Rroxscaffold_2G00142880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000811
Physical Location & Seq
Forward (+)
80967645 .. 80969988
2344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00142880.1

Sequence Viewer

Length: 642 bp
ATGGGTGCCACAGAATCCACACACTCGAGCTCACAGAGGCGGCCGGGCGATGAAATCACGACCGTGTCTGAGCGATCGGAGGTGGCCGATCCTATATTAGAGAGGCTCAGGTCCCTAAGAATTTCGACGCCATTACTGACTTCACCCCCAAGTGAGGGTAGCTTGACTGACATTTTAGTGAGGAAACCTTCGTCTTCTTCAGCTCCCAGTATTGTGGATCCGAAAGTGTTACTGGAACTCTTCTCGATGTACCGTGAGTGGCAGGAGGAGAATGTCAAAAAGCTGAGCCAAAAACAGGAAGAGATAGAGAACAAGATAGAAATTGCGGACGCGTTGTCTGTTAAACTTAAGCAACGTTTTAATTATTCAGTGACAGCAATGAAGACATCCTCGCAACATTTATGTGGAGATGTTGATGGACCTACTGTAGAGATTGGGGAACTTAAAGGAAGGTTGACGGAGGTTATTAGCAACTGTGATGCAGTGTGCAAGAGAATATCCGCAGAAGGACCAGAGTCTCTTCGGTCATCTGTCAAGCCTTTGGTTATCTGCACCGCACACCAAGAGCACCAATCTGCCTCGTCTGATCTACAAAGAGATCTAACACCAAGTCTACCTTCTACAGAAACCAAGTTAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

23.43

Weight (kDa)

5.38

Isoelectric Point (pI)

66.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 5
AccI GTMKAC 1 cut(s) 613
AccII CGCG 1 cut(s) 332
AciI CCGC 4 cut(s) 40, 326, 501, 555
AclI AACGTT 1 cut(s) 355
AclWI GGATC 3 cut(s) 83, 212, 225
AcoI YGGCCR 2 cut(s) 41, 84
AcsI RAATTY 1 cut(s) 120
AcuI CTGAAG 1 cut(s) 183
AcyI GRCGYC 1 cut(s) 128
AfaI GTAC 1 cut(s) 251
AfiI CCNNNNNNNGG 3 cut(s) 154, 155, 295
AflII CTTAAG 1 cut(s) 347
AflIII ACRYGT 1 cut(s) 330
AhdI GACNNNNNGTC 1 cut(s) 334
AjuI GAANNNNNNNTTGG 2 cut(s) 601, 633
AleI CACNNNNGTG 1 cut(s) 62
AluBI AGCT 4 cut(s) 30, 162, 203, 283
AluI AGCT 4 cut(s) 30, 162, 203, 283
Alw21I GWGCWC 2 cut(s) 32, 570
Alw26I GTCTC 1 cut(s) 522
AlwI GGATC 3 cut(s) 83, 212, 225
Ama87I CYCGRG 1 cut(s) 25
AoxI GGCC 2 cut(s) 41, 84
ApoI RAATTY 1 cut(s) 120
AspS9I GGNCC 3 cut(s) 111, 419, 509
AsuC2I CCSGG 1 cut(s) 45
AsuHPI GGTGA 1 cut(s) 135
AvaI CYCGRG 1 cut(s) 25
AvaII GGWCC 3 cut(s) 111, 419, 509
BamHI GGATCC 1 cut(s) 217
BanI GGYRCC 1 cut(s) 5
BanII GRGCYC 1 cut(s) 32
BbsI GAAGAC 2 cut(s) 186, 389
Bbv12I GWGCWC 2 cut(s) 32, 570
BccI CCATC 1 cut(s) 410
BcnI CCSGG 1 cut(s) 45
BcoDI GTCTC 1 cut(s) 522
BfmI CTRYAG 2 cut(s) 426, 621
BfrI CTTAAG 1 cut(s) 347
BglII AGATCT 1 cut(s) 598
BisI GCNGC 1 cut(s) 41
BlpI GCTNAGC 1 cut(s) 284
BlsI GCNGC 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 45
Bme18I GGWCC 3 cut(s) 111, 419, 509
BmeRI GACNNNNNGTC 1 cut(s) 334
BmeT110I CYCGRG 1 cut(s) 25
BmgT120I GGNCC 3 cut(s) 111, 419, 509
BmiI GGNNCC 3 cut(s) 7, 113, 219
BmrFI CCNGG 1 cut(s) 45
BmrI ACTGGG 1 cut(s) 201
BmsI GCATC 1 cut(s) 469
BmuI ACTGGG 1 cut(s) 201
BoxI GACNNNNGTC 1 cut(s) 514
BpiI GAAGAC 2 cut(s) 186, 389
Bpu10I CCTNAGC 1 cut(s) 107
Bpu1102I GCTNAGC 1 cut(s) 284
BpuMI CCSGG 1 cut(s) 45
BsaHI GRCGYC 1 cut(s) 128
Bsc4I CCNNNNNNNGG 3 cut(s) 154, 155, 295
Bse1I ACTGG 2 cut(s) 207, 237
Bse3DI GCAATG 1 cut(s) 384
BseGI GGATG 1 cut(s) 386
BseLI CCNNNNNNNGG 3 cut(s) 154, 155, 295
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 3 cut(s) 60, 121, 275
BseNI ACTGG 2 cut(s) 207, 237
BseRI GAGGAG 1 cut(s) 281
BseX3I CGGCCG 1 cut(s) 41
BsgI GTGCAG 1 cut(s) 535
Bsh1236I CGCG 1 cut(s) 332
Bsh1285I CGRYCG 3 cut(s) 44, 63, 77
BshFI GGCC 2 cut(s) 43, 86
BshNI GGYRCC 1 cut(s) 5
BsiEI CGRYCG 3 cut(s) 44, 63, 77
BsiHKAI GWGCWC 2 cut(s) 32, 570
BsiHKCI CYCGRG 1 cut(s) 25
BsiSI CCGG 1 cut(s) 44
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 3 cut(s) 154, 155, 295
BsmAI GTCTC 1 cut(s) 522
BsmFI GGGAC 1 cut(s) 97
BsnI GGCC 2 cut(s) 43, 86
BsoBI CYCGRG 1 cut(s) 25
Bsp1286I GDGCHC 2 cut(s) 32, 570
Bsp143I GATC 5 cut(s) 74, 88, 217, 586, 598
Bsp1720I GCTNAGC 1 cut(s) 284
BspACI CCGC 4 cut(s) 40, 326, 501, 555
BspANI GGCC 2 cut(s) 43, 86
BspCNI CTCAG 3 cut(s) 61, 120, 276
BspFNI CGCG 1 cut(s) 332
BspLI GGNNCC 3 cut(s) 7, 113, 219
BspPI GGATC 3 cut(s) 83, 212, 225
BspT107I GGYRCC 1 cut(s) 5
BspTI CTTAAG 1 cut(s) 347
BsrDI GCAATG 1 cut(s) 384
BsrI ACTGG 2 cut(s) 207, 237
BssMI GATC 5 cut(s) 74, 88, 217, 586, 598
BssNI GRCGYC 1 cut(s) 128
Bst4CI ACNGT 4 cut(s) 64, 254, 427, 476
Bst6I CTCTTC 3 cut(s) 245, 294, 525
BstACI GRCGYC 1 cut(s) 128
BstAFI CTTAAG 1 cut(s) 347
BstDEI CTNAG 4 cut(s) 69, 107, 116, 284
BstF5I GGATG 1 cut(s) 386
BstFNI CGCG 1 cut(s) 332
BstKTI GATC 5 cut(s) 77, 91, 220, 589, 601
BstMAI GTCTC 1 cut(s) 522
BstMBI GATC 5 cut(s) 74, 88, 217, 586, 598
BstMCI CGRYCG 3 cut(s) 44, 63, 77
BstPAI GACNNNNGTC 1 cut(s) 514
BstSCI CCNGG 1 cut(s) 43
BstSFI CTRYAG 2 cut(s) 426, 621
BstUI CGCG 1 cut(s) 332
BstV2I GAAGAC 2 cut(s) 186, 389
BstX2I RGATCY 2 cut(s) 217, 598
BstXI CCANNNNNNTGG 1 cut(s) 214
BstYI RGATCY 2 cut(s) 217, 598
BstZI CGGCCG 1 cut(s) 41
BsuRI GGCC 2 cut(s) 43, 86
BtgZI GCGATG 1 cut(s) 63
BtsCI GGATG 1 cut(s) 386
BtsI GCAGTG 1 cut(s) 489
BtsIMutI CAGTG 2 cut(s) 375, 489
Cfr13I GGNCC 3 cut(s) 111, 419, 509
CseI GACGC 2 cut(s) 136, 338
Csp6I GTAC 1 cut(s) 250
CviJI RGCY 9 cut(s) 30, 43, 86, 106, 162, 203, 283, 288, 538
CviKI_1 RGCY 9 cut(s) 30, 43, 86, 106, 162, 203, 283, 288, 538
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 4 cut(s) 69, 107, 116, 284
DpnI GATC 5 cut(s) 76, 90, 219, 588, 600
DpnII GATC 5 cut(s) 74, 88, 217, 586, 598
DriI GACNNNNNGTC 1 cut(s) 334
EaeI YGGCCR 2 cut(s) 41, 84
EagI CGGCCG 1 cut(s) 41
Eam1104I CTCTTC 3 cut(s) 245, 294, 525
Eam1105I GACNNNNNGTC 1 cut(s) 334
EarI CTCTTC 3 cut(s) 245, 294, 525
Ecl136II GAGCTC 1 cut(s) 30
EclXI CGGCCG 1 cut(s) 41
Eco24I GRGCYC 1 cut(s) 32
Eco47I GGWCC 3 cut(s) 111, 419, 509
Eco52I CGGCCG 1 cut(s) 41
Eco53kI GAGCTC 1 cut(s) 30
Eco57I CTGAAG 1 cut(s) 183
Eco88I CYCGRG 1 cut(s) 25
EcoICRI GAGCTC 1 cut(s) 30
EcoO109I RGGNCCY 1 cut(s) 111
EcoT38I GRGCYC 1 cut(s) 32
FaiI YATR 2 cut(s) 95, 403
FalI AAGNNNNNCTT 2 cut(s) 601, 633
FaqI GGGAC 1 cut(s) 97
FblI GTMKAC 1 cut(s) 613
Fnu4HI GCNGC 1 cut(s) 41
FokI GGATG 1 cut(s) 373
FriOI GRGCYC 1 cut(s) 32
Fsp4HI GCNGC 1 cut(s) 41
GluI GCNGC 1 cut(s) 41
HaeIII GGCC 2 cut(s) 43, 86
HapII CCGG 1 cut(s) 44
HgaI GACGC 2 cut(s) 136, 338
Hin1I GRCGYC 1 cut(s) 128
HincII GTYRAC 1 cut(s) 456
HindII GTYRAC 1 cut(s) 456
HinfI GANTC 2 cut(s) 14, 515
HpaII CCGG 1 cut(s) 44
HphI GGTGA 1 cut(s) 135
Hpy166II GTNNAC 2 cut(s) 456, 614
Hpy188I TCNGA 4 cut(s) 70, 79, 222, 586
Hpy188III TCNNGA 2 cut(s) 58, 244
Hpy8I GTNNAC 2 cut(s) 456, 614
Hpy99I CGWCG 1 cut(s) 130
HpyAV CCTTC 4 cut(s) 198, 444, 500, 627
HpyCH4III ACNGT 4 cut(s) 64, 254, 427, 476
HpyCH4IV ACGT 1 cut(s) 355
HpyCH4V TGCA 3 cut(s) 482, 489, 552
HpyF3I CTNAG 4 cut(s) 69, 107, 116, 284
HpySE526I ACGT 1 cut(s) 355
Hsp92I GRCGYC 1 cut(s) 128
Kzo9I GATC 5 cut(s) 74, 88, 217, 586, 598
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 7 cut(s) 57, 94, 218, 220, 248, 281, 525
LweI GCATC 1 cut(s) 469
MaeII ACGT 1 cut(s) 355
MaeIII GTNAC 2 cut(s) 228, 370
MalI GATC 5 cut(s) 76, 90, 219, 588, 600
MboI GATC 5 cut(s) 74, 88, 217, 586, 598
MboII GAAGA 6 cut(s) 186, 189, 232, 311, 394, 512
MflI RGATCY 2 cut(s) 217, 598
MhlI GDGCHC 2 cut(s) 32, 570
MluCI AATT 3 cut(s) 120, 321, 361
MluI ACGCGT 1 cut(s) 330
MlyI GAGTC 1 cut(s) 524
MnlI CCTC 9 cut(s) 30, 73, 96, 148, 174, 259, 400, 454, 589
MseI TTAA 4 cut(s) 342, 348, 360, 444
MslI CAYNNNNRTG 3 cut(s) 62, 176, 402
MspCI CTTAAG 1 cut(s) 347
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 1 cut(s) 45
MvnI CGCG 1 cut(s) 332
NciI CCSGG 1 cut(s) 45
NdeII GATC 5 cut(s) 74, 88, 217, 586, 598
NlaIV GGNNCC 3 cut(s) 7, 113, 219
NmuCI GTSAC 1 cut(s) 370
OliI CACNNNNGTG 1 cut(s) 62
PaeR7I CTCGAG 1 cut(s) 25
PfeI GAWTC 1 cut(s) 14
PflFI GACNNNGTC 1 cut(s) 64
PkrI GCNGC 1 cut(s) 42
Ple19I CGATCG 1 cut(s) 77
PleI GAGTC 1 cut(s) 523
PpsI GAGTC 1 cut(s) 523
PpuMI RGGWCCY 1 cut(s) 111
PshAI GACNNNNGTC 1 cut(s) 514
Psp124BI GAGCTC 1 cut(s) 32
Psp1406I AACGTT 1 cut(s) 355
Psp5II RGGWCCY 1 cut(s) 111
PspN4I GGNNCC 3 cut(s) 7, 113, 219
PspPI GGNCC 3 cut(s) 111, 419, 509
PspPPI RGGWCCY 1 cut(s) 111
PspXI VCTCGAGB 1 cut(s) 25
PsuI RGATCY 2 cut(s) 217, 598
PsyI GACNNNGTC 1 cut(s) 64
PvuI CGATCG 1 cut(s) 77
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
RseI CAYNNNNRTG 3 cut(s) 62, 176, 402
SacI GAGCTC 1 cut(s) 32
SaqAI TTAA 4 cut(s) 342, 348, 360, 444
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 5 cut(s) 74, 88, 217, 586, 598
Sau96I GGNCC 3 cut(s) 111, 419, 509
SchI GAGTC 1 cut(s) 524
ScrFI CCNGG 1 cut(s) 45
SduI GDGCHC 2 cut(s) 32, 570
SfaNI GCATC 1 cut(s) 469
SfcI CTRYAG 2 cut(s) 426, 621
Sfr274I CTCGAG 1 cut(s) 25
SinI GGWCC 3 cut(s) 111, 419, 509
SlaI CTCGAG 1 cut(s) 25
SmiMI CAYNNNNRTG 3 cut(s) 62, 176, 402
SmlI CTYRAG 2 cut(s) 25, 347
SmoI CTYRAG 2 cut(s) 25, 347
Sse9I AATT 3 cut(s) 120, 321, 361
SsiI CCGC 4 cut(s) 40, 326, 501, 555
SstI GAGCTC 1 cut(s) 32
StyD4I CCNGG 1 cut(s) 43
TaaI ACNGT 4 cut(s) 64, 254, 427, 476
TaiI ACGT 1 cut(s) 358
TaqI TCGA 3 cut(s) 26, 125, 245
TaqII GACCGA 1 cut(s) 513
TasI AATT 3 cut(s) 120, 321, 361
TauI GCSGC 1 cut(s) 43
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 4 cut(s) 342, 348, 360, 444
Tru9I TTAA 4 cut(s) 342, 348, 360, 444
TscAI CASTG 2 cut(s) 375, 489
TseFI GTSAC 1 cut(s) 370
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 2 cut(s) 66, 395
TspGWI ACGGA 1 cut(s) 473
TspRI CASTG 2 cut(s) 375, 489
Tth111I GACNNNGTC 1 cut(s) 64
Vha464I CTTAAG 1 cut(s) 347
VpaK11BI GGWCC 3 cut(s) 111, 419, 509
XapI RAATTY 1 cut(s) 120
XhoI CTCGAG 1 cut(s) 25
XmiI GTMKAC 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.