FvH4_1g12010

GDP-mannose 4,6 dehydratase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
6560468 .. 6562666
2199 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g12010.t1

Sequence Viewer

Length: 1104 bp
ATGGCGACCCAGAACGAGACCACCGTCAGATCCGGATCCGGATCCAACGGCGACGAGCGTCGCAAGGTGGCGCTGATAACCGGTATCACCGGCCAGGACGGGTCCTACCTGACGGAGTTTCTCCTCAACAAAGGCTACGACGTCCACGGCCTGATCCGCCGCTCCTCCAACTTCAACACCCAGCGGATCAACCACATCTACATCGACCCCCACAACGCCCACAAGGCCCGCATGAAGCTCCACTACGCCGACCTCACCGACGCCTCCTCCCTCCGCCGCTGGCTCGACACCATCGCCCCCGACGAGGTCTACAACCTCGCCGCCCAGTCCCACGTCGCCGTCTCCTTCGAGATCCCTGACTACACCGCCGACGTCGTCGCCACCGGCGCCCTCCGCCTCCTCGAGGCCGTCCGCAACCACGTCGACGCCACCGGGAGGAAAAACGTCAAGTACTACCAGGCCGGCTCCTCCGAGATGTTCGGCGCCACCCCGCCTCCGCAGTCCGAGACGACGCCGTTTCATCCAAGATCCCCTTACGCCGCCTCGAAATGCGCGGCGCATTGGTACACCGTGAACTACCGCGAGGCCTACGGGCTCTACGCCTGTAACGGCATTCTGTTTAATCACGAATCCCCGAGGAGGGGTGAGAATTTCGTGACAAGGAAGATCACTCGGGCCGTGGGCCGGATCAAAATCGGGCTGCAGAGCAAGCTGTTCTTGGGGAATTTGAATGCTTCGAGGGATTGGGGGTTTGCGGGTGACTATGTGGAGGCAATGTGGATGATGCTGCAGCAGGAGAAGCCTGATGACTATGTTGTGGCCACCGAGGAGTCGCATACGGTGGAGGAGTTTTTGGAGGTGGCATTTGGGTATGTGGGGATGAACTGGAAGGATCATGTTTTGCTTGACAAGAGGTACTTGAGGCCGTCGGAGGTGGATAATCTGAAAGGAGATGCAAGCAAGGCGAAGAAGATTCTTGGGTGGAAGCCGAAGGTTGGGTTTCAGGAGCTGGTGAAGATGATGGTGGATGAAGATGTCGAGTTGGCCAAGAGGGAGAAGGTTCTTGTTGATGCTGGATACATGGATGCCCAGCAACAACCATGA

Protein Analysis

368

Amino Acids

41.39

Weight (kDa)

6.88

Isoelectric Point (pI)

44.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 24 - 274 2.2e-73 NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd PF16363 25 - 341 5.2e-140 GDP-mannose 4,6 dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013261)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 144, 375
AbsI CCTCGAGG 1 cut(s) 401
AccB1I GGYRCC 2 cut(s) 386, 482
AccBSI CCGCTC 1 cut(s) 162
AccI GTMKAC 2 cut(s) 309, 423
AccII CGCG 2 cut(s) 554, 582
AccIII TCCGGA 2 cut(s) 32, 38
AcoI YGGCCR 3 cut(s) 91, 819, 1044
AcsI RAATTY 2 cut(s) 649, 724
AcyI GRCGYC 7 cut(s) 141, 261, 372, 387, 426, 483, 512
AfaI GTAC 3 cut(s) 452, 566, 917
AfiI CCNNNNNNNGG 8 cut(s) 304, 403, 435, 639, 640, 641, 684, 995
AgeI ACCGGT 1 cut(s) 80
AgsI TTSAA 2 cut(s) 175, 730
AjiI CACGTC 2 cut(s) 334, 421
AjnI CCWGG 2 cut(s) 93, 456
AluBI AGCT 3 cut(s) 238, 712, 1009
AluI AGCT 3 cut(s) 238, 712, 1009
Alw26I GTCTC 3 cut(s) 11, 346, 500
AlwNI CAGNNNCTG 1 cut(s) 1009
Ama87I CYCGRG 3 cut(s) 401, 634, 672
Aor13HI TCCGGA 2 cut(s) 32, 38
ApeKI GCWGC 3 cut(s) 700, 787, 790
ApoI RAATTY 2 cut(s) 649, 724
AsiGI ACCGGT 1 cut(s) 80
AspLEI GCGC 5 cut(s) 73, 389, 485, 554, 559
AspS9I GGNCC 4 cut(s) 102, 226, 675, 682
AsuC2I CCSGG 1 cut(s) 433
AsuHPI GGTGA 5 cut(s) 79, 247, 656, 770, 1024
AvaI CYCGRG 3 cut(s) 401, 634, 672
AvaII GGWCC 1 cut(s) 102
BalI TGGCCA 2 cut(s) 821, 1046
BamHI GGATCC 2 cut(s) 35, 41
BanI GGYRCC 2 cut(s) 386, 482
BanII GRGCYC 1 cut(s) 597
BarI GAAGNNNNNNTAC 2 cut(s) 227, 259
BbvI GCAGC 3 cut(s) 687, 774, 802
BccI CCATC 2 cut(s) 299, 1015
BceAI ACGGC 8 cut(s) 64, 163, 323, 392, 499, 625, 662, 910
BcgI CGANNNNNNTGC 2 cut(s) 403, 437
BciT130I CCWGG 2 cut(s) 95, 458
BciVI GTATCC 1 cut(s) 1070
BcnI CCSGG 1 cut(s) 433
BcoDI GTCTC 3 cut(s) 11, 346, 500
BfmI CTRYAG 2 cut(s) 701, 788
BfoI RGCGCY 3 cut(s) 74, 390, 486
BfuI GTATCC 1 cut(s) 1070
BglI GCCNNNNNGGC 1 cut(s) 224
BisI GCNGC 8 cut(s) 160, 277, 321, 540, 555, 701, 788, 791
BlsI GCNGC 8 cut(s) 161, 278, 322, 541, 556, 702, 789, 792
BmcAI AGTACT 1 cut(s) 452
Bme1390I CCNGG 3 cut(s) 95, 433, 458
Bme18I GGWCC 1 cut(s) 102
BmeT110I CYCGRG 3 cut(s) 401, 634, 672
BmgBI CACGTC 2 cut(s) 334, 421
BmgT120I GGNCC 4 cut(s) 102, 226, 675, 682
BmiI GGNNCC 6 cut(s) 37, 43, 103, 388, 466, 484
BmrFI CCNGG 3 cut(s) 95, 433, 458
BmrI ACTGGG 1 cut(s) 319
BmsI GCATC 4 cut(s) 774, 943, 1060, 1075
BmuI ACTGGG 1 cut(s) 319
BoxI GACNNNNGTC 2 cut(s) 23, 57
BpuEI CTTGAG 1 cut(s) 940
BpuMI CCSGG 1 cut(s) 433
BsaBI GATNNNNATC 3 cut(s) 34, 40, 692
BsaHI GRCGYC 7 cut(s) 141, 261, 372, 387, 426, 483, 512
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 4 cut(s) 145, 635, 678, 825
BsaWI WCCGGW 3 cut(s) 32, 38, 80
BsaXI ACNNNNNCTCC 6 cut(s) 251, 281, 478, 508, 761, 791
Bsc4I CCNNNNNNNGG 8 cut(s) 304, 403, 435, 639, 640, 641, 684, 995
Bse118I RCCGGY 4 cut(s) 80, 89, 383, 461
Bse1I ACTGG 2 cut(s) 325, 890
Bse3DI GCAATG 1 cut(s) 780
Bse8I GATNNNNATC 3 cut(s) 34, 40, 692
BseAI TCCGGA 2 cut(s) 32, 38
BseBI CCWGG 2 cut(s) 95, 458
BseDI CCNNGG 4 cut(s) 145, 635, 678, 825
BseGI GGATG 5 cut(s) 520, 786, 885, 1033, 1090
BseJI GATNNNNATC 3 cut(s) 34, 40, 692
BseLI CCNNNNNNNGG 8 cut(s) 304, 403, 435, 639, 640, 641, 684, 995
BseMI GCAATG 1 cut(s) 780
BseNI ACTGG 2 cut(s) 325, 890
BseRI GAGGAG 8 cut(s) 113, 154, 256, 389, 457, 652, 842, 860
BseXI GCAGC 3 cut(s) 687, 774, 802
BseYI CCCAGC 2 cut(s) 180, 1089
Bsh1236I CGCG 2 cut(s) 554, 582
BshNI GGYRCC 2 cut(s) 386, 482
BshTI ACCGGT 1 cut(s) 80
BsiHKCI CYCGRG 3 cut(s) 401, 634, 672
BsiSI CCGG 8 cut(s) 33, 39, 81, 90, 384, 432, 462, 685
BslFI GGGAC 1 cut(s) 313
BslI CCNNNNNNNGG 8 cut(s) 304, 403, 435, 639, 640, 641, 684, 995
BsmAI GTCTC 3 cut(s) 11, 346, 500
BsmBI CGTCTC 2 cut(s) 346, 500
BsmFI GGGAC 1 cut(s) 313
BsmI GAATGC 2 cut(s) 612, 736
Bso31I GGTCTC 1 cut(s) 11
BsoBI CYCGRG 3 cut(s) 401, 634, 672
Bsp1286I GDGCHC 1 cut(s) 597
Bsp13I TCCGGA 2 cut(s) 32, 38
BspEI TCCGGA 2 cut(s) 32, 38
BspFNI CGCG 2 cut(s) 554, 582
BspLI GGNNCC 6 cut(s) 37, 43, 103, 388, 466, 484
BspMAI CTGCAG 2 cut(s) 705, 792
BspT107I GGYRCC 2 cut(s) 386, 482
BspTNI GGTCTC 1 cut(s) 11
BsrBI CCGCTC 1 cut(s) 162
BsrDI GCAATG 1 cut(s) 780
BsrFI RCCGGY 4 cut(s) 80, 89, 383, 461
BsrI ACTGG 2 cut(s) 325, 890
BssAI RCCGGY 4 cut(s) 80, 89, 383, 461
BssECI CCNNGG 4 cut(s) 145, 635, 678, 825
BssNI GRCGYC 7 cut(s) 141, 261, 372, 387, 426, 483, 512
Bst2UI CCWGG 2 cut(s) 95, 458
Bst4CI ACNGT 3 cut(s) 25, 571, 841
BstACI GRCGYC 7 cut(s) 141, 261, 372, 387, 426, 483, 512
BstC8I GCNNGC 5 cut(s) 229, 281, 463, 710, 958
BstDSI CCRYGG 2 cut(s) 145, 678
BstENI CCTNNNNNAGG 1 cut(s) 401
BstF5I GGATG 5 cut(s) 520, 786, 885, 1033, 1090
BstFNI CGCG 2 cut(s) 554, 582
BstH2I RGCGCY 3 cut(s) 74, 390, 486
BstHHI GCGC 5 cut(s) 73, 389, 485, 554, 559
BstMAI GTCTC 3 cut(s) 11, 346, 500
BstMWI GCNNNNNNNGC 7 cut(s) 156, 224, 386, 393, 709, 799, 962
BstNI CCWGG 2 cut(s) 95, 458
BstPAI GACNNNNGTC 2 cut(s) 23, 57
BstSCI CCNGG 3 cut(s) 93, 431, 456
BstSFI CTRYAG 2 cut(s) 701, 788
BstUI CGCG 2 cut(s) 554, 582
BstV1I GCAGC 3 cut(s) 687, 774, 802
BstX2I RGATCY 5 cut(s) 29, 35, 41, 351, 527
BstYI RGATCY 5 cut(s) 29, 35, 41, 351, 527
BsuI GTATCC 1 cut(s) 1070
BtgI CCRYGG 2 cut(s) 145, 678
BtgZI GCGATG 1 cut(s) 277
BtrI CACGTC 2 cut(s) 334, 421
BtsCI GGATG 5 cut(s) 520, 786, 885, 1033, 1090
Cac8I GCNNGC 5 cut(s) 229, 281, 463, 710, 958
CaiI CAGNNNCTG 1 cut(s) 1009
CfoI GCGC 5 cut(s) 73, 389, 485, 554, 559
Cfr10I RCCGGY 4 cut(s) 80, 89, 383, 461
Cfr13I GGNCC 4 cut(s) 102, 226, 675, 682
CseI GACGC 4 cut(s) 47, 269, 434, 520
Csp6I GTAC 3 cut(s) 451, 565, 916
CspAI ACCGGT 1 cut(s) 80
CviAII CATG 4 cut(s) 232, 896, 1081, 1101
CviQI GTAC 3 cut(s) 451, 565, 916
DinI GGCGCC 2 cut(s) 388, 484
EaeI YGGCCR 3 cut(s) 91, 819, 1044
EciI GGCGGA 3 cut(s) 146, 263, 383
Eco147I AGGCCT 1 cut(s) 587
Eco24I GRGCYC 1 cut(s) 597
Eco31I GGTCTC 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 102
Eco88I CYCGRG 3 cut(s) 401, 634, 672
EcoNI CCTNNNNNAGG 1 cut(s) 401
EcoO109I RGGNCCY 1 cut(s) 102
EcoRII CCWGG 2 cut(s) 93, 456
EcoT38I GRGCYC 1 cut(s) 597
EgeI GGCGCC 2 cut(s) 388, 484
EheI GGCGCC 2 cut(s) 388, 484
Esp3I CGTCTC 2 cut(s) 346, 500
FaeI CATG 4 cut(s) 235, 899, 1084, 1104
FaiI YATR 8 cut(s) 233, 765, 813, 837, 873, 897, 1082, 1102
FalI AAGNNNNNCTT 6 cut(s) 517, 549, 701, 733, 902, 934
FaqI GGGAC 1 cut(s) 313
FatI CATG 4 cut(s) 231, 895, 1080, 1100
FauI CCCGC 3 cut(s) 236, 498, 748
FblI GTMKAC 2 cut(s) 309, 423
Fnu4HI GCNGC 8 cut(s) 160, 277, 321, 540, 555, 701, 788, 791
FokI GGATG 5 cut(s) 507, 793, 892, 1040, 1097
FriOI GRGCYC 1 cut(s) 597
Fsp4HI GCNGC 8 cut(s) 160, 277, 321, 540, 555, 701, 788, 791
GlaI GCGC 5 cut(s) 72, 388, 484, 553, 558
GluI GCNGC 8 cut(s) 160, 277, 321, 540, 555, 701, 788, 791
GsaI CCCAGC 2 cut(s) 184, 1093
HaeII RGCGCY 3 cut(s) 74, 390, 486
HapII CCGG 8 cut(s) 33, 39, 81, 90, 384, 432, 462, 685
HgaI GACGC 4 cut(s) 47, 269, 434, 520
HhaI GCGC 5 cut(s) 73, 389, 485, 554, 559
Hin1I GRCGYC 7 cut(s) 141, 261, 372, 387, 426, 483, 512
Hin1II CATG 4 cut(s) 235, 899, 1084, 1104
Hin6I GCGC 5 cut(s) 71, 387, 483, 552, 557
HinP1I GCGC 5 cut(s) 71, 387, 483, 552, 557
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 3 cut(s) 629, 830, 973
HpaII CCGG 8 cut(s) 33, 39, 81, 90, 384, 432, 462, 685
HphI GGTGA 5 cut(s) 79, 247, 656, 770, 1024
Hpy166II GTNNAC 5 cut(s) 145, 310, 424, 567, 574
Hpy188I TCNGA 5 cut(s) 29, 472, 505, 931, 945
Hpy188III TCNNGA 6 cut(s) 33, 39, 349, 626, 655, 1004
Hpy8I GTNNAC 5 cut(s) 145, 310, 424, 567, 574
HpyAV CCTTC 4 cut(s) 355, 883, 985, 1051
HpyCH4III ACNGT 3 cut(s) 25, 571, 841
HpyCH4IV ACGT 5 cut(s) 141, 333, 372, 420, 444
HpyCH4V TGCA 3 cut(s) 703, 790, 956
HpyF10VI GCNNNNNNNGC 7 cut(s) 156, 224, 386, 393, 709, 799, 962
HpySE526I ACGT 5 cut(s) 141, 333, 372, 420, 444
Hsp92I GRCGYC 7 cut(s) 141, 261, 372, 387, 426, 483, 512
Hsp92II CATG 4 cut(s) 235, 899, 1084, 1104
HspAI GCGC 5 cut(s) 71, 387, 483, 552, 557
KasI GGCGCC 2 cut(s) 386, 482
Kpn2I TCCGGA 2 cut(s) 32, 38
KroI GCCGGC 1 cut(s) 461
KroNI GCCGGC 1 cut(s) 463
LmnI GCTCC 4 cut(s) 167, 243, 470, 1006
Lsp1109I GCAGC 3 cut(s) 687, 774, 802
LweI GCATC 4 cut(s) 774, 943, 1060, 1075
MaeII ACGT 5 cut(s) 141, 333, 372, 420, 444
MaeIII GTNAC 3 cut(s) 605, 655, 758
MbiI CCGCTC 1 cut(s) 162
MboII GAAGA 5 cut(s) 676, 979, 982, 1027, 1043
MflI RGATCY 5 cut(s) 29, 35, 41, 351, 527
MhlI GDGCHC 1 cut(s) 597
MlsI TGGCCA 2 cut(s) 821, 1046
MluCI AATT 2 cut(s) 649, 724
MluNI TGGCCA 2 cut(s) 821, 1046
Mly113I GGCGCC 2 cut(s) 387, 483
MlyI GAGTC 1 cut(s) 839
MmeI TCCRAC 3 cut(s) 69, 192, 909
Mox20I TGGCCA 2 cut(s) 821, 1046
MroI TCCGGA 2 cut(s) 32, 38
MroNI GCCGGC 1 cut(s) 461
MscI TGGCCA 2 cut(s) 821, 1046
MseI TTAA 1 cut(s) 621
Msp20I TGGCCA 2 cut(s) 821, 1046
MspA1I CMGCKG 2 cut(s) 184, 279
MspI CCGG 8 cut(s) 33, 39, 81, 90, 384, 432, 462, 685
MspR9I CCNGG 3 cut(s) 95, 433, 458
MteI GCGCNGCGC 1 cut(s) 555
Mva1269I GAATGC 2 cut(s) 612, 736
MvaI CCWGG 2 cut(s) 95, 458
MvnI CGCG 2 cut(s) 554, 582
MwoI GCNNNNNNNGC 7 cut(s) 156, 224, 386, 393, 709, 799, 962
NaeI GCCGGC 1 cut(s) 463
NarI GGCGCC 2 cut(s) 387, 483
NciI CCSGG 1 cut(s) 433
NgoMIV GCCGGC 1 cut(s) 461
NlaIII CATG 4 cut(s) 235, 899, 1084, 1104
NlaIV GGNNCC 6 cut(s) 37, 43, 103, 388, 466, 484
NmuCI GTSAC 2 cut(s) 655, 758
PaeR7I CTCGAG 1 cut(s) 401
PceI AGGCCT 1 cut(s) 587
PcsI WCGNNNNNNNCGW 2 cut(s) 21, 300
PctI GAATGC 2 cut(s) 612, 736
PdiI GCCGGC 1 cut(s) 463
PfeI GAWTC 2 cut(s) 629, 973
PflFI GACNNNGTC 2 cut(s) 305, 374
PinAI ACCGGT 1 cut(s) 80
PkrI GCNGC 8 cut(s) 161, 278, 322, 541, 556, 702, 789, 792
PleI GAGTC 1 cut(s) 838
PluTI GGCGCC 2 cut(s) 390, 486
PpsI GAGTC 1 cut(s) 838
PpuMI RGGWCCY 1 cut(s) 102
PshAI GACNNNNGTC 2 cut(s) 23, 57
Psp5II RGGWCCY 1 cut(s) 102
Psp6I CCWGG 2 cut(s) 93, 456
PspFI CCCAGC 2 cut(s) 180, 1089
PspGI CCWGG 2 cut(s) 93, 456
PspN4I GGNNCC 6 cut(s) 37, 43, 103, 388, 466, 484
PspPI GGNCC 4 cut(s) 102, 226, 675, 682
PspPPI RGGWCCY 1 cut(s) 102
PspXI VCTCGAGB 1 cut(s) 401
PstI CTGCAG 2 cut(s) 705, 792
PstNI CAGNNNCTG 1 cut(s) 1009
PsuI RGATCY 5 cut(s) 29, 35, 41, 351, 527
PsyI GACNNNGTC 2 cut(s) 305, 374
RsaI GTAC 3 cut(s) 452, 566, 917
RsaNI GTAC 3 cut(s) 451, 565, 916
SalI GTCGAC 1 cut(s) 422
SaqAI TTAA 1 cut(s) 621
SatI GCNGC 8 cut(s) 160, 277, 321, 540, 555, 701, 788, 791
Sau96I GGNCC 4 cut(s) 102, 226, 675, 682
ScaI AGTACT 1 cut(s) 452
SchI GAGTC 1 cut(s) 839
ScrFI CCNGG 3 cut(s) 95, 433, 458
SduI GDGCHC 1 cut(s) 597
SfaNI GCATC 4 cut(s) 774, 943, 1060, 1075
SfcI CTRYAG 2 cut(s) 701, 788
SfoI GGCGCC 2 cut(s) 388, 484
Sfr274I CTCGAG 1 cut(s) 401
SgrAI CRCCGGYG 1 cut(s) 383
SgrDI CGTCGACG 1 cut(s) 422
SinI GGWCC 1 cut(s) 102
SlaI CTCGAG 1 cut(s) 401
SmlI CTYRAG 2 cut(s) 401, 919
SmoI CTYRAG 2 cut(s) 401, 919
Sse9I AATT 2 cut(s) 649, 724
SseBI AGGCCT 1 cut(s) 587
SspDI GGCGCC 2 cut(s) 386, 482
StuI AGGCCT 1 cut(s) 587
StyD4I CCNGG 3 cut(s) 93, 431, 456
TaaI ACNGT 3 cut(s) 25, 571, 841
TaiI ACGT 5 cut(s) 144, 336, 375, 423, 447
TaqI TCGA 8 cut(s) 204, 285, 348, 402, 423, 545, 737, 1038
TasI AATT 2 cut(s) 649, 724
TatI WGTACW 1 cut(s) 450
TauI GCSGC 5 cut(s) 162, 279, 323, 542, 557
TfiI GAWTC 2 cut(s) 629, 973
Tru1I TTAA 1 cut(s) 621
Tru9I TTAA 1 cut(s) 621
TseFI GTSAC 2 cut(s) 655, 758
TseI GCWGC 3 cut(s) 700, 787, 790
Tsp45I GTSAC 2 cut(s) 655, 758
TspDTI ATGAA 4 cut(s) 248, 509, 896, 1044
TspGWI ACGGA 1 cut(s) 128
Tth111I GACNNNGTC 2 cut(s) 305, 374
VpaK11BI GGWCC 1 cut(s) 102
XagI CCTNNNNNAGG 1 cut(s) 401
XapI RAATTY 2 cut(s) 649, 724
XhoI CTCGAG 1 cut(s) 401
XmiI GTMKAC 2 cut(s) 309, 423
ZraI GACGTC 2 cut(s) 142, 373
ZrmI AGTACT 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.