Rmu_sc0034643.1_g000001

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0034643.1
OG0011032
Physical Location & Seq
Forward (+)
1 .. 1408
1408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0034643.1_g000001.1.cds

Sequence Viewer

Length: 1128 bp
tgttcggatcaagcccaggagtcacttgacaacattctattggatctttacaagagatgtggaagattggatgatcaaatagcacttttgaggcacaagttgttcttgattcaacaaggaatggctttcaatggaaaacgtaccaaaactgccagatctcaagggaagaaatttcaagtctctgtggaacaagaagccactagattactggggaatttggggtgggctttgatgcagcagaacaactacattgaagccgaagatgcataccggcgagcactaactatagcaccagacaacaacaaaatgtgcaatctcggcatctgcttaatgaagcaaggaagaatctcggaagctaaagagaatctccggcgagtcaagcctgcggtggctgatgggccaagaggaacagattctcatctcaaagcctatgaaagggcgcagcaaatgctcaaggacttagagtctgagatgatgaacaagggtctggaccgggtagagcagagccggcttttcgatgcctttcttgggtcctcgtcgatttggcagccccagccttgcagagacaatcaccacaccacattgcctccagtggaatctgtcaaaatcgatgagtttgcggacgaaaacatcaactccttgctgcaaactcagcccagaaccaaagttctgcctccccttggaaacaacaacgcacttaactcactgaattgtgctgcacagcctttttactcgaagctcattcctggtccaatagggaatgatggttctcaatctcaatgtgctgagacccttaagaggactaggtctgggaatgctgccaatatgagagtgactgatgcaattgagatcccaacaaagcctactgtggagttgggtgtaccggaaaacaagacccgaagaaggctgtcacttgaggaaaatgaagagaacaagttggctcagtttttgcctgatagcaaggactttgaagaggccatcattgctgctgtgattgacccaacaaatgaagcagcgaaggcgattggcaatggaaacaattcggggatgtttccaaagaagattgagaagaggctcagggtatttcaagacattactctctctttaagtccaagggcaagggcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

375

Amino Acids

41.9

Weight (kDa)

8.74

Isoelectric Point (pI)

53.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Orthologous Genes (Group: OG0011032)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51280
fragaria_vesca FvH4_1g11500 FvH4_1g11500
malus_domestica MD02G1127900.v1.1 MD15G1243100.v1.1
prunus_persica Prupe.7G171000_v2.0.a1
pyrus_communis pycom02g10000 pycom15g21420
rosa_chinensis RchiOBHm_Chr2g0099121
rosa_laevigata RLG00000016850
rosa_multiflora Rmu_sc0009113.1_g000006 Rmu_sc0012098.1_g000002 Rmu_sc0034643.1_g000001
rosa_roxburghii Rroxscaffold_2G00143420
rosa_rugosa Rorug02G0076900
rosa_samantha Rh2AG126000 Rh2BG129300 Rh2CG130300 Rh2DG130700
rosa_wichuraiana Rw2G009710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 386, 620
AclWI GGATC 3 cut(s) 15, 51, 844
AcsI RAATTY 2 cut(s) 170, 214
AfaI GTAC 2 cut(s) 142, 882
AfiI CCNNNNNNNGG 5 cut(s) 435, 528, 680, 798, 903
AflII CTTAAG 1 cut(s) 794
AgsI TTSAA 6 cut(s) 113, 130, 176, 254, 971, 1088
AhdI GACNNNNNGTC 1 cut(s) 463
AjnI CCWGG 2 cut(s) 15, 745
AloI GAACNNNNNNTCC 2 cut(s) 751, 783
AluBI AGCT 2 cut(s) 356, 739
AluI AGCT 2 cut(s) 356, 739
Alw21I GWGCWC 1 cut(s) 280
Alw26I GTCTC 3 cut(s) 184, 558, 782
AlwI GGATC 3 cut(s) 15, 51, 844
AoxI GGCC 3 cut(s) 398, 975, 1122
ApeKI GCWGC 8 cut(s) 235, 442, 547, 643, 716, 818, 986, 1013
ApoI RAATTY 2 cut(s) 170, 214
Asp700I GAANNNNTTC 2 cut(s) 412, 1039
AspLEI GCGC 1 cut(s) 442
AspS9I GGNCC 5 cut(s) 398, 490, 531, 749, 1122
AsuC2I CCSGG 1 cut(s) 494
AsuHPI GGTGA 1 cut(s) 563
AvaII GGWCC 3 cut(s) 490, 531, 749
Bbv12I GWGCWC 1 cut(s) 280
BbvI GCAGC 8 cut(s) 247, 454, 559, 630, 703, 805, 973, 1025
BccI CCATC 3 cut(s) 389, 758, 986
BcgI CGANNNNNNTGC 2 cut(s) 599, 633
BciT130I CCWGG 2 cut(s) 17, 747
BclI TGATCA 1 cut(s) 73
BcnI CCSGG 1 cut(s) 494
BcoDI GTCTC 3 cut(s) 184, 558, 782
BfaI CTAG 2 cut(s) 201, 804
BfmI CTRYAG 1 cut(s) 285
BfrI CTTAAG 1 cut(s) 794
BglII AGATCT 1 cut(s) 155
BisI GCNGC 8 cut(s) 236, 443, 548, 644, 717, 819, 987, 1014
BlsI GCNGC 8 cut(s) 237, 444, 549, 645, 718, 820, 988, 1015
Bme1390I CCNGG 3 cut(s) 17, 494, 747
Bme18I GGWCC 3 cut(s) 490, 531, 749
BmeRI GACNNNNNGTC 1 cut(s) 463
BmgT120I GGNCC 5 cut(s) 398, 490, 531, 749, 1122
BmiI GGNNCC 1 cut(s) 532
BmrFI CCNGG 3 cut(s) 17, 494, 747
BmrI ACTGGG 1 cut(s) 218
BmsI GCATC 5 cut(s) 222, 253, 330, 508, 829
BmuI ACTGGG 1 cut(s) 218
BpmI CTGGAG 1 cut(s) 573
Bpu10I CCTNAGC 1 cut(s) 1076
BpuEI CTTGAG 3 cut(s) 144, 437, 935
BpuMI CCSGG 1 cut(s) 494
Bsa29I ATCGAT 1 cut(s) 609
BsaBI GATNNNNATC 1 cut(s) 417
BsaI GGTCTC 1 cut(s) 782
BsaJI CCNNGG 3 cut(s) 15, 679, 1112
BsaWI WCCGGW 1 cut(s) 883
BsaXI ACNNNNNCTCC 4 cut(s) 571, 601, 620, 650
Bsc4I CCNNNNNNNGG 5 cut(s) 435, 528, 680, 798, 903
Bse118I RCCGGY 2 cut(s) 270, 507
Bse1I ACTGG 2 cut(s) 213, 590
Bse3DI GCAATG 3 cut(s) 581, 981, 1036
Bse8I GATNNNNATC 1 cut(s) 417
BseBI CCWGG 2 cut(s) 17, 747
BseCI ATCGAT 1 cut(s) 609
BseDI CCNNGG 3 cut(s) 15, 679, 1112
BseGI GGATG 2 cut(s) 76, 1053
BseJI GATNNNNATC 1 cut(s) 417
BseLI CCNNNNNNNGG 5 cut(s) 435, 528, 680, 798, 903
BseMI GCAATG 3 cut(s) 581, 981, 1036
BseMII CTCAG 5 cut(s) 459, 665, 777, 956, 1090
BseNI ACTGG 2 cut(s) 213, 590
BseXI GCAGC 8 cut(s) 247, 454, 559, 630, 703, 805, 973, 1025
BseYI CCCAGC 1 cut(s) 552
BsgI GTGCAG 1 cut(s) 702
BshFI GGCC 3 cut(s) 400, 977, 1124
BshVI ATCGAT 1 cut(s) 609
BsiHKAI GWGCWC 1 cut(s) 280
BsiSI CCGG 5 cut(s) 271, 370, 493, 508, 884
BslI CCNNNNNNNGG 5 cut(s) 435, 528, 680, 798, 903
BsmAI GTCTC 3 cut(s) 184, 558, 782
BsmI GAATGC 1 cut(s) 820
BsnI GGCC 3 cut(s) 400, 977, 1124
Bso31I GGTCTC 1 cut(s) 782
Bsp1286I GDGCHC 1 cut(s) 280
Bsp143I GATC 5 cut(s) 7, 43, 73, 155, 849
BspACI CCGC 2 cut(s) 386, 620
BspANI GGCC 3 cut(s) 400, 977, 1124
BspCNI CTCAG 5 cut(s) 460, 664, 778, 955, 1089
BspDI ATCGAT 1 cut(s) 609
BspLI GGNNCC 1 cut(s) 532
BspPI GGATC 3 cut(s) 15, 51, 844
BspTI CTTAAG 1 cut(s) 794
BspTNI GGTCTC 1 cut(s) 782
BsrDI GCAATG 3 cut(s) 581, 981, 1036
BsrFI RCCGGY 2 cut(s) 270, 507
BsrI ACTGG 2 cut(s) 213, 590
BssAI RCCGGY 2 cut(s) 270, 507
BssECI CCNNGG 3 cut(s) 15, 679, 1112
BssMI GATC 5 cut(s) 7, 43, 73, 155, 849
BssT1I CCWWGG 2 cut(s) 679, 1112
Bst2UI CCWGG 2 cut(s) 17, 747
Bst4CI ACNGT 1 cut(s) 868
Bst6I CTCTTC 3 cut(s) 921, 966, 1064
BstAFI CTTAAG 1 cut(s) 794
BstAPI GCANNNNNTGC 1 cut(s) 448
BstC8I GCNNGC 3 cut(s) 276, 384, 509
BstDEI CTNAG 6 cut(s) 460, 468, 651, 786, 942, 1076
BstENI CCTNNNNNAGG 1 cut(s) 433
BstF5I GGATG 2 cut(s) 76, 1053
BstHHI GCGC 1 cut(s) 442
BstKTI GATC 5 cut(s) 10, 46, 76, 158, 852
BstMAI GTCTC 3 cut(s) 184, 558, 782
BstMBI GATC 5 cut(s) 7, 43, 73, 155, 849
BstMWI GCNNNNNNNGC 9 cut(s) 263, 318, 379, 448, 508, 553, 652, 983, 1019
BstNI CCWGG 2 cut(s) 17, 747
BstSCI CCNGG 3 cut(s) 15, 492, 745
BstSFI CTRYAG 1 cut(s) 285
BstV1I GCAGC 8 cut(s) 247, 454, 559, 630, 703, 805, 973, 1025
BstX2I RGATCY 3 cut(s) 43, 155, 849
BstYI RGATCY 3 cut(s) 43, 155, 849
Bsu15I ATCGAT 1 cut(s) 609
BsuRI GGCC 3 cut(s) 400, 977, 1124
BsuTUI ATCGAT 1 cut(s) 609
BtsCI GGATG 2 cut(s) 76, 1053
BtsIMutI CAGTG 2 cut(s) 597, 704
Cac8I GCNNGC 3 cut(s) 276, 384, 509
CfoI GCGC 1 cut(s) 442
Cfr10I RCCGGY 2 cut(s) 270, 507
Cfr13I GGNCC 5 cut(s) 398, 490, 531, 749, 1122
ClaI ATCGAT 1 cut(s) 609
Csp6I GTAC 2 cut(s) 141, 881
CspCI CAANNNNNGTGG 2 cut(s) 40, 75
CviQI GTAC 2 cut(s) 141, 881
DdeI CTNAG 6 cut(s) 460, 468, 651, 786, 942, 1076
DpnI GATC 5 cut(s) 9, 45, 75, 157, 851
DpnII GATC 5 cut(s) 7, 43, 73, 155, 849
DriI GACNNNNNGTC 1 cut(s) 463
Eam1104I CTCTTC 3 cut(s) 921, 966, 1064
Eam1105I GACNNNNNGTC 1 cut(s) 463
EarI CTCTTC 3 cut(s) 921, 966, 1064
Eco130I CCWWGG 2 cut(s) 679, 1112
Eco31I GGTCTC 1 cut(s) 782
Eco47I GGWCC 3 cut(s) 490, 531, 749
EcoNI CCTNNNNNAGG 1 cut(s) 433
EcoO109I RGGNCCY 2 cut(s) 531, 1122
EcoRII CCWGG 2 cut(s) 15, 745
EcoT14I CCWWGG 2 cut(s) 679, 1112
EcoT22I ATGCAT 1 cut(s) 268
ErhI CCWWGG 2 cut(s) 679, 1112
FaiI YATR 4 cut(s) 268, 287, 432, 827
FalI AAGNNNNNCTT 2 cut(s) 89, 121
FbaI TGATCA 1 cut(s) 73
Fnu4HI GCNGC 8 cut(s) 236, 443, 548, 644, 717, 819, 987, 1014
FokI GGATG 2 cut(s) 83, 1060
Fsp4HI GCNGC 8 cut(s) 236, 443, 548, 644, 717, 819, 987, 1014
FspBI CTAG 2 cut(s) 201, 804
GlaI GCGC 1 cut(s) 441
GluI GCNGC 8 cut(s) 236, 443, 548, 644, 717, 819, 987, 1014
GsaI CCCAGC 1 cut(s) 556
GsuI CTGGAG 1 cut(s) 573
HaeIII GGCC 3 cut(s) 400, 977, 1124
HapII CCGG 5 cut(s) 271, 370, 493, 508, 884
HhaI GCGC 1 cut(s) 442
Hin6I GCGC 1 cut(s) 440
HinP1I GCGC 1 cut(s) 440
HinfI GANTC 8 cut(s) 20, 109, 345, 364, 375, 413, 464, 596
HpaII CCGG 5 cut(s) 271, 370, 493, 508, 884
HphI GGTGA 1 cut(s) 563
Hpy166II GTNNAC 1 cut(s) 881
Hpy188I TCNGA 3 cut(s) 7, 352, 469
Hpy188III TCNNGA 3 cut(s) 106, 488, 1088
Hpy8I GTNNAC 1 cut(s) 881
Hpy99I CGWCG 1 cut(s) 541
HpyAV CCTTC 2 cut(s) 897, 1012
HpyCH4III ACNGT 1 cut(s) 868
HpyCH4IV ACGT 1 cut(s) 139
HpyCH4V TGCA 7 cut(s) 235, 266, 312, 561, 646, 719, 842
HpyF10VI GCNNNNNNNGC 9 cut(s) 263, 318, 379, 448, 508, 553, 652, 983, 1019
HpyF3I CTNAG 6 cut(s) 460, 468, 651, 786, 942, 1076
HpySE526I ACGT 1 cut(s) 139
HspAI GCGC 1 cut(s) 440
KroI GCCGGC 1 cut(s) 507
KroNI GCCGGC 1 cut(s) 509
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 5 cut(s) 7, 43, 73, 155, 849
Lsp1109I GCAGC 8 cut(s) 247, 454, 559, 630, 703, 805, 973, 1025
LweI GCATC 5 cut(s) 222, 253, 330, 508, 829
MaeI CTAG 2 cut(s) 201, 804
MaeII ACGT 1 cut(s) 139
MaeIII GTNAC 3 cut(s) 21, 832, 909
MalI GATC 5 cut(s) 9, 45, 75, 157, 851
MboI GATC 5 cut(s) 7, 43, 73, 155, 849
MboII GAAGA 9 cut(s) 75, 178, 272, 354, 912, 938, 983, 1072, 1081
MfeI CAATTG 1 cut(s) 843
MflI RGATCY 3 cut(s) 43, 155, 849
MhlI GDGCHC 1 cut(s) 280
MluCI AATT 5 cut(s) 170, 214, 709, 843, 1039
MlyI GAGTC 3 cut(s) 29, 384, 473
MnlI CCTC 9 cut(s) 84, 398, 544, 597, 684, 792, 910, 967, 1065
Mph1103I ATGCAT 1 cut(s) 268
MroNI GCCGGC 1 cut(s) 507
MroXI GAANNNNTTC 2 cut(s) 412, 1039
MseI TTAA 4 cut(s) 329, 699, 795, 1106
MspCI CTTAAG 1 cut(s) 794
MspI CCGG 5 cut(s) 271, 370, 493, 508, 884
MspR9I CCNGG 3 cut(s) 17, 494, 747
MunI CAATTG 1 cut(s) 843
Mva1269I GAATGC 1 cut(s) 820
MvaI CCWGG 2 cut(s) 17, 747
MwoI GCNNNNNNNGC 9 cut(s) 263, 318, 379, 448, 508, 553, 652, 983, 1019
NaeI GCCGGC 1 cut(s) 509
NciI CCSGG 1 cut(s) 494
NdeII GATC 5 cut(s) 7, 43, 73, 155, 849
NgoMIV GCCGGC 1 cut(s) 507
NlaIV GGNNCC 1 cut(s) 532
NmeAIII GCCGAG 1 cut(s) 297
NmuCI GTSAC 3 cut(s) 21, 832, 909
NsiI ATGCAT 1 cut(s) 268
PctI GAATGC 1 cut(s) 820
PdiI GCCGGC 1 cut(s) 509
PdmI GAANNNNTTC 2 cut(s) 412, 1039
PfeI GAWTC 5 cut(s) 109, 345, 364, 413, 596
PflFI GACNNNGTC 1 cut(s) 805
PkrI GCNGC 8 cut(s) 237, 444, 549, 645, 718, 820, 988, 1015
PleI GAGTC 3 cut(s) 28, 383, 472
PpsI GAGTC 3 cut(s) 28, 383, 472
PpuMI RGGWCCY 1 cut(s) 531
Psp5II RGGWCCY 1 cut(s) 531
Psp6I CCWGG 2 cut(s) 15, 745
PspFI CCCAGC 1 cut(s) 552
PspGI CCWGG 2 cut(s) 15, 745
PspN4I GGNNCC 1 cut(s) 532
PspPI GGNCC 5 cut(s) 398, 490, 531, 749, 1122
PspPPI RGGWCCY 1 cut(s) 531
PsuI RGATCY 3 cut(s) 43, 155, 849
PsyI GACNNNGTC 1 cut(s) 805
RsaI GTAC 2 cut(s) 142, 882
RsaNI GTAC 2 cut(s) 141, 881
SaqAI TTAA 4 cut(s) 329, 699, 795, 1106
SatI GCNGC 8 cut(s) 236, 443, 548, 644, 717, 819, 987, 1014
Sau3AI GATC 5 cut(s) 7, 43, 73, 155, 849
Sau96I GGNCC 5 cut(s) 398, 490, 531, 749, 1122
SchI GAGTC 3 cut(s) 29, 384, 473
ScrFI CCNGG 3 cut(s) 17, 494, 747
SduI GDGCHC 1 cut(s) 280
SetI ASST 4 cut(s) 142, 358, 741, 809
SfaNI GCATC 5 cut(s) 222, 253, 330, 508, 829
SfcI CTRYAG 1 cut(s) 285
SinI GGWCC 3 cut(s) 490, 531, 749
SmlI CTYRAG 4 cut(s) 159, 452, 794, 914
SmoI CTYRAG 4 cut(s) 159, 452, 794, 914
Sse9I AATT 5 cut(s) 170, 214, 709, 843, 1039
SsiI CCGC 2 cut(s) 386, 620
SspMI CTAG 2 cut(s) 201, 804
StyD4I CCNGG 3 cut(s) 15, 492, 745
StyI CCWWGG 2 cut(s) 679, 1112
TaaI ACNGT 1 cut(s) 868
TaiI ACGT 1 cut(s) 142
TaqI TCGA 4 cut(s) 516, 539, 609, 734
TasI AATT 5 cut(s) 170, 214, 709, 843, 1039
TfiI GAWTC 5 cut(s) 109, 345, 364, 413, 596
Tru1I TTAA 4 cut(s) 329, 699, 795, 1106
Tru9I TTAA 4 cut(s) 329, 699, 795, 1106
TscAI CASTG 2 cut(s) 597, 711
TseFI GTSAC 3 cut(s) 21, 832, 909
TseI GCWGC 8 cut(s) 235, 442, 547, 643, 716, 818, 986, 1013
Tsp45I GTSAC 3 cut(s) 21, 832, 909
TspDTI ATGAA 5 cut(s) 347, 447, 491, 939, 1023
TspRI CASTG 2 cut(s) 597, 711
Tth111I GACNNNGTC 1 cut(s) 805
Vha464I CTTAAG 1 cut(s) 794
VpaK11BI GGWCC 3 cut(s) 490, 531, 749
XagI CCTNNNNNAGG 1 cut(s) 433
XapI RAATTY 2 cut(s) 170, 214
XcmI CCANNNNNNNNNTGG 1 cut(s) 205
XmnI GAANNNNTTC 2 cut(s) 412, 1039
XspI CTAG 2 cut(s) 201, 804
Zsp2I ATGCAT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.