AT3G51280

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011032
Physical Location & Seq
Forward (+)
19037140 .. 19039048
1909 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G51280.1

Sequence Viewer

Length: 1293 bp
ATGATGAGAGATGTTTTCAGGCCGACTAAATCAGCCCCTTGTTCTCCTGCAAAGCCACTTGGTATCTCTCGCACTCAATCTGAATCATTTCATGCTATTCACAAAGTTCCTGTCGGAGACAGTCCTTATGTCAGAGCAAAGAATGTTCAGTTAGTGGAGAAGGATCCAGAGAGAGCAATTCCTCTGTTTTGGAAGGCTATTAATGCTGGAGATAGAGTGGACAGTGCTTTGAAAGACATGGCTATTGTGATGAAGCAACAAAACCGCGCTGAAGAAGCCATTGAAGCTATTAAATCACTCAGAGTTAGATGTTCAGATCAAGCTCAGGAATCTCTCGACAATATCCTCTTAGATCTCTACAAGAGATGTGGGAGATTAGATGACCAGATTGGACTTTTGAAACATAAGCTCTTCTTGATACAGAAAGGACTCGCTTTCAATGGTAAACGAACCAAAACAGCTAGATCTCAAGGCAAGAAGTTTCAAGTCTCTGTGGAGCAAGAAGCTACTCGGTTACTGGGAAACTTGGGATGGGCTCTGATGCAACGAGACAACTTTGTGGAAGCTGAAGATGCATACAGAAGAGCTTTATCAATAGCACCAGACAACAACAAAATGTGTAACCTTGGTATCTGCCTTATGAAGCAAGGAAGGATCGATGAGGCCAAAGAGACTTTACGACGTGTGAAACCCGCGGTTGTTGATGGCCCTAGAGGCGTGGATTCACATCTAAAAGCTTACGAGAGAGCGCAACAGATGCTGAATGATCTTGGATCTGAGATGATGAGAAGAGGAGGAGATGATAAGGTTGAACAAAGAAGGCTCTTTGATGCAATCTTTGGATCTTCCTCTATATGGCAACCTCAGCCTTGTAGTGAGCAGACTGTGAAGGCTAAACCAAAGCCTGGTTTAAGCAATGGTGATGGATACGGTGATGAGAACGTGAAGATGAGTGTGAATCCAGTAGTAGTAAACCCATTAAGGGTTGATGCAAAACCGTTCTTCTCTTCGAAGTTGGTCATCAGTAACAACGAGAAGCTGAAGAGAACGAGATCGTCGAGCCAAGGGATGGGGATGTTGAGTGGTATTGGTGGTGATCATGAGGGAGAGACAAACACAAGCACGAGAAGGAGATTGTCAATGGAGAAGAAAGCAACGGAGTGTGGATTACCAGACAATAAAGACTTTGAAGATGCGATCATGGCTGCTGTTTTAGGAACAGAAACCAAAGTGGACAAGAAGAGGCTCAAGGTGTTCCAGGATATCACTTTGTGTCTCAATCAGAGTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

430

Amino Acids

47.98

Weight (kDa)

9.43

Isoelectric Point (pI)

46.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_1 PF00515 172 - 203 4.9e-07 Tetratricopeptide repeat
TPR_2 PF07719 172 - 203 1.9e-06 Tetratricopeptide repeat
TPR_19 PF14559 180 - 237 4e-08 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011032)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51280
fragaria_vesca FvH4_1g11500 FvH4_1g11500
malus_domestica MD02G1127900.v1.1 MD15G1243100.v1.1
prunus_persica Prupe.7G171000_v2.0.a1
pyrus_communis pycom02g10000 pycom15g21420
rosa_chinensis RchiOBHm_Chr2g0099121
rosa_laevigata RLG00000016850
rosa_multiflora Rmu_sc0009113.1_g000006 Rmu_sc0012098.1_g000002 Rmu_sc0034643.1_g000001
rosa_roxburghii Rroxscaffold_2G00143420
rosa_rugosa Rorug02G0076900
rosa_samantha Rh2AG126000 Rh2BG129300 Rh2CG130300 Rh2DG130700
rosa_wichuraiana Rw2G009710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 905, 1069
AccII CGCG 2 cut(s) 267, 695
AciI CCGC 3 cut(s) 265, 693, 695
AclWI GGATC 5 cut(s) 158, 171, 662, 781, 850
AcuI CTGAAG 3 cut(s) 291, 588, 1061
AdeI CACNNNGTG 1 cut(s) 1272
AfiI CCNNNNNNNGG 4 cut(s) 855, 905, 982, 1069
AflIII ACRYGT 1 cut(s) 682
AgsI TTSAA 7 cut(s) 232, 284, 400, 439, 485, 812, 1190
AjiI CACGTC 1 cut(s) 683
AjnI CCWGG 2 cut(s) 904, 1257
AluBI AGCT 9 cut(s) 287, 323, 409, 461, 506, 566, 587, 737, 1039
AluI AGCT 9 cut(s) 287, 323, 409, 461, 506, 566, 587, 737, 1039
Alw26I GTCTC 6 cut(s) 111, 493, 543, 665, 1103, 1280
AlwI GGATC 5 cut(s) 158, 171, 662, 781, 850
AlwNI CAGNNNCTG 1 cut(s) 760
AoxI GGCC 3 cut(s) 20, 663, 706
ApeKI GCWGC 1 cut(s) 1205
ArsI GACNNNNNNTTYG 2 cut(s) 96, 128
AseI ATTAAT 1 cut(s) 201
Asp700I GAANNNNTTC 1 cut(s) 87
AspLEI GCGC 2 cut(s) 269, 751
AspS9I GGNCC 1 cut(s) 707
AsuHPI GGTGA 3 cut(s) 932, 944, 1106
AsuII TTCGAA 1 cut(s) 1010
BaeI ACNNNNGTAYC 2 cut(s) 613, 646
BamHI GGATCC 1 cut(s) 163
BanII GRGCYC 1 cut(s) 538
BauI CACGAG 1 cut(s) 1123
BbvCI CCTCAGC 1 cut(s) 864
BbvI GCAGC 1 cut(s) 1192
BccI CCATC 4 cut(s) 525, 698, 917, 1063
BciT130I CCWGG 2 cut(s) 906, 1259
BciVI GTATCC 1 cut(s) 920
BclI TGATCA 1 cut(s) 1096
BcoDI GTCTC 6 cut(s) 111, 493, 543, 665, 1103, 1280
BfaI CTAG 2 cut(s) 462, 711
BfuI GTATCC 1 cut(s) 920
BglI GCCNNNNNGGC 1 cut(s) 714
BglII AGATCT 2 cut(s) 352, 464
BisI GCNGC 1 cut(s) 1206
BlsI GCNGC 1 cut(s) 1207
Bme1390I CCNGG 2 cut(s) 906, 1259
BmgBI CACGTC 1 cut(s) 683
BmgT120I GGNCC 1 cut(s) 707
BmiI GGNNCC 1 cut(s) 165
BmrFI CCNGG 2 cut(s) 906, 1259
BmrI ACTGGG 1 cut(s) 527
BmsI GCATC 6 cut(s) 531, 562, 747, 820, 979, 1183
BmuI ACTGGG 1 cut(s) 527
BpmI CTGGAG 1 cut(s) 228
Bpu10I CCTNAGC 2 cut(s) 324, 864
Bpu14I TTCGAA 1 cut(s) 1010
BpuEI CTTGAG 2 cut(s) 453, 1232
Bsa29I ATCGAT 1 cut(s) 657
BsaBI GATNNNNATC 1 cut(s) 726
BsaJI CCNNGG 3 cut(s) 625, 693, 1063
BsaXI ACNNNNNCTCC 2 cut(s) 201, 231
Bsc4I CCNNNNNNNGG 4 cut(s) 855, 905, 982, 1069
Bse1I ACTGG 2 cut(s) 522, 962
Bse3DI GCAATG 1 cut(s) 922
Bse8I GATNNNNATC 1 cut(s) 726
BseBI CCWGG 2 cut(s) 906, 1259
BseCI ATCGAT 1 cut(s) 657
BseDI CCNNGG 3 cut(s) 625, 693, 1063
BseGI GGATG 3 cut(s) 536, 1074, 1080
BseJI GATNNNNATC 1 cut(s) 726
BseLI CCNNNNNNNGG 4 cut(s) 855, 905, 982, 1069
BseMI GCAATG 1 cut(s) 922
BseMII CTCAG 4 cut(s) 313, 338, 768, 878
BseNI ACTGG 2 cut(s) 522, 962
BseRI GAGGAG 2 cut(s) 807, 810
BseXI GCAGC 1 cut(s) 1192
Bsh1236I CGCG 2 cut(s) 267, 695
BshFI GGCC 3 cut(s) 22, 665, 708
BshVI ATCGAT 1 cut(s) 657
BslI CCNNNNNNNGG 4 cut(s) 855, 905, 982, 1069
BsmAI GTCTC 6 cut(s) 111, 493, 543, 665, 1103, 1280
BsnI GGCC 3 cut(s) 22, 665, 708
Bsp119I TTCGAA 1 cut(s) 1010
Bsp1286I GDGCHC 1 cut(s) 538
BspACI CCGC 3 cut(s) 265, 693, 695
BspANI GGCC 3 cut(s) 22, 665, 708
BspCNI CTCAG 4 cut(s) 312, 337, 769, 877
BspDI ATCGAT 1 cut(s) 657
BspFNI CGCG 2 cut(s) 267, 695
BspHI TCATGA 1 cut(s) 1099
BspLI GGNNCC 1 cut(s) 165
BspPI GGATC 5 cut(s) 158, 171, 662, 781, 850
BspQI GCTCTTC 2 cut(s) 416, 577
BspT104I TTCGAA 1 cut(s) 1010
BsrDI GCAATG 1 cut(s) 922
BsrI ACTGG 2 cut(s) 522, 962
BssECI CCNNGG 3 cut(s) 625, 693, 1063
BssSI CACGAG 1 cut(s) 1123
BssT1I CCWWGG 2 cut(s) 625, 1063
Bst2BI CACGAG 1 cut(s) 1123
Bst2UI CCWGG 2 cut(s) 906, 1259
Bst4CI ACNGT 5 cut(s) 122, 224, 886, 932, 999
Bst6I CTCTTC 6 cut(s) 416, 577, 784, 1012, 1037, 1235
BstAPI GCANNNNNTGC 1 cut(s) 757
BstBI TTCGAA 1 cut(s) 1010
BstDEI CTNAG 5 cut(s) 299, 324, 349, 777, 864
BstDSI CCRYGG 1 cut(s) 693
BstF5I GGATG 3 cut(s) 536, 1074, 1080
BstFNI CGCG 2 cut(s) 267, 695
BstHHI GCGC 2 cut(s) 269, 751
BstMAI GTCTC 6 cut(s) 111, 493, 543, 665, 1103, 1280
BstMWI GCNNNNNNNGC 8 cut(s) 203, 275, 284, 572, 714, 757, 865, 1202
BstNI CCWGG 2 cut(s) 906, 1259
BstSCI CCNGG 2 cut(s) 904, 1257
BstUI CGCG 2 cut(s) 267, 695
BstV1I GCAGC 1 cut(s) 1192
BstX2I RGATCY 5 cut(s) 163, 352, 464, 773, 842
BstYI RGATCY 5 cut(s) 163, 352, 464, 773, 842
Bsu15I ATCGAT 1 cut(s) 657
BsuI GTATCC 1 cut(s) 920
BsuRI GGCC 3 cut(s) 22, 665, 708
BsuTUI ATCGAT 1 cut(s) 657
BtgI CCRYGG 1 cut(s) 693
BtrI CACGTC 1 cut(s) 683
BtsCI GGATG 3 cut(s) 536, 1074, 1080
BtsIMutI CAGTG 1 cut(s) 229
CaiI CAGNNNCTG 1 cut(s) 760
CciI TCATGA 1 cut(s) 1099
CfoI GCGC 2 cut(s) 269, 751
Cfr13I GGNCC 1 cut(s) 707
Cfr42I CCGCGG 1 cut(s) 696
ClaI ATCGAT 1 cut(s) 657
CspCI CAANNNNNGTGG 2 cut(s) 349, 384
CviAII CATG 4 cut(s) 92, 238, 1100, 1201
DdeI CTNAG 5 cut(s) 299, 324, 349, 777, 864
DraIII CACNNNGTG 1 cut(s) 1272
Eam1104I CTCTTC 6 cut(s) 416, 577, 784, 1012, 1037, 1235
EarI CTCTTC 6 cut(s) 416, 577, 784, 1012, 1037, 1235
Eco130I CCWWGG 2 cut(s) 625, 1063
Eco24I GRGCYC 1 cut(s) 538
Eco32I GATATC 1 cut(s) 1264
Eco57I CTGAAG 3 cut(s) 291, 588, 1061
EcoRII CCWGG 2 cut(s) 904, 1257
EcoRV GATATC 1 cut(s) 1264
EcoT14I CCWWGG 2 cut(s) 625, 1063
EcoT22I ATGCAT 1 cut(s) 577
EcoT38I GRGCYC 1 cut(s) 538
ErhI CCWWGG 2 cut(s) 625, 1063
FaeI CATG 4 cut(s) 95, 241, 1103, 1204
FalI AAGNNNNNCTT 2 cut(s) 398, 430
FatI CATG 4 cut(s) 91, 237, 1099, 1200
FauI CCCGC 1 cut(s) 700
FbaI TGATCA 1 cut(s) 1096
Fnu4HI GCNGC 1 cut(s) 1206
FokI GGATG 3 cut(s) 543, 1081, 1087
FriOI GRGCYC 1 cut(s) 538
Fsp4HI GCNGC 1 cut(s) 1206
FspBI CTAG 2 cut(s) 462, 711
GlaI GCGC 2 cut(s) 268, 750
GluI GCNGC 1 cut(s) 1206
GsuI CTGGAG 1 cut(s) 228
HaeIII GGCC 3 cut(s) 22, 665, 708
HhaI GCGC 2 cut(s) 269, 751
Hin1II CATG 4 cut(s) 95, 241, 1103, 1204
Hin6I GCGC 2 cut(s) 267, 749
HinP1I GCGC 2 cut(s) 267, 749
HindIII AAGCTT 1 cut(s) 735
HinfI GANTC 6 cut(s) 83, 329, 429, 722, 958, 1285
HphI GGTGA 3 cut(s) 932, 944, 1106
Hpy166II GTNNAC 4 cut(s) 220, 446, 973, 1234
Hpy188I TCNGA 8 cut(s) 82, 116, 134, 302, 316, 540, 778, 1284
Hpy188III TCNNGA 5 cut(s) 167, 326, 335, 415, 1100
Hpy8I GTNNAC 4 cut(s) 220, 446, 973, 1234
Hpy99I CGWCG 2 cut(s) 684, 1060
HpyAV CCTTC 6 cut(s) 154, 187, 645, 813, 883, 1122
HpyCH4III ACNGT 5 cut(s) 122, 224, 886, 932, 999
HpyCH4IV ACGT 2 cut(s) 682, 942
HpyCH4V TGCA 5 cut(s) 50, 544, 575, 833, 992
HpyF10VI GCNNNNNNNGC 8 cut(s) 203, 275, 284, 572, 714, 757, 865, 1202
HpyF3I CTNAG 5 cut(s) 299, 324, 349, 777, 864
HpySE526I ACGT 2 cut(s) 682, 942
Hsp92II CATG 4 cut(s) 95, 241, 1103, 1204
HspAI GCGC 2 cut(s) 267, 749
Ksp22I TGATCA 1 cut(s) 1096
KspI CCGCGG 1 cut(s) 696
LguI GCTCTTC 2 cut(s) 416, 577
LmnI GCTCC 1 cut(s) 496
Lsp1109I GCAGC 1 cut(s) 1192
LweI GCATC 6 cut(s) 531, 562, 747, 820, 979, 1183
MaeI CTAG 2 cut(s) 462, 711
MaeII ACGT 2 cut(s) 682, 942
MaeIII GTNAC 3 cut(s) 513, 620, 1025
MflI RGATCY 5 cut(s) 163, 352, 464, 773, 842
MhlI GDGCHC 1 cut(s) 538
MluCI AATT 1 cut(s) 177
MlyI GAGTC 1 cut(s) 423
MmeI TCCRAC 1 cut(s) 94
Mph1103I ATGCAT 1 cut(s) 577
MroXI GAANNNNTTC 1 cut(s) 87
MseI TTAA 4 cut(s) 201, 291, 911, 980
MspA1I CMGCKG 1 cut(s) 695
MspR9I CCNGG 2 cut(s) 906, 1259
MvaI CCWGG 2 cut(s) 906, 1259
MvnI CGCG 2 cut(s) 267, 695
MwoI GCNNNNNNNGC 8 cut(s) 203, 275, 284, 572, 714, 757, 865, 1202
NlaIII CATG 4 cut(s) 95, 241, 1103, 1204
NlaIV GGNNCC 1 cut(s) 165
NsiI ATGCAT 1 cut(s) 577
NspV TTCGAA 1 cut(s) 1010
PagI TCATGA 1 cut(s) 1099
PciSI GCTCTTC 2 cut(s) 416, 577
PcsI WCGNNNNNNNCGW 1 cut(s) 1055
PdmI GAANNNNTTC 1 cut(s) 87
PfeI GAWTC 4 cut(s) 83, 329, 722, 958
PflMI CCANNNNNTGG 2 cut(s) 905, 1069
PfoI TCCNGGA 1 cut(s) 1257
PkrI GCNGC 1 cut(s) 1207
PleI GAGTC 1 cut(s) 423
PpsI GAGTC 1 cut(s) 423
PshBI ATTAAT 1 cut(s) 201
Psp6I CCWGG 2 cut(s) 904, 1257
PspGI CCWGG 2 cut(s) 904, 1257
PspN4I GGNNCC 1 cut(s) 165
PspPI GGNCC 1 cut(s) 707
PstNI CAGNNNCTG 1 cut(s) 760
PsuI RGATCY 5 cut(s) 163, 352, 464, 773, 842
SacII CCGCGG 1 cut(s) 696
SapI GCTCTTC 2 cut(s) 416, 577
SaqAI TTAA 4 cut(s) 201, 291, 911, 980
SatI GCNGC 1 cut(s) 1206
Sau96I GGNCC 1 cut(s) 707
SchI GAGTC 1 cut(s) 423
ScrFI CCNGG 2 cut(s) 906, 1259
SduI GDGCHC 1 cut(s) 538
SfaNI GCATC 6 cut(s) 531, 562, 747, 820, 979, 1183
Sfr303I CCGCGG 1 cut(s) 696
SfuI TTCGAA 1 cut(s) 1010
SgrBI CCGCGG 1 cut(s) 696
SmlI CTYRAG 2 cut(s) 468, 1247
SmoI CTYRAG 2 cut(s) 468, 1247
Sse9I AATT 1 cut(s) 177
SsiI CCGC 3 cut(s) 265, 693, 695
SspMI CTAG 2 cut(s) 462, 711
StyD4I CCNGG 2 cut(s) 904, 1257
StyI CCWWGG 2 cut(s) 625, 1063
TaaI ACNGT 5 cut(s) 122, 224, 886, 932, 999
TaiI ACGT 2 cut(s) 685, 945
TaqI TCGA 4 cut(s) 336, 657, 1010, 1058
TasI AATT 1 cut(s) 177
TfiI GAWTC 4 cut(s) 83, 329, 722, 958
Tru1I TTAA 4 cut(s) 201, 291, 911, 980
Tru9I TTAA 4 cut(s) 201, 291, 911, 980
TscAI CASTG 1 cut(s) 229
TseI GCWGC 1 cut(s) 1205
TspDTI ATGAA 3 cut(s) 80, 266, 656
TspGWI ACGGA 1 cut(s) 1172
TspRI CASTG 1 cut(s) 229
Van91I CCANNNNNTGG 2 cut(s) 905, 1069
VspI ATTAAT 1 cut(s) 201
XmnI GAANNNNTTC 1 cut(s) 87
XspI CTAG 2 cut(s) 462, 711
Zsp2I ATGCAT 1 cut(s) 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.