Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000811

Physical Location & Seq

Genomic Coordinates Forward (+)

30019588 .. 30020284

Gene Structure 697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG282200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGCTAGAAGCTCTCTGGGACATTGAAATTGCTTCCAGATTAGTCGGTTTTGATGCTGATAGTGATGACTCTTTGGATGAGAAGTATAAGAAGCTTCGGTGTTGTATGAATCCACTTCCTCACAATAGTGAAGATTATCGGTTGATTGAAAAGTATCTTCTTACTACTCATGCCCCTACACATACGGATTGGAGTCTTGAACTTGAAGAAGTTTTTCACTTGAAAGGGAAGGGGAATTCGATAAATACGCTCCTTGTGATCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0003950 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006464 GO:0006471 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016070 GO:0016740 GO:0016757 GO:0016763 GO:0016874 GO:0016886 GO:0019538 GO:0022616 GO:0033554 GO:0033993 GO:0034641 GO:0034645 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0071704 GO:0090304 GO:0097305 GO:0140097 GO:1901360 GO:1901564 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 map03410 map04210 map04212 map04214 map04217

Pfam Domains

Protein Families

BRCT PADR1 PARP PARP_reg WGR zf-PARP

Protein Analysis

88

Amino Acids

10.17

Weight (kDa)

4.87

Isoelectric Point (pI)

41.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66290 AT5G66290
fragaria_vesca	FvH4_1g12000 FvH4_2g21980
malus_domestica	MD02G1134200.v1.1 MD15G1247200.v1.1
prunus_persica	Prupe.7G166600_v2.0.a1 Prupe.7G166600_v2.0.a1
pyrus_communis	pycom02g10580
rosa_chinensis	RchiOBHm_Chr0c39g0503221 RchiOBHm_Chr1g0353231 RchiOBHm_Chr2g0099641 RchiOBHm_Chr2g0126361 RchiOBHm_Chr5g0080231
rosa_laevigata	RLG00000008117 RLG00000016900 RLG00000021865
rosa_multiflora	Rmu_sc0000394.1_g000010 Rmu_sc0000543.1_g000026 Rmu_sc0005120.1_g000016 Rmu_sc0006325.1_g000056 Rmu_sc0010438.1_g000001 Rmu_sc0035741.1_g000001 Rmu_ssc0000366.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142880 Rroxscaffold_3G00248750 Rroxscaffold_5G00378640 Rroxscaffold_5G00382790 Rroxscaffold_7G00190790
rosa_rugosa	Rorug02G0081700 Rorug02G0258300 Rorug06G0170500
rosa_samantha	Rh1CG034700 Rh1DG035400 Rh2AG131100 Rh2AG189600 Rh2AG189700 Rh2BG134500 Rh2BG230100 Rh2BG328200 Rh2CG135300 Rh2DG135900 Rh2DG196000 Rh2DG196100 Rh2DG196200 Rh3DG312100 Rh4CG305000 Rh4DG111800 Rh5AG369300 Rh5AG496200 Rh5AG496300 Rh5BG555300 Rh5CG578200 Rh5DG254100 Rh5DG254200 Rh6BG167500 Rh6BG167600 Rh6BG241100 Rh7AG282200 Rh7CG301400 Rh7CG301500 Rh7DG435700 Rh7DG435800
rosa_wichuraiana	Rw0G008970 Rw2G010150 Rw3G024850 Rw4G013560 Rw5G022800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	235
AgsI	TTSAA	5 cut(s)	26, 149, 200, 206, 223
AleI	CACNNNNGTG	1 cut(s)	126
AluBI	AGCT	2 cut(s)	11, 94
AluI	AGCT	2 cut(s)	11, 94
ApoI	RAATTY	1 cut(s)	235
Asp700I	GAANNNNTTC	1 cut(s)	213
BclI	TGATCA	1 cut(s)	258
BfaI	CTAG	1 cut(s)	5
BmsI	GCATC	1 cut(s)	43
BseGI	GGATG	1 cut(s)	82
BslFI	GGGAC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	32
Bsp143I	GATC	1 cut(s)	258
BssMI	GATC	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	82
BstKTI	GATC	1 cut(s)	261
BstMBI	GATC	1 cut(s)	258
BtsCI	GGATG	1 cut(s)	82
CviAII	CATG	1 cut(s)	170
CviJI	RGCY	2 cut(s)	11, 94
CviKI_1	RGCY	2 cut(s)	11, 94
DpnI	GATC	1 cut(s)	260
DpnII	GATC	1 cut(s)	258
EcoRI	GAATTC	1 cut(s)	235
FaeI	CATG	1 cut(s)	173
FaiI	YATR	4 cut(s)	87, 107, 171, 183
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	1 cut(s)	169
FbaI	TGATCA	1 cut(s)	258
FokI	GGATG	1 cut(s)	89
FspBI	CTAG	1 cut(s)	5
Hin1II	CATG	1 cut(s)	173
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	3 cut(s)	68, 109, 193
Hpy188III	TCNNGA	2 cut(s)	36, 197
HpyAV	CCTTC	1 cut(s)	223
Hsp92II	CATG	1 cut(s)	173
Ksp22I	TGATCA	1 cut(s)	258
Kzo9I	GATC	1 cut(s)	258
LmnI	GCTCC	1 cut(s)	255
LpnPI	CCDG	1 cut(s)	49
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	1 cut(s)	5
MalI	GATC	1 cut(s)	260
MboI	GATC	1 cut(s)	258
MboII	GAAGA	3 cut(s)	143, 149, 218
MluCI	AATT	2 cut(s)	27, 235
MlyI	GAGTC	2 cut(s)	62, 202
MnlI	CCTC	1 cut(s)	129
MroXI	GAANNNNTTC	1 cut(s)	213
MslI	CAYNNNNRTG	1 cut(s)	126
NdeII	GATC	1 cut(s)	258
NlaIII	CATG	1 cut(s)	173
OliI	CACNNNNGTG	1 cut(s)	126
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	109
PleI	GAGTC	2 cut(s)	62, 201
PpsI	GAGTC	2 cut(s)	62, 201
RseI	CAYNNNNRTG	1 cut(s)	126
Sau3AI	GATC	1 cut(s)	258
SchI	GAGTC	2 cut(s)	62, 202
SetI	ASST	2 cut(s)	13, 96
SfaNI	GCATC	1 cut(s)	43
SgeI	CNNG	7 cut(s)	17, 28, 48, 182, 209, 215, 232
SmiMI	CAYNNNNRTG	1 cut(s)	126
Sse9I	AATT	2 cut(s)	27, 235
SspMI	CTAG	1 cut(s)	5
TaqI	TCGA	1 cut(s)	239
TasI	AATT	2 cut(s)	27, 235
TfiI	GAWTC	1 cut(s)	109
TspDTI	ATGAA	1 cut(s)	122
TspGWI	ACGGA	1 cut(s)	200
XapI	RAATTY	1 cut(s)	235
XmnI	GAANNNNTTC	1 cut(s)	213
XspI	CTAG	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.