RLG00000008117

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000811
Physical Location & Seq
Forward (+)
25861872 .. 25863307
1436 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008117

Sequence Viewer

Length: 357 bp
ATGAAGGAACTCGAGAATTCCAGATTTCTGTATCCGGACAAACAGCTCCAGCATTGCAGATTCTGTATCCGGACAAACAATAAACAATACTATTACTATAGAGGGATTGAATTTGGCATCCTCTTCAGTAGTATTCCAATTCGAGAAGCCTCCACTTTCAGCCAACATCAACCATTTTCATCAAAATTGACATCAGGCTTGCTCCGACACTTGGATTTGGGACCGAAGCAACTAGATCTTGCGTTCTTGGAATCGGAAGAGGAGGAGAGAAGACTTTTGATTGAAGAGGGTACCTTTTCAGTGCTTGACAAAACACAAAAAAAAAGAACTTCCTTTCTTTGGTTGTCAATAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

14.08

Weight (kDa)

8.95

Isoelectric Point (pI)

64.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 290
AccB1I GGYRCC 1 cut(s) 290
AccIII TCCGGA 2 cut(s) 34, 69
AcsI RAATTY 2 cut(s) 16, 110
AcuI CTGAAG 1 cut(s) 109
AfaI GTAC 1 cut(s) 292
AfiI CCNNNNNNNGG 2 cut(s) 211, 339
AgsI TTSAA 2 cut(s) 110, 284
AluBI AGCT 1 cut(s) 46
AluI AGCT 1 cut(s) 46
AlwNI CAGNNNCTG 1 cut(s) 63
Ama87I CYCGRG 1 cut(s) 11
Aor13HI TCCGGA 2 cut(s) 34, 69
ApoI RAATTY 2 cut(s) 16, 110
Asp718I GGTACC 1 cut(s) 290
AspS9I GGNCC 1 cut(s) 221
AvaI CYCGRG 1 cut(s) 11
AvaII GGWCC 1 cut(s) 221
BanI GGYRCC 1 cut(s) 290
BbsI GAAGAC 1 cut(s) 277
BciVI GTATCC 2 cut(s) 42, 77
BfaI CTAG 1 cut(s) 233
BfmI CTRYAG 1 cut(s) 97
BfuI GTATCC 2 cut(s) 42, 77
BglII AGATCT 1 cut(s) 235
Bme18I GGWCC 1 cut(s) 221
BmeT110I CYCGRG 1 cut(s) 11
BmgT120I GGNCC 1 cut(s) 221
BmiI GGNNCC 2 cut(s) 222, 292
BmsI GCATC 1 cut(s) 126
BpiI GAAGAC 1 cut(s) 277
BpmI CTGGAG 1 cut(s) 32
BsaWI WCCGGW 2 cut(s) 34, 69
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 339
Bse3DI GCAATG 1 cut(s) 52
BseAI TCCGGA 2 cut(s) 34, 69
BseGI GGATG 1 cut(s) 117
BseLI CCNNNNNNNGG 2 cut(s) 211, 339
BseMI GCAATG 1 cut(s) 52
BseRI GAGGAG 2 cut(s) 275, 278
BshNI GGYRCC 1 cut(s) 290
BsiHKCI CYCGRG 1 cut(s) 11
BsiSI CCGG 2 cut(s) 35, 70
BslFI GGGAC 1 cut(s) 234
BslI CCNNNNNNNGG 2 cut(s) 211, 339
BsmFI GGGAC 1 cut(s) 234
BsoBI CYCGRG 1 cut(s) 11
Bsp13I TCCGGA 2 cut(s) 34, 69
Bsp143I GATC 1 cut(s) 235
BspEI TCCGGA 2 cut(s) 34, 69
BspLI GGNNCC 2 cut(s) 222, 292
BspT107I GGYRCC 1 cut(s) 290
BsrDI GCAATG 1 cut(s) 52
BssMI GATC 1 cut(s) 235
Bst6I CTCTTC 3 cut(s) 128, 252, 279
BstC8I GCNNGC 1 cut(s) 200
BstF5I GGATG 1 cut(s) 117
BstKTI GATC 1 cut(s) 238
BstMBI GATC 1 cut(s) 235
BstSFI CTRYAG 1 cut(s) 97
BstV2I GAAGAC 1 cut(s) 277
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
BsuI GTATCC 2 cut(s) 42, 77
BtsCI GGATG 1 cut(s) 117
BtsIMutI CAGTG 1 cut(s) 306
Cac8I GCNNGC 1 cut(s) 200
CaiI CAGNNNCTG 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 221
Csp6I GTAC 1 cut(s) 291
CviJI RGCY 4 cut(s) 46, 149, 162, 198
CviKI_1 RGCY 4 cut(s) 46, 149, 162, 198
CviQI GTAC 1 cut(s) 291
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
Eam1104I CTCTTC 3 cut(s) 128, 252, 279
EarI CTCTTC 3 cut(s) 128, 252, 279
Eco47I GGWCC 1 cut(s) 221
Eco57I CTGAAG 1 cut(s) 109
Eco88I CYCGRG 1 cut(s) 11
EcoRI GAATTC 1 cut(s) 16
FaiI YATR 1 cut(s) 99
FaqI GGGAC 1 cut(s) 234
FokI GGATG 1 cut(s) 104
FspBI CTAG 1 cut(s) 233
GsuI CTGGAG 1 cut(s) 32
HapII CCGG 2 cut(s) 35, 70
HinfI GANTC 2 cut(s) 60, 251
HpaII CCGG 2 cut(s) 35, 70
Hpy188I TCNGA 2 cut(s) 206, 256
Hpy188III TCNNGA 5 cut(s) 13, 21, 35, 70, 143
HpyCH4V TGCA 1 cut(s) 57
Kpn2I TCCGGA 2 cut(s) 34, 69
KpnI GGTACC 1 cut(s) 294
Kzo9I GATC 1 cut(s) 235
LmnI GCTCC 2 cut(s) 51, 207
LpnPI CCDG 5 cut(s) 34, 48, 62, 83, 180
LweI GCATC 1 cut(s) 126
MaeI CTAG 1 cut(s) 233
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MboII GAAGA 4 cut(s) 115, 269, 282, 296
MflI RGATCY 1 cut(s) 235
MluCI AATT 4 cut(s) 16, 110, 138, 185
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 6 cut(s) 95, 131, 160, 253, 256, 280
MroI TCCGGA 2 cut(s) 34, 69
MspI CCGG 2 cut(s) 35, 70
NdeII GATC 1 cut(s) 235
NlaIV GGNNCC 2 cut(s) 222, 292
PaeR7I CTCGAG 1 cut(s) 11
PfeI GAWTC 2 cut(s) 60, 251
PspN4I GGNNCC 2 cut(s) 222, 292
PspPI GGNCC 1 cut(s) 221
PstNI CAGNNNCTG 1 cut(s) 63
PsuI RGATCY 1 cut(s) 235
RsaI GTAC 1 cut(s) 292
RsaNI GTAC 1 cut(s) 291
Sau3AI GATC 1 cut(s) 235
Sau96I GGNCC 1 cut(s) 221
SetI ASST 3 cut(s) 48, 296, 356
SfaNI GCATC 1 cut(s) 126
SfcI CTRYAG 1 cut(s) 97
Sfr274I CTCGAG 1 cut(s) 11
SinI GGWCC 1 cut(s) 221
SlaI CTCGAG 1 cut(s) 11
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 4 cut(s) 16, 110, 138, 185
SspMI CTAG 1 cut(s) 233
TaqI TCGA 2 cut(s) 12, 142
TaqII GACCGA 1 cut(s) 238
TasI AATT 4 cut(s) 16, 110, 138, 185
TfiI GAWTC 2 cut(s) 60, 251
TscAI CASTG 1 cut(s) 306
TspDTI ATGAA 2 cut(s) 17, 168
TspRI CASTG 1 cut(s) 306
VpaK11BI GGWCC 1 cut(s) 221
XapI RAATTY 2 cut(s) 16, 110
XhoI CTCGAG 1 cut(s) 11
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.