Rh2CG135300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000811
Physical Location & Seq
Reverse (-)
12023490 .. 12031683
8194 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG135300.1

Sequence Viewer

Length: 645 bp
ATGGGTGCCACAGAATCCTCACTCTCGAGCTCACAGAGGCGGCCGGGCGATGAAATCACGACGGTGTCTGAGCGATCGGAGGTGGCCGATCCTATATTAGAGAGGCTCAGGTCCCTAAGAATTTCGACGCCATTACTGACTTCACCCCCAAGTGAGGGTAGCTTGACTGACATTTTAGTGAGGAAACCTTCGTCTTCTTCAGCTCCCAGTATTGTGGATCCGAAAGTGTTACTGGAACTCTTCTCGATGTACCGTGAGTGGCAGGAGGAGAATGTCAAAAAGCTGAGCCAAAAACAGGAAGAGATAGAGAACAAGATAGAAATTGCGGACGCGTTGTCTGTTAAACTTAAGCAACGTTTTAATTATTCAGTGACAGCAATGAAGACATCCTCGCAACATTTATGTGGAGTTCATGCACTGCAGGTAGAGATTGGGGAACTTAAAGGAAGGTTGACGGAGGTTATTAGCAACTGTGATGCAGTGTGCAAGAGAATATCCGCAGAAGGACCAGAGTCTCTTCGGTCATCTGTCAAGCCTTTGGTTATCTGCACTGCACACCAAGAACACCAATCTGCCTCGTCTGATCTACAAATAGATCCAACCCCAAGTCTACCTTCTACAGAAACCAATTTACAGGCGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

23.48

Weight (kDa)

5.5

Isoelectric Point (pI)

70.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 412
AccB1I GGYRCC 1 cut(s) 5
AccI GTMKAC 1 cut(s) 610
AccII CGCG 1 cut(s) 332
AciI CCGC 3 cut(s) 40, 326, 498
AclI AACGTT 1 cut(s) 355
AclWI GGATC 4 cut(s) 83, 212, 225, 590
AcoI YGGCCR 2 cut(s) 41, 84
AcsI RAATTY 1 cut(s) 120
AcuI CTGAAG 1 cut(s) 183
AcyI GRCGYC 1 cut(s) 128
AfaI GTAC 1 cut(s) 251
AfiI CCNNNNNNNGG 3 cut(s) 154, 155, 295
AflII CTTAAG 1 cut(s) 347
AflIII ACRYGT 1 cut(s) 330
AhdI GACNNNNNGTC 1 cut(s) 334
AjuI GAANNNNNNNTTGG 2 cut(s) 598, 630
AleI CACNNNNGTG 1 cut(s) 62
AluBI AGCT 4 cut(s) 30, 162, 203, 283
AluI AGCT 4 cut(s) 30, 162, 203, 283
Alw21I GWGCWC 1 cut(s) 32
Alw26I GTCTC 1 cut(s) 519
AlwI GGATC 4 cut(s) 83, 212, 225, 590
Ama87I CYCGRG 1 cut(s) 25
AoxI GGCC 2 cut(s) 41, 84
ApoI RAATTY 1 cut(s) 120
AspS9I GGNCC 2 cut(s) 111, 506
AsuC2I CCSGG 1 cut(s) 45
AsuHPI GGTGA 1 cut(s) 135
AvaI CYCGRG 1 cut(s) 25
AvaII GGWCC 2 cut(s) 111, 506
BamHI GGATCC 1 cut(s) 217
BanI GGYRCC 1 cut(s) 5
BanII GRGCYC 1 cut(s) 32
BbsI GAAGAC 2 cut(s) 186, 389
Bbv12I GWGCWC 1 cut(s) 32
BcnI CCSGG 1 cut(s) 45
BcoDI GTCTC 1 cut(s) 519
BfmI CTRYAG 2 cut(s) 419, 618
BfrI CTTAAG 1 cut(s) 347
BfuAI ACCTGC 1 cut(s) 412
BisI GCNGC 1 cut(s) 41
BlpI GCTNAGC 1 cut(s) 284
BlsI GCNGC 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 45
Bme18I GGWCC 2 cut(s) 111, 506
BmeRI GACNNNNNGTC 1 cut(s) 334
BmeT110I CYCGRG 1 cut(s) 25
BmgT120I GGNCC 2 cut(s) 111, 506
BmiI GGNNCC 3 cut(s) 7, 113, 219
BmrFI CCNGG 1 cut(s) 45
BmrI ACTGGG 1 cut(s) 201
BmsI GCATC 1 cut(s) 466
BmuI ACTGGG 1 cut(s) 201
BoxI GACNNNNGTC 1 cut(s) 511
BpiI GAAGAC 2 cut(s) 186, 389
Bpu10I CCTNAGC 1 cut(s) 107
Bpu1102I GCTNAGC 1 cut(s) 284
BpuMI CCSGG 1 cut(s) 45
BsaHI GRCGYC 1 cut(s) 128
Bsc4I CCNNNNNNNGG 3 cut(s) 154, 155, 295
Bse1I ACTGG 2 cut(s) 207, 237
Bse3DI GCAATG 1 cut(s) 384
BseGI GGATG 1 cut(s) 386
BseLI CCNNNNNNNGG 3 cut(s) 154, 155, 295
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 3 cut(s) 60, 121, 275
BseNI ACTGG 2 cut(s) 207, 237
BseRI GAGGAG 1 cut(s) 281
BseX3I CGGCCG 1 cut(s) 41
BsgI GTGCAG 2 cut(s) 532, 537
Bsh1236I CGCG 1 cut(s) 332
Bsh1285I CGRYCG 2 cut(s) 44, 77
BshFI GGCC 2 cut(s) 43, 86
BshNI GGYRCC 1 cut(s) 5
BsiEI CGRYCG 2 cut(s) 44, 77
BsiHKAI GWGCWC 1 cut(s) 32
BsiHKCI CYCGRG 1 cut(s) 25
BsiSI CCGG 1 cut(s) 44
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 3 cut(s) 154, 155, 295
BsmAI GTCTC 1 cut(s) 519
BsmFI GGGAC 1 cut(s) 97
BsnI GGCC 2 cut(s) 43, 86
BsoBI CYCGRG 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 32
Bsp143I GATC 5 cut(s) 74, 88, 217, 583, 595
Bsp1720I GCTNAGC 1 cut(s) 284
BspACI CCGC 3 cut(s) 40, 326, 498
BspANI GGCC 2 cut(s) 43, 86
BspCNI CTCAG 3 cut(s) 61, 120, 276
BspFNI CGCG 1 cut(s) 332
BspLI GGNNCC 3 cut(s) 7, 113, 219
BspMAI CTGCAG 1 cut(s) 423
BspMI ACCTGC 1 cut(s) 412
BspPI GGATC 4 cut(s) 83, 212, 225, 590
BspT107I GGYRCC 1 cut(s) 5
BspTI CTTAAG 1 cut(s) 347
BsrDI GCAATG 1 cut(s) 384
BsrI ACTGG 2 cut(s) 207, 237
BssMI GATC 5 cut(s) 74, 88, 217, 583, 595
BssNI GRCGYC 1 cut(s) 128
Bst4CI ACNGT 3 cut(s) 64, 254, 473
Bst6I CTCTTC 3 cut(s) 245, 294, 522
BstACI GRCGYC 1 cut(s) 128
BstAFI CTTAAG 1 cut(s) 347
BstDEI CTNAG 4 cut(s) 69, 107, 116, 284
BstF5I GGATG 1 cut(s) 386
BstFNI CGCG 1 cut(s) 332
BstKTI GATC 5 cut(s) 77, 91, 220, 586, 598
BstMAI GTCTC 1 cut(s) 519
BstMBI GATC 5 cut(s) 74, 88, 217, 583, 595
BstMCI CGRYCG 2 cut(s) 44, 77
BstPAI GACNNNNGTC 1 cut(s) 511
BstSCI CCNGG 1 cut(s) 43
BstSFI CTRYAG 2 cut(s) 419, 618
BstUI CGCG 1 cut(s) 332
BstV2I GAAGAC 2 cut(s) 186, 389
BstX2I RGATCY 2 cut(s) 217, 595
BstXI CCANNNNNNTGG 1 cut(s) 214
BstYI RGATCY 2 cut(s) 217, 595
BstZI CGGCCG 1 cut(s) 41
BsuRI GGCC 2 cut(s) 43, 86
BtgZI GCGATG 1 cut(s) 63
BtsCI GGATG 1 cut(s) 386
BtsI GCAGTG 3 cut(s) 416, 486, 549
BtsIMutI CAGTG 4 cut(s) 375, 416, 486, 549
BveI ACCTGC 1 cut(s) 412
Cfr13I GGNCC 2 cut(s) 111, 506
CseI GACGC 2 cut(s) 136, 338
Csp6I GTAC 1 cut(s) 250
CviAII CATG 1 cut(s) 413
CviJI RGCY 9 cut(s) 30, 43, 86, 106, 162, 203, 283, 288, 535
CviKI_1 RGCY 9 cut(s) 30, 43, 86, 106, 162, 203, 283, 288, 535
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 4 cut(s) 69, 107, 116, 284
DpnI GATC 5 cut(s) 76, 90, 219, 585, 597
DpnII GATC 5 cut(s) 74, 88, 217, 583, 595
DriI GACNNNNNGTC 1 cut(s) 334
EaeI YGGCCR 2 cut(s) 41, 84
EagI CGGCCG 1 cut(s) 41
Eam1104I CTCTTC 3 cut(s) 245, 294, 522
Eam1105I GACNNNNNGTC 1 cut(s) 334
EarI CTCTTC 3 cut(s) 245, 294, 522
Ecl136II GAGCTC 1 cut(s) 30
EclXI CGGCCG 1 cut(s) 41
Eco24I GRGCYC 1 cut(s) 32
Eco47I GGWCC 2 cut(s) 111, 506
Eco52I CGGCCG 1 cut(s) 41
Eco53kI GAGCTC 1 cut(s) 30
Eco57I CTGAAG 1 cut(s) 183
Eco88I CYCGRG 1 cut(s) 25
EcoICRI GAGCTC 1 cut(s) 30
EcoO109I RGGNCCY 1 cut(s) 111
EcoT38I GRGCYC 1 cut(s) 32
FaeI CATG 1 cut(s) 416
FaiI YATR 3 cut(s) 95, 403, 414
FalI AAGNNNNNCTT 2 cut(s) 598, 630
FaqI GGGAC 1 cut(s) 97
FatI CATG 1 cut(s) 412
FblI GTMKAC 1 cut(s) 610
Fnu4HI GCNGC 1 cut(s) 41
FokI GGATG 1 cut(s) 373
FriOI GRGCYC 1 cut(s) 32
Fsp4HI GCNGC 1 cut(s) 41
GluI GCNGC 1 cut(s) 41
HaeIII GGCC 2 cut(s) 43, 86
HapII CCGG 1 cut(s) 44
HgaI GACGC 2 cut(s) 136, 338
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 1 cut(s) 416
HincII GTYRAC 1 cut(s) 453
HindII GTYRAC 1 cut(s) 453
HinfI GANTC 2 cut(s) 14, 512
HpaII CCGG 1 cut(s) 44
HphI GGTGA 1 cut(s) 135
Hpy166II GTNNAC 2 cut(s) 453, 611
Hpy188I TCNGA 4 cut(s) 70, 79, 222, 583
Hpy188III TCNNGA 3 cut(s) 25, 58, 244
Hpy8I GTNNAC 2 cut(s) 453, 611
Hpy99I CGWCG 2 cut(s) 64, 130
HpyAV CCTTC 4 cut(s) 198, 441, 497, 624
HpyCH4III ACNGT 3 cut(s) 64, 254, 473
HpyCH4IV ACGT 1 cut(s) 355
HpyCH4V TGCA 6 cut(s) 416, 421, 479, 486, 549, 554
HpyF3I CTNAG 4 cut(s) 69, 107, 116, 284
HpySE526I ACGT 1 cut(s) 355
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 1 cut(s) 416
Kzo9I GATC 5 cut(s) 74, 88, 217, 583, 595
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 9 cut(s) 57, 94, 218, 220, 248, 281, 407, 522, 620
LweI GCATC 1 cut(s) 466
MaeII ACGT 1 cut(s) 355
MaeIII GTNAC 2 cut(s) 228, 370
MalI GATC 5 cut(s) 76, 90, 219, 585, 597
MboI GATC 5 cut(s) 74, 88, 217, 583, 595
MboII GAAGA 6 cut(s) 186, 189, 232, 311, 394, 509
MflI RGATCY 2 cut(s) 217, 595
MhlI GDGCHC 1 cut(s) 32
MluCI AATT 5 cut(s) 120, 321, 361, 628, 640
MluI ACGCGT 1 cut(s) 330
MlyI GAGTC 1 cut(s) 521
MmeI TCCRAC 1 cut(s) 623
MseI TTAA 4 cut(s) 342, 348, 360, 441
MslI CAYNNNNRTG 3 cut(s) 62, 176, 402
MspCI CTTAAG 1 cut(s) 347
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 1 cut(s) 45
MvnI CGCG 1 cut(s) 332
NciI CCSGG 1 cut(s) 45
NdeII GATC 5 cut(s) 74, 88, 217, 583, 595
NlaIII CATG 1 cut(s) 416
NlaIV GGNNCC 3 cut(s) 7, 113, 219
NmuCI GTSAC 1 cut(s) 370
OliI CACNNNNGTG 1 cut(s) 62
PaeR7I CTCGAG 1 cut(s) 25
PfeI GAWTC 1 cut(s) 14
PflFI GACNNNGTC 1 cut(s) 64
PkrI GCNGC 1 cut(s) 42
Ple19I CGATCG 1 cut(s) 77
PleI GAGTC 1 cut(s) 520
PpsI GAGTC 1 cut(s) 520
PpuMI RGGWCCY 1 cut(s) 111
PshAI GACNNNNGTC 1 cut(s) 511
Psp124BI GAGCTC 1 cut(s) 32
Psp1406I AACGTT 1 cut(s) 355
Psp5II RGGWCCY 1 cut(s) 111
PspN4I GGNNCC 3 cut(s) 7, 113, 219
PspPI GGNCC 2 cut(s) 111, 506
PspPPI RGGWCCY 1 cut(s) 111
PstI CTGCAG 1 cut(s) 423
PsuI RGATCY 2 cut(s) 217, 595
PsyI GACNNNGTC 1 cut(s) 64
PvuI CGATCG 1 cut(s) 77
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
RseI CAYNNNNRTG 3 cut(s) 62, 176, 402
SacI GAGCTC 1 cut(s) 32
SaqAI TTAA 4 cut(s) 342, 348, 360, 441
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 5 cut(s) 74, 88, 217, 583, 595
Sau96I GGNCC 2 cut(s) 111, 506
SchI GAGTC 1 cut(s) 521
ScrFI CCNGG 1 cut(s) 45
SduI GDGCHC 1 cut(s) 32
SfaNI GCATC 1 cut(s) 466
SfcI CTRYAG 2 cut(s) 419, 618
Sfr274I CTCGAG 1 cut(s) 25
SinI GGWCC 2 cut(s) 111, 506
SlaI CTCGAG 1 cut(s) 25
SmiMI CAYNNNNRTG 3 cut(s) 62, 176, 402
SmlI CTYRAG 2 cut(s) 25, 347
SmoI CTYRAG 2 cut(s) 25, 347
Sse9I AATT 5 cut(s) 120, 321, 361, 628, 640
SsiI CCGC 3 cut(s) 40, 326, 498
SstI GAGCTC 1 cut(s) 32
StyD4I CCNGG 1 cut(s) 43
TaaI ACNGT 3 cut(s) 64, 254, 473
TaiI ACGT 1 cut(s) 358
TaqI TCGA 3 cut(s) 26, 125, 245
TaqII GACCGA 1 cut(s) 510
TasI AATT 5 cut(s) 120, 321, 361, 628, 640
TauI GCSGC 1 cut(s) 43
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 4 cut(s) 342, 348, 360, 441
Tru9I TTAA 4 cut(s) 342, 348, 360, 441
TscAI CASTG 4 cut(s) 375, 423, 486, 556
TseFI GTSAC 1 cut(s) 370
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 3 cut(s) 66, 395, 401
TspGWI ACGGA 1 cut(s) 470
TspRI CASTG 4 cut(s) 375, 423, 486, 556
Tth111I GACNNNGTC 1 cut(s) 64
Vha464I CTTAAG 1 cut(s) 347
VpaK11BI GGWCC 2 cut(s) 111, 506
XapI RAATTY 1 cut(s) 120
XhoI CTCGAG 1 cut(s) 25
XmiI GTMKAC 1 cut(s) 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.