_laevigata	RLG00000008117 RLG00000016900 RLG00000021865
rosa_multiflora	Rmu_sc0000394.1_g000010 Rmu_sc0000543.1_g000026 Rmu_sc0005120.1_g000016 Rmu_sc0006325.1_g000056 Rmu_sc0010438.1_g000001 Rmu_sc0035741.1_g000001 Rmu_ssc0000366.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142880 Rroxscaffold_3G00248750 Rroxscaffold_5G00378640 Rroxscaffold_5G00382790 Rroxscaffold_7G00190790
rosa_rugosa	Rorug02G0081700 Rorug02G0258300 Rorug06G0170500
rosa_samantha	Rh1CG034700 Rh1DG035400 Rh2AG131100 Rh2AG189600 Rh2AG189700 Rh2BG134500 Rh2BG230100 Rh2BG328200 Rh2CG135300 Rh2DG135900 Rh2DG196000 Rh2DG196100 Rh2DG196200 Rh3DG312100 Rh4CG305000 Rh4DG111800 Rh5AG369300 Rh5AG496200 Rh5AG496300 Rh5BG555300 Rh5CG578200 Rh5DG254100 Rh5DG254200 Rh6BG167500 Rh6BG167600 Rh6BG241100 Rh7AG282200 Rh7CG301400 Rh7CG301500 Rh7DG435700 Rh7DG435800
rosa_wichuraiana	Rw0G008970 Rw2G010150 Rw3G024850 Rw4G013560 Rw5G022800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	943
Acc36I	ACCTGC	1 cut(s)	943
AccI	GTMKAC	2 cut(s)	192, 599
AciI	CCGC	6 cut(s)	8, 204, 452, 515, 613, 616
AclWI	GGATC	2 cut(s)	491, 504
AcsI	RAATTY	4 cut(s)	346, 423, 859, 923
AcuI	CTGAAG	3 cut(s)	795, 843, 897
AfaI	GTAC	1 cut(s)	431
AfiI	CCNNNNNNNGG	2 cut(s)	47, 296
AgsI	TTSAA	7 cut(s)	20, 227, 311, 351, 493, 531, 815
AjiI	CACGTC	1 cut(s)	254
AjnI	CCWGG	2 cut(s)	262, 801
AluBI	AGCT	4 cut(s)	166, 294, 733, 827
AluI	AGCT	4 cut(s)	166, 294, 733, 827
Alw21I	GWGCWC	1 cut(s)	168
Alw26I	GTCTC	2 cut(s)	784, 977
AlwI	GGATC	2 cut(s)	491, 504
AlwNI	CAGNNNCTG	1 cut(s)	557
AoxI	GGCC	2 cut(s)	38, 628
ApeKI	GCWGC	4 cut(s)	138, 141, 282, 827
ApoI	RAATTY	4 cut(s)	346, 423, 859, 923
AspS9I	GGNCC	2 cut(s)	620, 629
AsuHPI	GGTGA	2 cut(s)	22, 160
AsuII	TTCGAA	1 cut(s)	945
AvaII	GGWCC	1 cut(s)	620
BaeI	ACNNNNGTAYC	2 cut(s)	421, 454
BamHI	GGATCC	1 cut(s)	496
BanII	GRGCYC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	168
BbvI	GCAGC	4 cut(s)	125, 153, 294, 814
BccI	CCATC	2 cut(s)	179, 854
BceAI	ACGGC	1 cut(s)	191
BciT130I	CCWGG	2 cut(s)	264, 803
BciVI	GTATCC	1 cut(s)	853
BcoDI	GTCTC	2 cut(s)	784, 977
BfaI	CTAG	1 cut(s)	291
BfmI	CTRYAG	1 cut(s)	139
BfuAI	ACCTGC	1 cut(s)	943
BfuI	GTATCC	1 cut(s)	853
BglII	AGATCT	2 cut(s)	635, 688
BisI	GCNGC	5 cut(s)	139, 142, 283, 614, 828
BlsI	GCNGC	5 cut(s)	140, 143, 284, 615, 829
Bme1390I	CCNGG	2 cut(s)	264, 803
Bme18I	GGWCC	1 cut(s)	620
BmgBI	CACGTC	1 cut(s)	254
BmgT120I	GGNCC	2 cut(s)	620, 629
BmiI	GGNNCC	6 cut(s)	91, 97, 103, 386, 498, 621
BmrFI	CCNGG	2 cut(s)	264, 803
BmrI	ACTGGG	3 cut(s)	254, 803, 1000
BmsI	GCATC	4 cut(s)	380, 472, 494, 760
BmuI	ACTGGG	3 cut(s)	254, 803, 1000
Bpu14I	TTCGAA	1 cut(s)	945
BpuEI	CTTGAG	1 cut(s)	105
BsaAI	YACGTR	2 cut(s)	566, 841
BsaBI	GATNNNNATC	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 296
Bse1I	ACTGG	4 cut(s)	159, 249, 798, 995
Bse3DI	GCAATG	2 cut(s)	447, 615
Bse8I	GATNNNNATC	1 cut(s)	370
BseBI	CCWGG	2 cut(s)	264, 803
BseGI	GGATG	3 cut(s)	715, 775, 846
BseJI	GATNNNNATC	1 cut(s)	370
BseLI	CCNNNNNNNGG	2 cut(s)	47, 296
BseMI	GCAATG	2 cut(s)	447, 615
BseMII	CTCAG	1 cut(s)	779
BseNI	ACTGG	4 cut(s)	159, 249, 798, 995
BseRI	GAGGAG	3 cut(s)	49, 761, 774
BseXI	GCAGC	4 cut(s)	125, 153, 294, 814
BseYI	CCCAGC	1 cut(s)	604
BshFI	GGCC	2 cut(s)	40, 630
BsiHKAI	GWGCWC	1 cut(s)	168
BsiSI	CCGG	3 cut(s)	93, 99, 105
BslFI	GGGAC	5 cut(s)	80, 347, 633, 764, 931
BslI	CCNNNNNNNGG	2 cut(s)	47, 296
BsmAI	GTCTC	2 cut(s)	784, 977
BsmFI	GGGAC	5 cut(s)	80, 347, 633, 764, 931
BsmI	GAATGC	1 cut(s)	465
BsnI	GGCC	2 cut(s)	40, 630
Bsp119I	TTCGAA	1 cut(s)	945
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	3 cut(s)	496, 635, 688
BspACI	CCGC	6 cut(s)	8, 204, 452, 515, 613, 616
BspANI	GGCC	2 cut(s)	40, 630
BspCNI	CTCAG	1 cut(s)	780
BspLI	GGNNCC	6 cut(s)	91, 97, 103, 386, 498, 621
BspMAI	CTGCAG	1 cut(s)	143
BspMI	ACCTGC	1 cut(s)	943
BspPI	GGATC	2 cut(s)	491, 504
BspQI	GCTCTTC	1 cut(s)	942
BspT104I	TTCGAA	1 cut(s)	945
BsrDI	GCAATG	2 cut(s)	447, 615
BsrI	ACTGG	4 cut(s)	159, 249, 798, 995
BssMI	GATC	3 cut(s)	496, 635, 688
Bst2UI	CCWGG	2 cut(s)	264, 803
Bst4CI	ACNGT	3 cut(s)	434, 480, 581
Bst6I	CTCTTC	2 cut(s)	48, 942
BstAPI	GCANNNNNTGC	1 cut(s)	770
BstBAI	YACGTR	2 cut(s)	566, 841
BstBI	TTCGAA	1 cut(s)	945
BstDEI	CTNAG	2 cut(s)	659, 788
BstF5I	GGATG	3 cut(s)	715, 775, 846
BstKTI	GATC	3 cut(s)	499, 638, 691
BstMAI	GTCTC	2 cut(s)	784, 977
BstMBI	GATC	3 cut(s)	496, 635, 688
BstMWI	GCNNNNNNNGC	3 cut(s)	291, 770, 827
BstNI	CCWGG	2 cut(s)	264, 803
BstNSI	RCATGY	1 cut(s)	811
BstSCI	CCNGG	2 cut(s)	262, 801
BstSFI	CTRYAG	1 cut(s)	139
BstSNI	TACGTA	1 cut(s)	566
BstV1I	GCAGC	4 cut(s)	125, 153, 294, 814
BstX2I	RGATCY	3 cut(s)	496, 635, 688
BstXI	CCANNNNNNTGG	1 cut(s)	853
BstYI	RGATCY	3 cut(s)	496, 635, 688
BsuI	GTATCC	1 cut(s)	853
BsuRI	GGCC	2 cut(s)	40, 630
BtgZI	GCGATG	1 cut(s)	157
BtrI	CACGTC	1 cut(s)	254
BtsCI	GGATG	3 cut(s)	715, 775, 846
BtsI	GCAGTG	2 cut(s)	237, 274
BtsIMutI	CAGTG	5 cut(s)	166, 237, 274, 577, 988
BveI	ACCTGC	1 cut(s)	943
CaiI	CAGNNNCTG	1 cut(s)	557
Cfr13I	GGNCC	2 cut(s)	620, 629
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	3 cut(s)	79, 808, 979
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	2 cut(s)	659, 788
DpnI	GATC	3 cut(s)	498, 637, 690
DpnII	GATC	3 cut(s)	496, 635, 688
Eam1104I	CTCTTC	2 cut(s)	48, 942
EarI	CTCTTC	2 cut(s)	48, 942
Ecl136II	GAGCTC	1 cut(s)	166
Eco105I	TACGTA	1 cut(s)	566
Eco147I	AGGCCT	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	620
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	3 cut(s)	795, 843, 897
EcoICRI	GAGCTC	1 cut(s)	166
EcoRI	GAATTC	1 cut(s)	859
EcoRII	CCWGG	2 cut(s)	262, 801
EcoT22I	ATGCAT	1 cut(s)	465
EcoT38I	GRGCYC	1 cut(s)	168
FaeI	CATG	3 cut(s)	82, 811, 982
FaiI	YATR	8 cut(s)	72, 80, 260, 275, 329, 809, 969, 980
FaqI	GGGAC	5 cut(s)	80, 347, 633, 764, 931
FatI	CATG	3 cut(s)	78, 807, 978
FauI	CCCGC	3 cut(s)	211, 508, 609
FblI	GTMKAC	2 cut(s)	192, 599
Fnu4HI	GCNGC	5 cut(s)	139, 142, 283, 614, 828
FokI	GGATG	3 cut(s)	722, 782, 833
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	5 cut(s)	139, 142, 283, 614, 828
FspBI	CTAG	1 cut(s)	291
GluI	GCNGC	5 cut(s)	139, 142, 283, 614, 828
GsaI	CCCAGC	1 cut(s)	608
HaeIII	GGCC	2 cut(s)	40, 630
HapII	CCGG	3 cut(s)	93, 99, 105
Hin1II	CATG	3 cut(s)	82, 811, 982
HincII	GTYRAC	1 cut(s)	871
HindII	GTYRAC	1 cut(s)	871
HinfI	GANTC	8 cut(s)	56, 112, 133, 527, 554, 889, 931, 985
HpaII	CCGG	3 cut(s)	93, 99, 105
HphI	GGTGA	2 cut(s)	22, 160
Hpy166II	GTNNAC	3 cut(s)	193, 600, 871
Hpy188I	TCNGA	3 cut(s)	61, 468, 789
Hpy188III	TCNNGA	5 cut(s)	215, 342, 360, 551, 893
Hpy8I	GTNNAC	3 cut(s)	193, 600, 871
HpyAV	CCTTC	5 cut(s)	56, 126, 187, 487, 510
HpyCH4III	ACNGT	3 cut(s)	434, 480, 581
HpyCH4IV	ACGT	4 cut(s)	195, 253, 565, 840
HpyCH4V	TGCA	7 cut(s)	141, 371, 463, 485, 764, 938, 975
HpyF10VI	GCNNNNNNNGC	3 cut(s)	291, 770, 827
HpyF3I	CTNAG	2 cut(s)	659, 788
HpySE526I	ACGT	4 cut(s)	195, 253, 565, 840
Hsp92II	CATG	3 cut(s)	82, 811, 982
Kzo9I	GATC	3 cut(s)	496, 635, 688
LguI	GCTCTTC	1 cut(s)	942
LmnI	GCTCC	4 cut(s)	89, 95, 101, 107
Lsp1109I	GCAGC	4 cut(s)	125, 153, 294, 814
LweI	GCATC	4 cut(s)	380, 472, 494, 760
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	4 cut(s)	195, 253, 565, 840
MaeIII	GTNAC	2 cut(s)	124, 208
MalI	GATC	3 cut(s)	498, 637, 690
MboI	GATC	3 cut(s)	496, 635, 688
MboII	GAAGA	5 cut(s)	65, 375, 481, 908, 959
MflI	RGATCY	3 cut(s)	496, 635, 688
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	8 cut(s)	145, 346, 423, 506, 520, 859, 899, 923
MlyI	GAGTC	3 cut(s)	65, 142, 979
MmeI	TCCRAC	1 cut(s)	39
Mph1103I	ATGCAT	1 cut(s)	465
MslI	CAYNNNNRTG	1 cut(s)	851
MspI	CCGG	3 cut(s)	93, 99, 105
MspR9I	CCNGG	2 cut(s)	264, 803
Mva1269I	GAATGC	1 cut(s)	465
MvaI	CCWGG	2 cut(s)	264, 803
MwoI	GCNNNNNNNGC	3 cut(s)	291, 770, 827
NdeII	GATC	3 cut(s)	496, 635, 688
NlaIII	CATG	3 cut(s)	82, 811, 982
NlaIV	GGNNCC	6 cut(s)	91, 97, 103, 386, 498, 621
NmuCI	GTSAC	1 cut(s)	124
NsiI	ATGCAT	1 cut(s)	465
NspI	RCATGY	1 cut(s)	811
NspV	TTCGAA	1 cut(s)	945
PaqCI	CACCTGC	1 cut(s)	943
PceI	AGGCCT	1 cut(s)	40
PciSI	GCTCTTC	1 cut(s)	942
PctI	GAATGC	1 cut(s)	465
PfeI	GAWTC	5 cut(s)	112, 527, 554, 889, 931
PflFI	GACNNNGTC	1 cut(s)	71
PkrI	GCNGC	5 cut(s)	140, 143, 284, 615, 829
PleI	GAGTC	3 cut(s)	64, 141, 979
PpsI	GAGTC	3 cut(s)	64, 141, 979
Ppu21I	YACGTR	2 cut(s)	566, 841
Psp124BI	GAGCTC	1 cut(s)	168
Psp6I	CCWGG	2 cut(s)	262, 801
PspFI	CCCAGC	1 cut(s)	604
PspGI	CCWGG	2 cut(s)	262, 801
PspN4I	GGNNCC	6 cut(s)	91, 97, 103, 386, 498, 621
PspPI	GGNCC	2 cut(s)	620, 629
PstI	CTGCAG	1 cut(s)	143
PstNI	CAGNNNCTG	1 cut(s)	557
PsuI	RGATCY	3 cut(s)	496, 635, 688
PsyI	GACNNNGTC	1 cut(s)	71
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
RseI	CAYNNNNRTG	1 cut(s)	851
SacI	GAGCTC	1 cut(s)	168
SapI	GCTCTTC	1 cut(s)	942
SatI	GCNGC	5 cut(s)	139, 142, 283, 614, 828
Sau3AI	GATC	3 cut(s)	496, 635, 688
Sau96I	GGNCC	2 cut(s)	620, 629
SchI	GAGTC	3 cut(s)	65, 142, 979
ScrFI	CCNGG	2 cut(s)	264, 803
SduI	GDGCHC	1 cut(s)	168
SfaNI	GCATC	4 cut(s)	380, 472, 494, 760
SfcI	CTRYAG	1 cut(s)	139
SfuI	TTCGAA	1 cut(s)	945
SinI	GGWCC	1 cut(s)	620
SmiMI	CAYNNNNRTG	1 cut(s)	851
SmlI	CTYRAG	1 cut(s)	120
SmoI	CTYRAG	1 cut(s)	120
SnaBI	TACGTA	1 cut(s)	566
Sse9I	AATT	8 cut(s)	145, 346, 423, 506, 520, 859, 899, 923
SseBI	AGGCCT	1 cut(s)	40
SsiI	CCGC	6 cut(s)	8, 204, 452, 515, 613, 616
SspMI	CTAG	1 cut(s)	291
SstI	GAGCTC	1 cut(s)	168
StuI	AGGCCT	1 cut(s)	40
StyD4I	CCNGG	2 cut(s)	262, 801
TaaI	ACNGT	3 cut(s)	434, 480, 581
TaiI	ACGT	4 cut(s)	198, 256, 568, 843
TaqI	TCGA	3 cut(s)	180, 720, 945
TasI	AATT	8 cut(s)	145, 346, 423, 506, 520, 859, 899, 923
TauI	GCSGC	1 cut(s)	616
TfiI	GAWTC	5 cut(s)	112, 527, 554, 889, 931
TscAI	CASTG	5 cut(s)	166, 237, 274, 584, 995
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	4 cut(s)	138, 141, 282, 827
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	2 cut(s)	95, 852
TspGWI	ACGGA	2 cut(s)	377, 412
TspRI	CASTG	5 cut(s)	166, 237, 274, 584, 995
Tth111I	GACNNNGTC	1 cut(s)	71
VpaK11BI	GGWCC	1 cut(s)	620
XapI	RAATTY	4 cut(s)	346, 423, 859, 923
XceI	RCATGY	1 cut(s)	811
XmiI	GTMKAC	2 cut(s)	192, 599
XspI	CTAG	1 cut(s)	291
Zsp2I	ATGCAT	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.