Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000811

Physical Location & Seq

Genomic Coordinates Reverse (-)

31081348 .. 31085004

Gene Structure 3657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00190790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGAGACGATCGAGAAGGAGGAGGCGACCTGGCTGGTGAAGTTTCACGGCGGAGGTGGCCGGAGGCCGGAAGTTACGGCCGGGTCGGATCGGCCGGGTCCGGATGGTTATATGCAGATTCTTATGGATGAGTGGAATATAAAACCTCCTAGTTGGGTGAGTGCCGATCCTTGTGACGGCCGGGAAGTGCTCCTGGAAGTTGCTTGCTTCATATTTTATGAGGATATTACCGGAAAAATCTTAAAAACAGAATGCTGCTTTGGCATGTTTGGCAAGGGGATTTACTTTGCTGACCTTGTCGATAAGAGTGCTCGGTATTGCTATACAGATAAGAAAAATCCTGTGGGCCTCATGCTTTTAAGTATTGTGGATCCGAAAATGTTACTGGAACTCTTCTCGATGTACCGTGAGTGGCAGGAGGAGAATGTCAAAAAGCTGAGCCAAAAACAGGATTGTCGAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0003950 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006464 GO:0006471 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016070 GO:0016740 GO:0016757 GO:0016763 GO:0016874 GO:0016886 GO:0019538 GO:0022616 GO:0033554 GO:0033993 GO:0034641 GO:0034645 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0071704 GO:0090304 GO:0097305 GO:0140097 GO:1901360 GO:1901564 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 map03410 map04210 map04212 map04214 map04217

Pfam Domains

Protein Families

BRCT PADR1 PARP PARP_reg WGR zf-PARP

Protein Analysis

154

Amino Acids

17.66

Weight (kDa)

5.01

Isoelectric Point (pI)

39.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PARP	PF00644	83 - 149	3e-12	Poly(ADP-ribose) polymerase catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66290 AT5G66290
fragaria_vesca	FvH4_1g12000 FvH4_2g21980
malus_domestica	MD02G1134200.v1.1 MD15G1247200.v1.1
prunus_persica	Prupe.7G166600_v2.0.a1 Prupe.7G166600_v2.0.a1
pyrus_communis	pycom02g10580
rosa_chinensis	RchiOBHm_Chr0c39g0503221 RchiOBHm_Chr1g0353231 RchiOBHm_Chr2g0099641 RchiOBHm_Chr2g0126361 RchiOBHm_Chr5g0080231
rosa_laevigata	RLG00000008117 RLG00000016900 RLG00000021865
rosa_multiflora	Rmu_sc0000394.1_g000010 Rmu_sc0000543.1_g000026 Rmu_sc0005120.1_g000016 Rmu_sc0006325.1_g000056 Rmu_sc0010438.1_g000001 Rmu_sc0035741.1_g000001 Rmu_ssc0000366.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142880 Rroxscaffold_3G00248750 Rroxscaffold_5G00378640 Rroxscaffold_5G00382790 Rroxscaffold_7G00190790
rosa_rugosa	Rorug02G0081700 Rorug02G0258300 Rorug06G0170500
rosa_samantha	Rh1CG034700 Rh1DG035400 Rh2AG131100 Rh2AG189600 Rh2AG189700 Rh2BG134500 Rh2BG230100 Rh2BG328200 Rh2CG135300 Rh2DG135900 Rh2DG196000 Rh2DG196100 Rh2DG196200 Rh3DG312100 Rh4CG305000 Rh4DG111800 Rh5AG369300 Rh5AG496200 Rh5AG496300 Rh5BG555300 Rh5CG578200 Rh5DG254100 Rh5DG254200 Rh6BG167500 Rh6BG167600 Rh6BG241100 Rh7AG282200 Rh7CG301400 Rh7CG301500 Rh7DG435700 Rh7DG435800
rosa_wichuraiana	Rw0G008970 Rw2G010150 Rw3G024850 Rw4G013560 Rw5G022800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	100
AciI	CCGC	1 cut(s)	51
AclWI	GGATC	4 cut(s)	96, 161, 365, 378
AcoI	YGGCCR	4 cut(s)	58, 78, 92, 178
AfaI	GTAC	1 cut(s)	404
AfiI	CCNNNNNNNGG	3 cut(s)	67, 176, 448
AjnI	CCWGG	2 cut(s)	29, 192
AjuI	GAANNNNNNNTTGG	2 cut(s)	243, 275
AluBI	AGCT	1 cut(s)	436
AluI	AGCT	1 cut(s)	436
Alw21I	GWGCWC	2 cut(s)	192, 313
AlwI	GGATC	4 cut(s)	96, 161, 365, 378
Aor13HI	TCCGGA	1 cut(s)	100
AoxI	GGCC	6 cut(s)	58, 65, 78, 92, 178, 346
ApeKI	GCWGC	1 cut(s)	255
AspS9I	GGNCC	2 cut(s)	98, 346
AsuC2I	CCSGG	3 cut(s)	82, 96, 182
AsuHPI	GGTGA	2 cut(s)	49, 169
AvaII	GGWCC	1 cut(s)	98
BamHI	GGATCC	1 cut(s)	370
Bbv12I	GWGCWC	2 cut(s)	192, 313
BbvI	GCAGC	1 cut(s)	242
BccI	CCATC	1 cut(s)	98
BceAI	ACGGC	3 cut(s)	64, 93, 193
BcgI	CGANNNNNNTGC	2 cut(s)	290, 324
BciT130I	CCWGG	2 cut(s)	31, 194
BcnI	CCSGG	3 cut(s)	82, 96, 182
BfaI	CTAG	1 cut(s)	150
BisI	GCNGC	1 cut(s)	256
BlpI	GCTNAGC	1 cut(s)	437
BlsI	GCNGC	1 cut(s)	257
Bme1390I	CCNGG	5 cut(s)	31, 82, 96, 182, 194
Bme18I	GGWCC	1 cut(s)	98
BmgT120I	GGNCC	2 cut(s)	98, 346
BmiI	GGNNCC	2 cut(s)	99, 372
BmrFI	CCNGG	5 cut(s)	31, 82, 96, 182, 194
Bpu1102I	GCTNAGC	1 cut(s)	437
BpuMI	CCSGG	3 cut(s)	82, 96, 182
BsaWI	WCCGGW	2 cut(s)	100, 230
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 176, 448
Bse1I	ACTGG	1 cut(s)	390
BseAI	TCCGGA	1 cut(s)	100
BseBI	CCWGG	2 cut(s)	31, 194
BseGI	GGATG	2 cut(s)	109, 133
BseLI	CCNNNNNNNGG	3 cut(s)	67, 176, 448
BseMII	CTCAG	1 cut(s)	428
BseNI	ACTGG	1 cut(s)	390
BseRI	GAGGAG	2 cut(s)	35, 434
BseX3I	CGGCCG	3 cut(s)	78, 92, 178
BseXI	GCAGC	1 cut(s)	242
Bsh1285I	CGRYCG	4 cut(s)	12, 81, 95, 181
BshFI	GGCC	6 cut(s)	60, 67, 80, 94, 180, 348
BsiEI	CGRYCG	4 cut(s)	12, 81, 95, 181
BsiHKAI	GWGCWC	2 cut(s)	192, 313
BsiSI	CCGG	7 cut(s)	61, 68, 81, 95, 101, 181, 231
BslI	CCNNNNNNNGG	3 cut(s)	67, 176, 448
BsmI	GAATGC	1 cut(s)	257
BsnI	GGCC	6 cut(s)	60, 67, 80, 94, 180, 348
Bsp1286I	GDGCHC	2 cut(s)	192, 313
Bsp13I	TCCGGA	1 cut(s)	100
Bsp143I	GATC	4 cut(s)	9, 88, 166, 370
Bsp1720I	GCTNAGC	1 cut(s)	437
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	6 cut(s)	60, 67, 80, 94, 180, 348
BspCNI	CTCAG	1 cut(s)	429
BspEI	TCCGGA	1 cut(s)	100
BspLI	GGNNCC	2 cut(s)	99, 372
BspPI	GGATC	4 cut(s)	96, 161, 365, 378
BsrI	ACTGG	1 cut(s)	390
BssMI	GATC	4 cut(s)	9, 88, 166, 370
Bst2UI	CCWGG	2 cut(s)	31, 194
Bst4CI	ACNGT	1 cut(s)	407
Bst6I	CTCTTC	1 cut(s)	398
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	1 cut(s)	437
BstF5I	GGATG	2 cut(s)	109, 133
BstKTI	GATC	4 cut(s)	12, 91, 169, 373
BstMBI	GATC	4 cut(s)	9, 88, 166, 370
BstMCI	CGRYCG	4 cut(s)	12, 81, 95, 181
BstMWI	GCNNNNNNNGC	3 cut(s)	57, 261, 270
BstNI	CCWGG	2 cut(s)	31, 194
BstNSI	RCATGY	1 cut(s)	268
BstSCI	CCNGG	5 cut(s)	29, 80, 94, 180, 192
BstV1I	GCAGC	1 cut(s)	242
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BstZI	CGGCCG	3 cut(s)	78, 92, 178
BsuRI	GGCC	6 cut(s)	60, 67, 80, 94, 180, 348
BtsCI	GGATG	2 cut(s)	109, 133
Cac8I	GCNNGC	1 cut(s)	205
Cfr13I	GGNCC	2 cut(s)	98, 346
Csp6I	GTAC	1 cut(s)	403
CviAII	CATG	2 cut(s)	265, 352
CviJI	RGCY	9 cut(s)	34, 60, 67, 80, 94, 180, 348, 436, 441
CviKI_1	RGCY	9 cut(s)	34, 60, 67, 80, 94, 180, 348, 436, 441
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	1 cut(s)	437
DpnI	GATC	4 cut(s)	11, 90, 168, 372
DpnII	GATC	4 cut(s)	9, 88, 166, 370
EaeI	YGGCCR	4 cut(s)	58, 78, 92, 178
EagI	CGGCCG	3 cut(s)	78, 92, 178
Eam1104I	CTCTTC	1 cut(s)	398
EarI	CTCTTC	1 cut(s)	398
EciI	GGCGGA	1 cut(s)	66
EclXI	CGGCCG	3 cut(s)	78, 92, 178
Eco47I	GGWCC	1 cut(s)	98
Eco52I	CGGCCG	3 cut(s)	78, 92, 178
EcoRII	CCWGG	2 cut(s)	29, 192
FaeI	CATG	2 cut(s)	268, 355
FaiI	YATR	9 cut(s)	111, 113, 125, 140, 212, 219, 266, 324, 353
FatI	CATG	2 cut(s)	264, 351
Fnu4HI	GCNGC	1 cut(s)	256
FokI	GGATG	2 cut(s)	116, 140
Fsp4HI	GCNGC	1 cut(s)	256
FspBI	CTAG	1 cut(s)	150
GluI	GCNGC	1 cut(s)	256
HaeIII	GGCC	6 cut(s)	60, 67, 80, 94, 180, 348
HapII	CCGG	7 cut(s)	61, 68, 81, 95, 101, 181, 231
Hin1II	CATG	2 cut(s)	268, 355
HinfI	GANTC	1 cut(s)	118
HpaII	CCGG	7 cut(s)	61, 68, 81, 95, 101, 181, 231
HphI	GGTGA	2 cut(s)	49, 169
Hpy188I	TCNGA	2 cut(s)	88, 375
Hpy188III	TCNNGA	3 cut(s)	13, 101, 397
HpyAV	CCTTC	1 cut(s)	10
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4V	TGCA	1 cut(s)	115
HpyF10VI	GCNNNNNNNGC	3 cut(s)	57, 261, 270
HpyF3I	CTNAG	1 cut(s)	437
Hsp92II	CATG	2 cut(s)	268, 355
Kpn2I	TCCGGA	1 cut(s)	100
Kzo9I	GATC	4 cut(s)	9, 88, 166, 370
LmnI	GCTCC	1 cut(s)	195
Lsp1109I	GCAGC	1 cut(s)	242
MaeI	CTAG	1 cut(s)	150
MaeIII	GTNAC	3 cut(s)	73, 173, 381
MalI	GATC	4 cut(s)	11, 90, 168, 372
MboI	GATC	4 cut(s)	9, 88, 166, 370
MboII	GAAGA	1 cut(s)	385
MflI	RGATCY	1 cut(s)	370
MhlI	GDGCHC	2 cut(s)	192, 313
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	8 cut(s)	13, 16, 47, 57, 156, 214, 359, 412
MroI	TCCGGA	1 cut(s)	100
MseI	TTAA	2 cut(s)	242, 359
MspI	CCGG	7 cut(s)	61, 68, 81, 95, 101, 181, 231
MspR9I	CCNGG	5 cut(s)	31, 82, 96, 182, 194
Mva1269I	GAATGC	1 cut(s)	257
MvaI	CCWGG	2 cut(s)	31, 194
MwoI	GCNNNNNNNGC	3 cut(s)	57, 261, 270
NciI	CCSGG	3 cut(s)	82, 96, 182
NdeII	GATC	4 cut(s)	9, 88, 166, 370
NlaIII	CATG	2 cut(s)	268, 355
NlaIV	GGNNCC	2 cut(s)	99, 372
NmuCI	GTSAC	1 cut(s)	173
NspI	RCATGY	1 cut(s)	268
PctI	GAATGC	1 cut(s)	257
PfeI	GAWTC	1 cut(s)	118
PflFI	GACNNNGTC	1 cut(s)	296
PfoI	TCCNGGA	1 cut(s)	192
PkrI	GCNGC	1 cut(s)	257
Ple19I	CGATCG	1 cut(s)	12
Psp6I	CCWGG	2 cut(s)	29, 192
PspGI	CCWGG	2 cut(s)	29, 192
PspN4I	GGNNCC	2 cut(s)	99, 372
PspPI	GGNCC	2 cut(s)	98, 346
PsuI	RGATCY	1 cut(s)	370
PsyI	GACNNNGTC	1 cut(s)	296
PvuI	CGATCG	1 cut(s)	12
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
SaqAI	TTAA	2 cut(s)	242, 359
SatI	GCNGC	1 cut(s)	256
Sau3AI	GATC	4 cut(s)	9, 88, 166, 370
Sau96I	GGNCC	2 cut(s)	98, 346
ScrFI	CCNGG	5 cut(s)	31, 82, 96, 182, 194
SduI	GDGCHC	2 cut(s)	192, 313
SetI	ASST	5 cut(s)	32, 58, 148, 297, 438
SinI	GGWCC	1 cut(s)	98
SsiI	CCGC	1 cut(s)	51
SspMI	CTAG	1 cut(s)	150
StyD4I	CCNGG	5 cut(s)	29, 80, 94, 180, 192
TaaI	ACNGT	1 cut(s)	407
TaqI	TCGA	4 cut(s)	12, 300, 398, 457
TfiI	GAWTC	1 cut(s)	118
Tru1I	TTAA	2 cut(s)	242, 359
Tru9I	TTAA	2 cut(s)	242, 359
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	1 cut(s)	255
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	1 cut(s)	199
Tth111I	GACNNNGTC	1 cut(s)	296
VpaK11BI	GGWCC	1 cut(s)	98
XceI	RCATGY	1 cut(s)	268
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.