Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0011032

Physical Location & Seq

Genomic Coordinates Reverse (-)

6273723 .. 6276780

Gene Structure 3058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g11500.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

ATGATGCAAGATATGTGGAATGCTCCTCCCGGTTTCAGACCCACCAAATCTGCTCCTTCCTCTCCGGCCAAGCCTCTCGGAGTTTTGCGGACTCGCTCCGAGTCGTTCCATGTGACTCATAAGGTCCCAGTTGGTGACACCCCCTATGTCAGAGCCAAGAATGTTCAACTAGTGGATAAGGATCCAGAGAGGGCTATTCCTCTGTTCTGGGCTGCCATTAATTCCGGGGATAGAGTTGACAGTGCTTTGAAGGACATGGCTATTGTGATGAAGCAACAGAATAGGGCTGAGGAAGCAATTGAAGCTATCAAGTCATTGAGGCATCGGTGTTCGGATCAAGCACAGGAGTCACTTGACAACATTCTATTGGATCTTTATAAGAGATGTGGAAGATTGGATGATCAAATAGCGCTTTTGAGGCACAAGTTGTTCTTGATTCAACAAGGAATGGCTTTCAATGGCAAACGCACCAAAACTGCTAGATCTCAAGGGAAGAAGTTTCAAGTCTCTGTGGAACAAGAAGCCACTAGATTACTGGGGAACTTGGGGTGGGCTTTGATGCAGCAGAACAACTACATTGAAGCCGAAGATGCATACAGACGAGCACTAACAATTGCACCAGACAACAACAAGATGTGCAATCTCGGAATCTGCTTAATGAAGCAAGGAAGAATCACGGAGGCTAAGGAGAATCTCCGGCGAGTTAAGCCTGCGGTGGCTGATGGGCCAAGAGGAACAGATTCCCATCTCAAAGCCTATGAAAGGGCGCAGCAAATGCTCAAGGACTTGGAGTCTGAGATGATGAACAAGGGTCTGGATCGAGTCGAACAGAGCAGGCTTTTTGATGCCTTTCTTGGGTCCTCATCGATTTGGCAGCCTCAGCCTTGCAGAGACAATCACCACACCCCATTGCCGCCTCGAATGGAATCTGTCAAAATCGACGAGTTTTCTGACGAAAACATTAACTCCTTGCTGCTGACTCAGCCCAGAACCAAGGTTCTGCCTCCTCTTAGAAACAACAACAACAACAACGTGCTGAACTCACTGAATTGTGCTGCGCAGCCTTTTTACTCGAAGCAGGGCTCAATCGGAAATAGTACTCAATCTCAATGTGCTGAGACCCTTAAAAGGACTAGGTCTGGGAATGCTGCCAATATGAGAGTGACTGATGCAATTGAGATCCCAACAAAGCCTACTATGGAGCCTACCGTGGAGTTGGGTGTACCTGAAAACAAGACCAGAAGAAGGCTGTCACTTGAAGAAAATGAAGAGAACAACAAGATGGCTCAATTGTTGCCTGATAACAAGGACTTTGAGGATGCCATCATTGCTGCTATGATTGACCCAACAAATGAAGCAGGGAAGGCGATTGGCAATGGAAACAATGCAGGGATGTTTCCGAAGAAGATTGAGAAGAGGCTCAGGGTATTTCAAGACATTACTCTCTCCTTAAGTCCAAGGGCAAGGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

491

Amino Acids

55.05

Weight (kDa)

9.29

Isoelectric Point (pI)

53.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_2	PF07719	178 - 209	2.1e-07	Tetratricopeptide repeat
TPR_1	PF00515	178 - 209	3.6e-08	Tetratricopeptide repeat
TPR_19	PF14559	186 - 244	2.6e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51280
fragaria_vesca	FvH4_1g11500 FvH4_1g11500
malus_domestica	MD02G1127900.v1.1 MD15G1243100.v1.1
prunus_persica	Prupe.7G171000_v2.0.a1
pyrus_communis	pycom02g10000 pycom15g21420
rosa_chinensis	RchiOBHm_Chr2g0099121
rosa_laevigata	RLG00000016850
rosa_multiflora	Rmu_sc0009113.1_g000006 Rmu_sc0012098.1_g000002 Rmu_sc0034643.1_g000001
rosa_roxburghii	Rroxscaffold_2G00143420
rosa_rugosa	Rorug02G0076900
rosa_samantha	Rh2AG126000 Rh2BG129300 Rh2CG130300 Rh2DG130700
rosa_wichuraiana	Rw2G009710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	378
Acc16I	TGCGCA	1 cut(s)	1059
AciI	CCGC	3 cut(s)	88, 713, 914
AclWI	GGATC	6 cut(s)	176, 189, 342, 378, 825, 1174
AcoI	YGGCCR	1 cut(s)	66
AfaI	GTAC	2 cut(s)	1099, 1224
AfeI	AGCGCT	1 cut(s)	411
AfiI	CCNNNNNNNGG	4 cut(s)	762, 855, 1128, 1245
AflII	CTTAAG	1 cut(s)	1450
AgsI	TTSAA	9 cut(s)	167, 250, 302, 440, 457, 503, 581, 1259, 1433
AhdI	GACNNNNNGTC	1 cut(s)	790
AhlI	ACTAGT	1 cut(s)	169
AluBI	AGCT	1 cut(s)	305
AluI	AGCT	1 cut(s)	305
Alw21I	GWGCWC	1 cut(s)	607
Alw26I	GTCTC	3 cut(s)	511, 885, 1112
AlwI	GGATC	6 cut(s)	176, 189, 342, 378, 825, 1174
Aor51HI	AGCGCT	1 cut(s)	411
AoxI	GGCC	2 cut(s)	66, 725
ApeKI	GCWGC	9 cut(s)	212, 562, 769, 874, 973, 1055, 1060, 1148, 1331
AseI	ATTAAT	1 cut(s)	219
Asp700I	GAANNNNTTC	1 cut(s)	739
AspLEI	GCGC	3 cut(s)	412, 769, 1060
AspS9I	GGNCC	3 cut(s)	124, 725, 858
AsuC2I	CCSGG	2 cut(s)	30, 226
AsuHPI	GGTGA	2 cut(s)	146, 890
AvaII	GGWCC	2 cut(s)	124, 858
BamHI	GGATCC	1 cut(s)	181
BanII	GRGCYC	1 cut(s)	1085
Bbv12I	GWGCWC	1 cut(s)	607
BbvCI	CCTCAGC	2 cut(s)	288, 879
BbvI	GCAGC	9 cut(s)	199, 574, 781, 886, 960, 1042, 1072, 1135, 1318
BccI	CCATC	4 cut(s)	716, 753, 1276, 1331
BclI	TGATCA	1 cut(s)	400
BcnI	CCSGG	2 cut(s)	30, 226
BcoDI	GTCTC	3 cut(s)	511, 885, 1112
BcuI	ACTAGT	1 cut(s)	169
BfaI	CTAG	4 cut(s)	170, 480, 528, 1134
BfoI	RGCGCY	1 cut(s)	413
BfrI	CTTAAG	1 cut(s)	1450
BglII	AGATCT	1 cut(s)	482
BmcAI	AGTACT	1 cut(s)	1099
Bme1390I	CCNGG	2 cut(s)	30, 226
Bme18I	GGWCC	2 cut(s)	124, 858
BmeRI	GACNNNNNGTC	1 cut(s)	790
BmgT120I	GGNCC	3 cut(s)	124, 725, 858
BmiI	GGNNCC	4 cut(s)	126, 183, 859, 1203
BmrFI	CCNGG	2 cut(s)	30, 226
BmrI	ACTGGG	2 cut(s)	122, 545
BmsI	GCATC	6 cut(s)	331, 549, 580, 835, 1159, 1309
BmuI	ACTGGG	2 cut(s)	122, 545
Bpu10I	CCTNAGC	4 cut(s)	288, 684, 879, 1421
BpuEI	CTTGAG	2 cut(s)	471, 764
BpuMI	CCSGG	2 cut(s)	30, 226
Bsa29I	ATCGAT	1 cut(s)	866
BsaBI	GATNNNNATC	2 cut(s)	180, 744
BsaI	GGTCTC	1 cut(s)	1112
BsaJI	CCNNGG	4 cut(s)	225, 993, 1209, 1457
BsaXI	ACNNNNNCTCC	2 cut(s)	950, 980
Bsc4I	CCNNNNNNNGG	4 cut(s)	762, 855, 1128, 1245
Bse1I	ACTGG	2 cut(s)	128, 540
Bse3DI	GCAATG	3 cut(s)	908, 1326, 1381
Bse8I	GATNNNNATC	2 cut(s)	180, 744
BseCI	ATCGAT	1 cut(s)	866
BseDI	CCNNGG	4 cut(s)	225, 993, 1209, 1457
BseGI	GGATG	3 cut(s)	403, 1324, 1398
BseJI	GATNNNNATC	2 cut(s)	180, 744
BseLI	CCNNNNNNNGG	4 cut(s)	762, 855, 1128, 1245
BseMI	GCAATG	3 cut(s)	908, 1326, 1381
BseMII	CTCAG	6 cut(s)	279, 786, 893, 995, 1107, 1435
BseNI	ACTGG	2 cut(s)	128, 540
BseRI	GAGGAG	2 cut(s)	15, 996
BseXI	GCAGC	9 cut(s)	199, 574, 781, 886, 960, 1042, 1072, 1135, 1318
BshFI	GGCC	2 cut(s)	68, 727
BshVI	ATCGAT	1 cut(s)	866
BsiHKAI	GWGCWC	1 cut(s)	607
BsiSI	CCGG	4 cut(s)	30, 65, 225, 697
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	4 cut(s)	762, 855, 1128, 1245
BsmAI	GTCTC	3 cut(s)	511, 885, 1112
BsmFI	GGGAC	1 cut(s)	110
BsmI	GAATGC	2 cut(s)	25, 1150
BsnI	GGCC	2 cut(s)	68, 727
Bso31I	GGTCTC	1 cut(s)	1112
Bsp1286I	GDGCHC	2 cut(s)	607, 1085
Bsp143I	GATC	7 cut(s)	181, 334, 370, 400, 482, 817, 1179
BspACI	CCGC	3 cut(s)	88, 713, 914
BspANI	GGCC	2 cut(s)	68, 727
BspCNI	CTCAG	6 cut(s)	280, 787, 892, 994, 1108, 1434
BspDI	ATCGAT	1 cut(s)	866
BspLI	GGNNCC	4 cut(s)	126, 183, 859, 1203
BspPI	GGATC	6 cut(s)	176, 189, 342, 378, 825, 1174
BspTI	CTTAAG	1 cut(s)	1450
BspTNI	GGTCTC	1 cut(s)	1112
BsrDI	GCAATG	3 cut(s)	908, 1326, 1381
BsrI	ACTGG	2 cut(s)	128, 540
BssECI	CCNNGG	4 cut(s)	225, 993, 1209, 1457
BssMI	GATC	7 cut(s)	181, 334, 370, 400, 482, 817, 1179
BssT1I	CCWWGG	2 cut(s)	993, 1457
Bst4CI	ACNGT	2 cut(s)	242, 1210
Bst6I	CTCTTC	2 cut(s)	1263, 1409
BstAFI	CTTAAG	1 cut(s)	1450
BstAPI	GCANNNNNTGC	1 cut(s)	775
BstC8I	GCNNGC	2 cut(s)	711, 836
BstDEI	CTNAG	8 cut(s)	288, 684, 795, 879, 981, 1010, 1116, 1421
BstDSI	CCRYGG	1 cut(s)	1209
BstENI	CCTNNNNNAGG	1 cut(s)	760
BstF5I	GGATG	3 cut(s)	403, 1324, 1398
BstH2I	RGCGCY	1 cut(s)	413
BstHHI	GCGC	3 cut(s)	412, 769, 1060
BstKTI	GATC	7 cut(s)	184, 337, 373, 403, 485, 820, 1182
BstMAI	GTCTC	3 cut(s)	511, 885, 1112
BstMBI	GATC	7 cut(s)	181, 334, 370, 400, 482, 817, 1179
BstSCI	CCNGG	2 cut(s)	28, 224
BstV1I	GCAGC	9 cut(s)	199, 574, 781, 886, 960, 1042, 1072, 1135, 1318
BstX2I	RGATCY	4 cut(s)	181, 370, 482, 1179
BstYI	RGATCY	4 cut(s)	181, 370, 482, 1179
Bsu15I	ATCGAT	1 cut(s)	866
BsuRI	GGCC	2 cut(s)	68, 727
BsuTUI	ATCGAT	1 cut(s)	866
BtgI	CCRYGG	1 cut(s)	1209
BtsCI	GGATG	3 cut(s)	403, 1324, 1398
BtsIMutI	CAGTG	2 cut(s)	247, 1043
Cac8I	GCNNGC	2 cut(s)	711, 836
CfoI	GCGC	3 cut(s)	412, 769, 1060
Cfr13I	GGNCC	3 cut(s)	124, 725, 858
ClaI	ATCGAT	1 cut(s)	866
Csp6I	GTAC	2 cut(s)	1098, 1223
CspCI	CAANNNNNGTGG	1 cut(s)	31
CviAII	CATG	2 cut(s)	110, 256
CviQI	GTAC	2 cut(s)	1098, 1223
DdeI	CTNAG	8 cut(s)	288, 684, 795, 879, 981, 1010, 1116, 1421
DpnI	GATC	7 cut(s)	183, 336, 372, 402, 484, 819, 1181
DpnII	GATC	7 cut(s)	181, 334, 370, 400, 482, 817, 1179
DriI	GACNNNNNGTC	1 cut(s)	790
EaeI	YGGCCR	1 cut(s)	66
Eam1104I	CTCTTC	2 cut(s)	1263, 1409
Eam1105I	GACNNNNNGTC	1 cut(s)	790
EarI	CTCTTC	2 cut(s)	1263, 1409
Eco130I	CCWWGG	2 cut(s)	993, 1457
Eco24I	GRGCYC	1 cut(s)	1085
Eco31I	GGTCTC	1 cut(s)	1112
Eco47I	GGWCC	2 cut(s)	124, 858
Eco47III	AGCGCT	1 cut(s)	411
EcoNI	CCTNNNNNAGG	1 cut(s)	760
EcoO109I	RGGNCCY	2 cut(s)	124, 858
EcoT14I	CCWWGG	2 cut(s)	993, 1457
EcoT22I	ATGCAT	1 cut(s)	595
EcoT38I	GRGCYC	1 cut(s)	1085
ErhI	CCWWGG	2 cut(s)	993, 1457
FaeI	CATG	2 cut(s)	113, 259
FalI	AAGNNNNNCTT	2 cut(s)	416, 448
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	2 cut(s)	109, 255
FbaI	TGATCA	1 cut(s)	400
FokI	GGATG	3 cut(s)	410, 1331, 1405
FriOI	GRGCYC	1 cut(s)	1085
FspBI	CTAG	4 cut(s)	170, 480, 528, 1134
FspI	TGCGCA	1 cut(s)	1059
GlaI	GCGC	3 cut(s)	411, 768, 1059
HaeII	RGCGCY	1 cut(s)	413
HaeIII	GGCC	2 cut(s)	68, 727
HapII	CCGG	4 cut(s)	30, 65, 225, 697
HhaI	GCGC	3 cut(s)	412, 769, 1060
Hin1II	CATG	2 cut(s)	113, 259
Hin6I	GCGC	3 cut(s)	410, 767, 1058
HinP1I	GCGC	3 cut(s)	410, 767, 1058
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HpaII	CCGG	4 cut(s)	30, 65, 225, 697
HphI	GGTGA	2 cut(s)	146, 890
Hpy166II	GTNNAC	2 cut(s)	238, 1223
Hpy188III	TCNNGA	4 cut(s)	185, 433, 815, 1433
Hpy8I	GTNNAC	2 cut(s)	238, 1223
Hpy99I	CGWCG	1 cut(s)	944
HpyAV	CCTTC	4 cut(s)	66, 244, 1239, 1357
HpyCH4III	ACNGT	2 cut(s)	242, 1210
HpyCH4IV	ACGT	1 cut(s)	1032
HpyCH4V	TGCA	8 cut(s)	7, 562, 593, 617, 639, 888, 1172, 1388
HpyF3I	CTNAG	8 cut(s)	288, 684, 795, 879, 981, 1010, 1116, 1421
HpySE526I	ACGT	1 cut(s)	1032
Hsp92II	CATG	2 cut(s)	113, 259
HspAI	GCGC	3 cut(s)	410, 767, 1058
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	7 cut(s)	181, 334, 370, 400, 482, 817, 1179
LmnI	GCTCC	4 cut(s)	28, 58, 101, 1201
Lsp1109I	GCAGC	9 cut(s)	199, 574, 781, 886, 960, 1042, 1072, 1135, 1318
LweI	GCATC	6 cut(s)	331, 549, 580, 835, 1159, 1309
MaeI	CTAG	4 cut(s)	170, 480, 528, 1134
MaeII	ACGT	1 cut(s)	1032
MaeIII	GTNAC	5 cut(s)	112, 134, 348, 1162, 1251
MalI	GATC	7 cut(s)	183, 336, 372, 402, 484, 819, 1181
MboI	GATC	7 cut(s)	181, 334, 370, 400, 482, 817, 1179
MfeI	CAATTG	4 cut(s)	297, 612, 1173, 1289
MflI	RGATCY	4 cut(s)	181, 370, 482, 1179
MhlI	GDGCHC	2 cut(s)	607, 1085
MluCI	AATT	6 cut(s)	220, 297, 612, 1048, 1173, 1289
MlyI	GAGTC	7 cut(s)	85, 109, 110, 356, 800, 831, 973
Mph1103I	ATGCAT	1 cut(s)	595
MroXI	GAANNNNTTC	1 cut(s)	739
MseI	TTAA	7 cut(s)	219, 656, 705, 963, 1125, 1451, 1471
MspCI	CTTAAG	1 cut(s)	1450
MspI	CCGG	4 cut(s)	30, 65, 225, 697
MspR9I	CCNGG	2 cut(s)	30, 226
MunI	CAATTG	4 cut(s)	297, 612, 1173, 1289
Mva1269I	GAATGC	2 cut(s)	25, 1150
NciI	CCSGG	2 cut(s)	30, 226
NdeII	GATC	7 cut(s)	181, 334, 370, 400, 482, 817, 1179
NlaIII	CATG	2 cut(s)	113, 259
NlaIV	GGNNCC	4 cut(s)	126, 183, 859, 1203
NmuCI	GTSAC	5 cut(s)	112, 134, 348, 1162, 1251
NsbI	TGCGCA	1 cut(s)	1059
NsiI	ATGCAT	1 cut(s)	595
PctI	GAATGC	2 cut(s)	25, 1150
PdmI	GAANNNNTTC	1 cut(s)	739
PfeI	GAWTC	6 cut(s)	436, 648, 672, 691, 740, 926
PflFI	GACNNNGTC	1 cut(s)	1135
PleI	GAGTC	7 cut(s)	85, 109, 109, 355, 799, 830, 973
PpsI	GAGTC	7 cut(s)	85, 109, 109, 355, 799, 830, 973
PpuMI	RGGWCCY	2 cut(s)	124, 858
PshBI	ATTAAT	1 cut(s)	219
PsiI	TTATAA	1 cut(s)	378
Psp5II	RGGWCCY	2 cut(s)	124, 858
PspN4I	GGNNCC	4 cut(s)	126, 183, 859, 1203
PspPI	GGNCC	3 cut(s)	124, 725, 858
PspPPI	RGGWCCY	2 cut(s)	124, 858
PsuI	RGATCY	4 cut(s)	181, 370, 482, 1179
PsyI	GACNNNGTC	1 cut(s)	1135
RsaI	GTAC	2 cut(s)	1099, 1224
RsaNI	GTAC	2 cut(s)	1098, 1223
SaqAI	TTAA	7 cut(s)	219, 656, 705, 963, 1125, 1451, 1471
Sau3AI	GATC	7 cut(s)	181, 334, 370, 400, 482, 817, 1179
Sau96I	GGNCC	3 cut(s)	124, 725, 858
ScaI	AGTACT	1 cut(s)	1099
SchI	GAGTC	7 cut(s)	85, 109, 110, 356, 800, 831, 973
ScrFI	CCNGG	2 cut(s)	30, 226
SduI	GDGCHC	2 cut(s)	607, 1085
SetI	ASST	6 cut(s)	126, 307, 999, 1035, 1139, 1228
SfaNI	GCATC	6 cut(s)	331, 549, 580, 835, 1159, 1309
SinI	GGWCC	2 cut(s)	124, 858
SmlI	CTYRAG	3 cut(s)	486, 779, 1450
SmoI	CTYRAG	3 cut(s)	486, 779, 1450
SpeI	ACTAGT	1 cut(s)	169
Sse9I	AATT	6 cut(s)	220, 297, 612, 1048, 1173, 1289
SsiI	CCGC	3 cut(s)	88, 713, 914
SspMI	CTAG	4 cut(s)	170, 480, 528, 1134
StyD4I	CCNGG	2 cut(s)	28, 224
StyI	CCWWGG	2 cut(s)	993, 1457
TaaI	ACNGT	2 cut(s)	242, 1210
TaiI	ACGT	1 cut(s)	1035
TaqI	TCGA	6 cut(s)	820, 825, 866, 919, 939, 1073
TasI	AATT	6 cut(s)	220, 297, 612, 1048, 1173, 1289
TatI	WGTACW	1 cut(s)	1097
TauI	GCSGC	1 cut(s)	916
TfiI	GAWTC	6 cut(s)	436, 648, 672, 691, 740, 926
Tru1I	TTAA	7 cut(s)	219, 656, 705, 963, 1125, 1451, 1471
Tru9I	TTAA	7 cut(s)	219, 656, 705, 963, 1125, 1451, 1471
TscAI	CASTG	2 cut(s)	247, 1050
TseFI	GTSAC	5 cut(s)	112, 134, 348, 1162, 1251
TseI	GCWGC	9 cut(s)	212, 562, 769, 874, 973, 1055, 1060, 1148, 1331
Tsp45I	GTSAC	5 cut(s)	112, 134, 348, 1162, 1251
TspDTI	ATGAA	6 cut(s)	284, 674, 774, 818, 1281, 1368
TspGWI	ACGGA	1 cut(s)	692
TspRI	CASTG	2 cut(s)	247, 1050
Tth111I	GACNNNGTC	1 cut(s)	1135
Vha464I	CTTAAG	1 cut(s)	1450
VpaK11BI	GGWCC	2 cut(s)	124, 858
VspI	ATTAAT	1 cut(s)	219
XagI	CCTNNNNNAGG	1 cut(s)	760
XcmI	CCANNNNNNNNNTGG	1 cut(s)	532
XmnI	GAANNNNTTC	1 cut(s)	739
XspI	CTAG	4 cut(s)	170, 480, 528, 1134
ZrmI	AGTACT	1 cut(s)	1099
Zsp2I	ATGCAT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.