Rmu_sc0010438.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010438.1
OG0000811
Physical Location & Seq
Forward (+)
1 .. 1537
1537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010438.1_g000001.1.cds

Sequence Viewer

Length: 342 bp
gaagagatagagaacaagatagaaattgcggacgcgttgtctgttaaacttaagcaacgttttaattattcagtgacaacaatgaagacatcctcgcaacatttatgtggagttcatgcactgcaggtagagattggggaacttaaaggaaggttgacggaggttattagcaactgtgatgcagtgtgcaagagaatatccgcagaaggaccagagtctcttcggtcatctgtcaagcctttggttatctgcactgcacaccaagaacaccaatctgcctcgtctgatctacaaagagatccaaccccaagtctaccttctacagaaaccaagttggactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.4

Weight (kDa)

5.8

Isoelectric Point (pI)

62.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 115
AccI GTMKAC 1 cut(s) 313
AccII CGCG 1 cut(s) 35
AciI CCGC 2 cut(s) 29, 201
AclI AACGTT 1 cut(s) 58
AclWI GGATC 1 cut(s) 293
AflII CTTAAG 1 cut(s) 50
AflIII ACRYGT 1 cut(s) 33
AhdI GACNNNNNGTC 1 cut(s) 37
AjuI GAANNNNNNNTTGG 2 cut(s) 301, 333
Alw26I GTCTC 1 cut(s) 222
AlwI GGATC 1 cut(s) 293
AspS9I GGNCC 1 cut(s) 209
AvaII GGWCC 1 cut(s) 209
BbsI GAAGAC 1 cut(s) 92
BcoDI GTCTC 1 cut(s) 222
BfmI CTRYAG 2 cut(s) 122, 321
BfrI CTTAAG 1 cut(s) 50
BfuAI ACCTGC 1 cut(s) 115
Bme18I GGWCC 1 cut(s) 209
BmeRI GACNNNNNGTC 1 cut(s) 37
BmgT120I GGNCC 1 cut(s) 209
BmsI GCATC 1 cut(s) 169
BoxI GACNNNNGTC 1 cut(s) 214
BpiI GAAGAC 1 cut(s) 92
BseGI GGATG 1 cut(s) 89
BsgI GTGCAG 2 cut(s) 235, 240
Bsh1236I CGCG 1 cut(s) 35
BsmAI GTCTC 1 cut(s) 222
Bsp143I GATC 2 cut(s) 286, 298
BspACI CCGC 2 cut(s) 29, 201
BspFNI CGCG 1 cut(s) 35
BspMAI CTGCAG 1 cut(s) 126
BspMI ACCTGC 1 cut(s) 115
BspPI GGATC 1 cut(s) 293
BspTI CTTAAG 1 cut(s) 50
BssMI GATC 2 cut(s) 286, 298
Bst4CI ACNGT 1 cut(s) 176
Bst6I CTCTTC 1 cut(s) 225
BstAFI CTTAAG 1 cut(s) 50
BstF5I GGATG 1 cut(s) 89
BstFNI CGCG 1 cut(s) 35
BstKTI GATC 2 cut(s) 289, 301
BstMAI GTCTC 1 cut(s) 222
BstMBI GATC 2 cut(s) 286, 298
BstPAI GACNNNNGTC 1 cut(s) 214
BstSFI CTRYAG 2 cut(s) 122, 321
BstUI CGCG 1 cut(s) 35
BstV2I GAAGAC 1 cut(s) 92
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
BtsCI GGATG 1 cut(s) 89
BtsI GCAGTG 3 cut(s) 119, 189, 252
BtsIMutI CAGTG 4 cut(s) 78, 119, 189, 252
BveI ACCTGC 1 cut(s) 115
Cfr13I GGNCC 1 cut(s) 209
CseI GACGC 1 cut(s) 41
CviAII CATG 1 cut(s) 116
CviJI RGCY 1 cut(s) 238
CviKI_1 RGCY 1 cut(s) 238
DpnI GATC 2 cut(s) 288, 300
DpnII GATC 2 cut(s) 286, 298
DriI GACNNNNNGTC 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 225
Eam1105I GACNNNNNGTC 1 cut(s) 37
EarI CTCTTC 1 cut(s) 225
Eco47I GGWCC 1 cut(s) 209
FaeI CATG 1 cut(s) 119
FaiI YATR 2 cut(s) 106, 117
FalI AAGNNNNNCTT 2 cut(s) 301, 333
FatI CATG 1 cut(s) 115
FblI GTMKAC 1 cut(s) 313
FokI GGATG 1 cut(s) 76
HgaI GACGC 1 cut(s) 41
Hin1II CATG 1 cut(s) 119
HincII GTYRAC 1 cut(s) 156
HindII GTYRAC 1 cut(s) 156
HinfI GANTC 1 cut(s) 215
Hpy166II GTNNAC 2 cut(s) 156, 314
Hpy188I TCNGA 1 cut(s) 286
Hpy8I GTNNAC 2 cut(s) 156, 314
HpyAV CCTTC 3 cut(s) 144, 200, 327
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 6 cut(s) 119, 124, 182, 189, 252, 257
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 1 cut(s) 119
Kzo9I GATC 2 cut(s) 286, 298
LpnPI CCDG 2 cut(s) 110, 225
LweI GCATC 1 cut(s) 169
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 1 cut(s) 73
MalI GATC 2 cut(s) 288, 300
MboI GATC 2 cut(s) 286, 298
MboII GAAGA 3 cut(s) 14, 97, 212
MflI RGATCY 1 cut(s) 298
MluCI AATT 2 cut(s) 24, 64
MluI ACGCGT 1 cut(s) 33
MlyI GAGTC 1 cut(s) 224
MmeI TCCRAC 2 cut(s) 315, 326
MnlI CCTC 3 cut(s) 103, 154, 289
MseI TTAA 4 cut(s) 45, 51, 63, 144
MslI CAYNNNNRTG 1 cut(s) 105
MspCI CTTAAG 1 cut(s) 50
MvnI CGCG 1 cut(s) 35
NdeII GATC 2 cut(s) 286, 298
NlaIII CATG 1 cut(s) 119
NmuCI GTSAC 1 cut(s) 73
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
PshAI GACNNNNGTC 1 cut(s) 214
Psp1406I AACGTT 1 cut(s) 58
PspPI GGNCC 1 cut(s) 209
PstI CTGCAG 1 cut(s) 126
PsuI RGATCY 1 cut(s) 298
RseI CAYNNNNRTG 1 cut(s) 105
SaqAI TTAA 4 cut(s) 45, 51, 63, 144
Sau3AI GATC 2 cut(s) 286, 298
Sau96I GGNCC 1 cut(s) 209
SchI GAGTC 1 cut(s) 224
SetI ASST 5 cut(s) 61, 129, 155, 165, 319
SfaNI GCATC 1 cut(s) 169
SfcI CTRYAG 2 cut(s) 122, 321
SinI GGWCC 1 cut(s) 209
SmiMI CAYNNNNRTG 1 cut(s) 105
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 2 cut(s) 24, 64
SsiI CCGC 2 cut(s) 29, 201
TaaI ACNGT 1 cut(s) 176
TaiI ACGT 1 cut(s) 61
TaqII GACCGA 1 cut(s) 213
TasI AATT 2 cut(s) 24, 64
Tru1I TTAA 4 cut(s) 45, 51, 63, 144
Tru9I TTAA 4 cut(s) 45, 51, 63, 144
TscAI CASTG 4 cut(s) 78, 126, 189, 259
TseFI GTSAC 1 cut(s) 73
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 2 cut(s) 98, 104
TspGWI ACGGA 1 cut(s) 173
TspRI CASTG 4 cut(s) 78, 126, 189, 259
Vha464I CTTAAG 1 cut(s) 50
VpaK11BI GGWCC 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.