Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000811

Physical Location & Seq

Genomic Coordinates Forward (+)

62043879 .. 62047216

Gene Structure 3338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG435800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGCTAGAAGCTCTCCAGGAGATTGAAATTGCTTCCAGATTAGTCGGTTTTGATGCTGATAGTGATGACTCTTTGGATGAGAAGTATAAGAAGCTCCGGTGTTGTATGAATCCACTACTCCACGATAGTGAAGATTATCGGTTGATTGAAAAGTATCTTCTTACTACTCATGCCCCTACACATACCATGGGTTTGCATTTTGATACTCTAGTGCATATTGTCCTGTTTGGCAAGGGGATTTACTTTGCTGACCTTGTCAGTAAGAGTGCTCAGTATTTTGCAGGTATTGTGGATCCGAAAATGTTACTGGAACTCTTCTCGATGTACCGTGAGTGGCAGGAGGAGAATGTCAAAAAGCTGAGCCAAAAACAGGTAGAGATTGGGGAACTTAAAGGAAGGTTGACGGAGGTTATTAGCAACTGTGATGCAATGTGCAAGAGAATATCCGCAGAAGGACCAGAGTCTCTTCGGTCATCTGTCAAGCCATTAGTTATCTGCACCACACATCAAGAACACCAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0003950 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006464 GO:0006471 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016070 GO:0016740 GO:0016757 GO:0016763 GO:0016874 GO:0016886 GO:0019538 GO:0022616 GO:0033554 GO:0033993 GO:0034641 GO:0034645 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0071704 GO:0090304 GO:0097305 GO:0140097 GO:1901360 GO:1901564 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 map03410 map04210 map04212 map04214 map04217

Pfam Domains

Protein Families

BRCT PADR1 PARP PARP_reg WGR zf-PARP

Protein Analysis

174

Amino Acids

19.88

Weight (kDa)

5.49

Isoelectric Point (pI)

46.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66290 AT5G66290
fragaria_vesca	FvH4_1g12000 FvH4_2g21980
malus_domestica	MD02G1134200.v1.1 MD15G1247200.v1.1
prunus_persica	Prupe.7G166600_v2.0.a1 Prupe.7G166600_v2.0.a1
pyrus_communis	pycom02g10580
rosa_chinensis	RchiOBHm_Chr0c39g0503221 RchiOBHm_Chr1g0353231 RchiOBHm_Chr2g0099641 RchiOBHm_Chr2g0126361 RchiOBHm_Chr5g0080231
rosa_laevigata	RLG00000008117 RLG00000016900 RLG00000021865
rosa_multiflora	Rmu_sc0000394.1_g000010 Rmu_sc0000543.1_g000026 Rmu_sc0005120.1_g000016 Rmu_sc0006325.1_g000056 Rmu_sc0010438.1_g000001 Rmu_sc0035741.1_g000001 Rmu_ssc0000366.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142880 Rroxscaffold_3G00248750 Rroxscaffold_5G00378640 Rroxscaffold_5G00382790 Rroxscaffold_7G00190790
rosa_rugosa	Rorug02G0081700 Rorug02G0258300 Rorug06G0170500
rosa_samantha	Rh1CG034700 Rh1DG035400 Rh2AG131100 Rh2AG189600 Rh2AG189700 Rh2BG134500 Rh2BG230100 Rh2BG328200 Rh2CG135300 Rh2DG135900 Rh2DG196000 Rh2DG196100 Rh2DG196200 Rh3DG312100 Rh4CG305000 Rh4DG111800 Rh5AG369300 Rh5AG496200 Rh5AG496300 Rh5BG555300 Rh5CG578200 Rh5DG254100 Rh5DG254200 Rh6BG167500 Rh6BG167600 Rh6BG241100 Rh7AG282200 Rh7CG301400 Rh7CG301500 Rh7DG435700 Rh7DG435800
rosa_wichuraiana	Rw0G008970 Rw2G010150 Rw3G024850 Rw4G013560 Rw5G022800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	272
AciI	CCGC	1 cut(s)	447
AclWI	GGATC	2 cut(s)	287, 300
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	1 cut(s)	370
AgsI	TTSAA	2 cut(s)	26, 149
AjnI	CCWGG	1 cut(s)	15
AleI	CACNNNNGTG	1 cut(s)	126
AluBI	AGCT	3 cut(s)	11, 94, 358
AluI	AGCT	3 cut(s)	11, 94, 358
Alw21I	GWGCWC	1 cut(s)	271
Alw26I	GTCTC	1 cut(s)	468
AlwI	GGATC	2 cut(s)	287, 300
AspS9I	GGNCC	1 cut(s)	455
AvaII	GGWCC	1 cut(s)	455
BaeI	ACNNNNGTAYC	2 cut(s)	195, 228
BamHI	GGATCC	1 cut(s)	292
Bbv12I	GWGCWC	1 cut(s)	271
BciT130I	CCWGG	1 cut(s)	17
BcoDI	GTCTC	1 cut(s)	468
BfaI	CTAG	2 cut(s)	5, 209
BfuAI	ACCTGC	1 cut(s)	272
BlpI	GCTNAGC	1 cut(s)	359
Bme1390I	CCNGG	1 cut(s)	17
Bme18I	GGWCC	1 cut(s)	455
BmgT120I	GGNCC	1 cut(s)	455
BmiI	GGNNCC	1 cut(s)	294
BmrFI	CCNGG	1 cut(s)	17
BmsI	GCATC	2 cut(s)	43, 415
BoxI	GACNNNNGTC	1 cut(s)	460
Bpu1102I	GCTNAGC	1 cut(s)	359
BsaJI	CCNNGG	1 cut(s)	186
BsaWI	WCCGGW	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	1 cut(s)	370
Bse1I	ACTGG	1 cut(s)	312
Bse3DI	GCAATG	1 cut(s)	435
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	1 cut(s)	82
BseLI	CCNNNNNNNGG	1 cut(s)	370
BseMI	GCAATG	1 cut(s)	435
BseMII	CTCAG	2 cut(s)	284, 350
BseNI	ACTGG	1 cut(s)	312
BseRI	GAGGAG	1 cut(s)	356
BsgI	GTGCAG	1 cut(s)	481
BsiHKAI	GWGCWC	1 cut(s)	271
BsiSI	CCGG	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	370
BsmAI	GTCTC	1 cut(s)	468
Bsp1286I	GDGCHC	1 cut(s)	271
Bsp143I	GATC	1 cut(s)	292
Bsp1720I	GCTNAGC	1 cut(s)	359
Bsp19I	CCATGG	1 cut(s)	186
BspACI	CCGC	1 cut(s)	447
BspCNI	CTCAG	2 cut(s)	283, 351
BspLI	GGNNCC	1 cut(s)	294
BspMI	ACCTGC	1 cut(s)	272
BspPI	GGATC	2 cut(s)	287, 300
BsrDI	GCAATG	1 cut(s)	435
BsrI	ACTGG	1 cut(s)	312
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	1 cut(s)	292
BssT1I	CCWWGG	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	17
Bst4CI	ACNGT	2 cut(s)	329, 422
Bst6I	CTCTTC	2 cut(s)	320, 471
BstDEI	CTNAG	2 cut(s)	270, 359
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	82
BstKTI	GATC	1 cut(s)	295
BstMAI	GTCTC	1 cut(s)	468
BstMBI	GATC	1 cut(s)	292
BstNI	CCWGG	1 cut(s)	17
BstPAI	GACNNNNGTC	1 cut(s)	460
BstSCI	CCNGG	1 cut(s)	15
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BtgI	CCRYGG	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	82
BveI	ACCTGC	1 cut(s)	272
Cfr13I	GGNCC	1 cut(s)	455
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	2 cut(s)	170, 187
CviJI	RGCY	5 cut(s)	11, 94, 358, 363, 484
CviKI_1	RGCY	5 cut(s)	11, 94, 358, 363, 484
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	2 cut(s)	270, 359
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
Eam1104I	CTCTTC	2 cut(s)	320, 471
EarI	CTCTTC	2 cut(s)	320, 471
Eco130I	CCWWGG	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	455
EcoRII	CCWGG	1 cut(s)	15
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	2 cut(s)	173, 190
FaiI	YATR	6 cut(s)	87, 107, 171, 183, 188, 216
FatI	CATG	2 cut(s)	169, 186
FokI	GGATG	1 cut(s)	89
FspBI	CTAG	2 cut(s)	5, 209
HapII	CCGG	1 cut(s)	97
Hin1II	CATG	2 cut(s)	173, 190
HincII	GTYRAC	1 cut(s)	402
HindII	GTYRAC	1 cut(s)	402
HinfI	GANTC	3 cut(s)	68, 109, 461
HpaII	CCGG	1 cut(s)	97
Hpy166II	GTNNAC	1 cut(s)	402
Hpy188I	TCNGA	1 cut(s)	297
Hpy188III	TCNNGA	4 cut(s)	36, 319, 509, 522
Hpy8I	GTNNAC	1 cut(s)	402
HpyAV	CCTTC	2 cut(s)	390, 446
HpyCH4III	ACNGT	2 cut(s)	329, 422
HpyCH4V	TGCA	6 cut(s)	196, 214, 281, 428, 435, 498
HpyF3I	CTNAG	2 cut(s)	270, 359
Hsp92II	CATG	2 cut(s)	173, 190
Kzo9I	GATC	1 cut(s)	292
LmnI	GCTCC	1 cut(s)	99
LweI	GCATC	2 cut(s)	43, 415
MaeI	CTAG	2 cut(s)	5, 209
MaeIII	GTNAC	1 cut(s)	303
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MboII	GAAGA	4 cut(s)	143, 149, 307, 458
MflI	RGATCY	1 cut(s)	292
MhlI	GDGCHC	1 cut(s)	271
MluCI	AATT	1 cut(s)	27
MlyI	GAGTC	2 cut(s)	62, 470
MnlI	CCTC	2 cut(s)	334, 400
MseI	TTAA	1 cut(s)	390
MslI	CAYNNNNRTG	1 cut(s)	126
MspI	CCGG	1 cut(s)	97
MspR9I	CCNGG	1 cut(s)	17
MvaI	CCWGG	1 cut(s)	17
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	1 cut(s)	292
NlaIII	CATG	2 cut(s)	173, 190
NlaIV	GGNNCC	1 cut(s)	294
OliI	CACNNNNGTG	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	109
PflFI	GACNNNGTC	1 cut(s)	254
PfoI	TCCNGGA	1 cut(s)	15
PleI	GAGTC	2 cut(s)	62, 469
PpsI	GAGTC	2 cut(s)	62, 469
PshAI	GACNNNNGTC	1 cut(s)	460
Psp6I	CCWGG	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	294
PspPI	GGNCC	1 cut(s)	455
PsuI	RGATCY	1 cut(s)	292
PsyI	GACNNNGTC	1 cut(s)	254
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
RseI	CAYNNNNRTG	1 cut(s)	126
SaqAI	TTAA	1 cut(s)	390
Sau3AI	GATC	1 cut(s)	292
Sau96I	GGNCC	1 cut(s)	455
SchI	GAGTC	2 cut(s)	62, 470
ScrFI	CCNGG	1 cut(s)	17
SduI	GDGCHC	1 cut(s)	271
SetI	ASST	8 cut(s)	13, 96, 255, 286, 360, 375, 401, 411
SfaNI	GCATC	2 cut(s)	43, 415
SinI	GGWCC	1 cut(s)	455
SmiMI	CAYNNNNRTG	1 cut(s)	126
Sse9I	AATT	1 cut(s)	27
SsiI	CCGC	1 cut(s)	447
SspMI	CTAG	2 cut(s)	5, 209
StyD4I	CCNGG	1 cut(s)	15
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	2 cut(s)	329, 422
TaqI	TCGA	1 cut(s)	320
TaqII	GACCGA	1 cut(s)	459
TasI	AATT	1 cut(s)	27
TfiI	GAWTC	1 cut(s)	109
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TspDTI	ATGAA	1 cut(s)	122
TspGWI	ACGGA	1 cut(s)	419
Tth111I	GACNNNGTC	1 cut(s)	254
VpaK11BI	GGWCC	1 cut(s)	455
XspI	CTAG	2 cut(s)	5, 209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.