Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006325.1

Orthogroup ID

OG0000811

Physical Location & Seq

Genomic Coordinates Reverse (-)

233489 .. 235270

Gene Structure 1782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006325.1_g000056.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atgccagagcttgctgaggttgatgcggctggtcttcatttctacaacaactgctatcaggttaagcccagtggagaccttctttggcggatgcagaatgacgacggtggctggggactacacaacgaaggtcacagcaccatgttcagcatagctctcagctatatttgtatgtgtattctcggagaaggacctgatgatgggggccaagacaatgcttgtccaagagctagaaagtggattcttgatcatgatggtgtcacacacatgccttcttggggaaagacttggctttcgtaccagacatctgttccaaaatgggaaccgatgtctgtaacagtaccagacatctgttccaaaatgggaaccgattaccagacatctgttccaaaatgggaaccgatgtctgtaacagtaccagacatctgttccaaaatgggaaccgattaccagacatctgttccaaaatgggaaccgatgtctgtaacagtaccagacatctgttccaaaatgggaaccgattaccagacatctgttccaaaatgggaaccgatgtctgtaacagtatcagtcatcggttcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0019742 GO:0019745 GO:0031559 GO:0042300 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

194

Amino Acids

21.56

Weight (kDa)

4.74

Isoelectric Point (pI)

44.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66290 AT5G66290
fragaria_vesca	FvH4_1g12000 FvH4_2g21980
malus_domestica	MD02G1134200.v1.1 MD15G1247200.v1.1
prunus_persica	Prupe.7G166600_v2.0.a1 Prupe.7G166600_v2.0.a1
pyrus_communis	pycom02g10580
rosa_chinensis	RchiOBHm_Chr0c39g0503221 RchiOBHm_Chr1g0353231 RchiOBHm_Chr2g0099641 RchiOBHm_Chr2g0126361 RchiOBHm_Chr5g0080231
rosa_laevigata	RLG00000008117 RLG00000016900 RLG00000021865
rosa_multiflora	Rmu_sc0000394.1_g000010 Rmu_sc0000543.1_g000026 Rmu_sc0005120.1_g000016 Rmu_sc0006325.1_g000056 Rmu_sc0010438.1_g000001 Rmu_sc0035741.1_g000001 Rmu_ssc0000366.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142880 Rroxscaffold_3G00248750 Rroxscaffold_5G00378640 Rroxscaffold_5G00382790 Rroxscaffold_7G00190790
rosa_rugosa	Rorug02G0081700 Rorug02G0258300 Rorug06G0170500
rosa_samantha	Rh1CG034700 Rh1DG035400 Rh2AG131100 Rh2AG189600 Rh2AG189700 Rh2BG134500 Rh2BG230100 Rh2BG328200 Rh2CG135300 Rh2DG135900 Rh2DG196000 Rh2DG196100 Rh2DG196200 Rh3DG312100 Rh4CG305000 Rh4DG111800 Rh5AG369300 Rh5AG496200 Rh5AG496300 Rh5BG555300 Rh5CG578200 Rh5DG254100 Rh5DG254200 Rh6BG167500 Rh6BG167600 Rh6BG241100 Rh7AG282200 Rh7CG301400 Rh7CG301500 Rh7DG435700 Rh7DG435800
rosa_wichuraiana	Rw0G008970 Rw2G010150 Rw3G024850 Rw4G013560 Rw5G022800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	26, 88
AfaI	GTAC	4 cut(s)	299, 342, 417, 492
AfiI	CCNNNNNNNGG	2 cut(s)	200, 278
AluBI	AGCT	4 cut(s)	10, 155, 162, 230
AluI	AGCT	4 cut(s)	10, 155, 162, 230
Alw26I	GTCTC	1 cut(s)	69
AoxI	GGCC	1 cut(s)	205
ArsI	GACNNNNNNTTYG	2 cut(s)	277, 309
AspS9I	GGNCC	2 cut(s)	191, 205
AvaII	GGWCC	1 cut(s)	191
BbsI	GAAGAC	1 cut(s)	26
BbvCI	CCTCAGC	1 cut(s)	15
BccI	CCATC	2 cut(s)	194, 248
BclI	TGATCA	1 cut(s)	247
BcoDI	GTCTC	1 cut(s)	69
BfaI	CTAG	1 cut(s)	231
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	191, 205
BmiI	GGNNCC	8 cut(s)	206, 324, 367, 399, 442, 474, 517, 549
BmrI	ACTGGG	1 cut(s)	63
BmsI	GCATC	2 cut(s)	13, 81
BmuI	ACTGGG	1 cut(s)	63
BpiI	GAAGAC	1 cut(s)	26
Bpu10I	CCTNAGC	1 cut(s)	15
BsaI	GGTCTC	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 278
Bse1I	ACTGG	1 cut(s)	69
BseGI	GGATG	1 cut(s)	96
BseLI	CCNNNNNNNGG	2 cut(s)	200, 278
BseMII	CTCAG	2 cut(s)	6, 172
BseNI	ACTGG	1 cut(s)	69
BseYI	CCCAGC	1 cut(s)	111
BshFI	GGCC	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	129
BslI	CCNNNNNNNGG	2 cut(s)	200, 278
BsmAI	GTCTC	1 cut(s)	69
BsmFI	GGGAC	1 cut(s)	129
BsnI	GGCC	1 cut(s)	207
Bso31I	GGTCTC	1 cut(s)	69
Bsp143I	GATC	1 cut(s)	247
BspACI	CCGC	2 cut(s)	26, 88
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	2 cut(s)	7, 171
BspHI	TCATGA	1 cut(s)	250
BspLI	GGNNCC	8 cut(s)	206, 324, 367, 399, 442, 474, 517, 549
BspTNI	GGTCTC	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	69
BssMI	GATC	1 cut(s)	247
Bst4CI	ACNGT	5 cut(s)	107, 340, 415, 490, 565
BstC8I	GCNNGC	1 cut(s)	12
BstDEI	CTNAG	2 cut(s)	15, 158
BstF5I	GGATG	1 cut(s)	96
BstKTI	GATC	1 cut(s)	250
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	1 cut(s)	247
BstNSI	RCATGY	1 cut(s)	271
BstV2I	GAAGAC	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	207
BtsCI	GGATG	1 cut(s)	96
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	12
CciI	TCATGA	1 cut(s)	250
Cfr13I	GGNCC	2 cut(s)	191, 205
Csp6I	GTAC	4 cut(s)	298, 341, 416, 491
CviAII	CATG	3 cut(s)	142, 251, 268
CviJI	RGCY	9 cut(s)	10, 29, 67, 111, 155, 162, 207, 230, 292
CviKI_1	RGCY	9 cut(s)	10, 29, 67, 111, 155, 162, 207, 230, 292
CviQI	GTAC	4 cut(s)	298, 341, 416, 491
DdeI	CTNAG	2 cut(s)	15, 158
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
EciI	GGCGGA	1 cut(s)	103
Eco31I	GGTCTC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	191
EcoO109I	RGGNCCY	1 cut(s)	191
FaeI	CATG	3 cut(s)	145, 254, 271
FaiI	YATR	6 cut(s)	143, 152, 165, 173, 252, 269
FaqI	GGGAC	1 cut(s)	129
FatI	CATG	3 cut(s)	141, 250, 267
FbaI	TGATCA	1 cut(s)	247
Fnu4HI	GCNGC	1 cut(s)	27
FokI	GGATG	1 cut(s)	103
Fsp4HI	GCNGC	1 cut(s)	27
FspBI	CTAG	1 cut(s)	231
GluI	GCNGC	1 cut(s)	27
GsaI	CCCAGC	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	207
Hin1II	CATG	3 cut(s)	145, 254, 271
HinfI	GANTC	1 cut(s)	241
Hpy188I	TCNGA	1 cut(s)	185
Hpy188III	TCNNGA	2 cut(s)	245, 251
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	4 cut(s)	89, 122, 182, 282
HpyCH4III	ACNGT	5 cut(s)	107, 340, 415, 490, 565
HpyCH4V	TGCA	1 cut(s)	94
HpyF3I	CTNAG	2 cut(s)	15, 158
Hsp92II	CATG	3 cut(s)	145, 254, 271
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	1 cut(s)	247
LweI	GCATC	2 cut(s)	13, 81
MaeI	CTAG	1 cut(s)	231
MaeIII	GTNAC	6 cut(s)	131, 259, 334, 409, 484, 559
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MboII	GAAGA	1 cut(s)	26
MnlI	CCTC	1 cut(s)	10
MseI	TTAA	2 cut(s)	63, 583
MslI	CAYNNNNRTG	2 cut(s)	255, 266
NdeII	GATC	1 cut(s)	247
NlaIII	CATG	3 cut(s)	145, 254, 271
NlaIV	GGNNCC	8 cut(s)	206, 324, 367, 399, 442, 474, 517, 549
NmuCI	GTSAC	2 cut(s)	131, 259
NspI	RCATGY	1 cut(s)	271
PagI	TCATGA	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	241
PkrI	GCNGC	1 cut(s)	28
PpuMI	RGGWCCY	1 cut(s)	191
Psp5II	RGGWCCY	1 cut(s)	191
PspFI	CCCAGC	1 cut(s)	111
PspN4I	GGNNCC	8 cut(s)	206, 324, 367, 399, 442, 474, 517, 549
PspPI	GGNCC	2 cut(s)	191, 205
PspPPI	RGGWCCY	1 cut(s)	191
RsaI	GTAC	4 cut(s)	299, 342, 417, 492
RsaNI	GTAC	4 cut(s)	298, 341, 416, 491
RseI	CAYNNNNRTG	2 cut(s)	255, 266
SaqAI	TTAA	2 cut(s)	63, 583
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	1 cut(s)	247
Sau96I	GGNCC	2 cut(s)	191, 205
SetI	ASST	9 cut(s)	12, 21, 63, 81, 133, 157, 164, 196, 232
SfaNI	GCATC	2 cut(s)	13, 81
SinI	GGWCC	1 cut(s)	191
SmiMI	CAYNNNNRTG	2 cut(s)	255, 266
SsiI	CCGC	2 cut(s)	26, 88
SspMI	CTAG	1 cut(s)	231
TaaI	ACNGT	5 cut(s)	107, 340, 415, 490, 565
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	241
Tru1I	TTAA	2 cut(s)	63, 583
Tru9I	TTAA	2 cut(s)	63, 583
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	2 cut(s)	131, 259
Tsp45I	GTSAC	2 cut(s)	131, 259
TspDTI	ATGAA	1 cut(s)	26
TspRI	CASTG	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	191
XceI	RCATGY	1 cut(s)	271
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.