Rh2AG126000

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0011032
Physical Location & Seq
Reverse (-)
11454683 .. 11457163
2481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG126000.1

Sequence Viewer

Length: 1200 bp
ATGGCCATTGTGATGAAGCAACAGAATAGGGCTGAGGAAGCCATTGAAGCCATCAAGTCATTGAGACATCGATGTTCGGATCAAGCCCAGGAGTCACTTGACAACATTCTATTGGATCTTTACAAGAGATGTGGAAGATTGGATGATCAAATAGCACTTTTGAGGCACAAGTTGTTCTTGATTCAACAAGGAATGGCTTTCAATGGAAAACGTACCAAAACTGCCAGATCTCAAGGGAAGAAATTTCAAGTCTCTGTGGAACAAGAAGCCACTAGATTACTGGGGAATTTGGGGTGGGCTTTGATGCAGCAGAACAACTACATTGAAGCCGAAGATGCATACCGGCGAGCACTAACTATAGCACCAGACAACAACAAAATGTGCAATCTCGGAATCTGCTTAATGAAGCAAGGAAGAATCTCGGAGGCTAAAGAGAATCTCCGGCGAGTCAAGCCTGCCGTGGCTGATGGGCCAAGAGGAACAGATTCACATCTTAAAGCCTATGAAAGGGCGCAGCAAATGCTCAAGGACTTAGAGTCTGAGATGATGAACAAGGGTCTGGACCGGGTAGAGCAGAGCCGGCTTTTTGATGCCTTTCTTGGGTCCTCATCGATTTGGCAGCCCCAGCCTTGCAGAGACAATCACCACACCACATTGCCTCCAGTGGAATCTGTCAAAATCGATGAGTTTGCGGACGAAAACATCAACTCCTTGCTGCTAACTCAGCCCAGAACCAAAGTTCTGCCTCCCCTTGGAAACAACAACGCACTTAACTCACTGAATTGTGCTGCACAGCCTTTTTACTCGAAGCTCATTCCTGGTCCAATAGGGAATGATGGTTCTCAATCTCAATGTGCTGAGACCCTTAAGAGGACTAGGTCTGGGAATGCTGCCAATATGAGAGTGACTGATGCAATTGAGATCCCAACAAAGCCTACTGTGGAGTTGGGTGTACCGGAAAACAAGACTCGAAGAAGGCTGTCACTTGAGGAAAATGAAGAGAACAAATTGGCTCAGTTTTTGCCTGATAGCAAGGACTTTGAAGAGGCCATCATTGCTGCTGTGATTGACCCAACAAATGAAGCAGCGAAGGCGATTGGCAATGGAAACAATTCGGGGATGTTTCCAAAGAAGATTGAGAAGAGGCTCAGGGTGTTTCAAGACATTACTCTCTCTTTAAGTCCGAGGGCAAGGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

399

Amino Acids

44.69

Weight (kDa)

8.96

Isoelectric Point (pI)

53.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_2 PF07719 93 - 124 1.6e-07 Tetratricopeptide repeat
TPR_1 PF00515 93 - 124 2.8e-08 Tetratricopeptide repeat
TPR_19 PF14559 101 - 159 9.6e-07 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011032)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51280
fragaria_vesca FvH4_1g11500 FvH4_1g11500
malus_domestica MD02G1127900.v1.1 MD15G1243100.v1.1
prunus_persica Prupe.7G171000_v2.0.a1
pyrus_communis pycom02g10000 pycom15g21420
rosa_chinensis RchiOBHm_Chr2g0099121
rosa_laevigata RLG00000016850
rosa_multiflora Rmu_sc0009113.1_g000006 Rmu_sc0012098.1_g000002 Rmu_sc0034643.1_g000001
rosa_roxburghii Rroxscaffold_2G00143420
rosa_rugosa Rorug02G0076900
rosa_samantha Rh2AG126000 Rh2BG129300 Rh2CG130300 Rh2DG130700
rosa_wichuraiana Rw2G009710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 692
AclWI GGATC 3 cut(s) 87, 123, 916
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 242, 286
AfaI GTAC 2 cut(s) 214, 954
AfiI CCNNNNNNNGG 4 cut(s) 507, 600, 752, 870
AflII CTTAAG 1 cut(s) 866
AgsI TTSAA 7 cut(s) 47, 185, 202, 248, 326, 1043, 1160
AhdI GACNNNNNGTC 1 cut(s) 535
AjnI CCWGG 2 cut(s) 87, 817
AloI GAACNNNNNNTCC 2 cut(s) 823, 855
AluBI AGCT 1 cut(s) 811
AluI AGCT 1 cut(s) 811
Alw21I GWGCWC 1 cut(s) 352
Alw26I GTCTC 4 cut(s) 58, 256, 630, 854
AlwI GGATC 3 cut(s) 87, 123, 916
AoxI GGCC 4 cut(s) 3, 470, 1047, 1194
ApeKI GCWGC 8 cut(s) 307, 514, 619, 715, 788, 890, 1058, 1085
ApoI RAATTY 2 cut(s) 242, 286
Asp700I GAANNNNTTC 2 cut(s) 484, 1111
AspLEI GCGC 1 cut(s) 514
AspS9I GGNCC 5 cut(s) 470, 562, 603, 821, 1194
AsuC2I CCSGG 1 cut(s) 566
AsuHPI GGTGA 1 cut(s) 635
AvaII GGWCC 3 cut(s) 562, 603, 821
BalI TGGCCA 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 352
BbvCI CCTCAGC 1 cut(s) 33
BbvI GCAGC 8 cut(s) 319, 526, 631, 702, 775, 877, 1045, 1097
BccI CCATC 4 cut(s) 59, 461, 830, 1058
BceAI ACGGC 1 cut(s) 443
BcgI CGANNNNNNTGC 2 cut(s) 671, 705
BciT130I CCWGG 2 cut(s) 89, 819
BclI TGATCA 1 cut(s) 145
BcnI CCSGG 1 cut(s) 566
BcoDI GTCTC 4 cut(s) 58, 256, 630, 854
BfaI CTAG 2 cut(s) 273, 876
BfmI CTRYAG 1 cut(s) 357
BfrI CTTAAG 1 cut(s) 866
BglII AGATCT 1 cut(s) 227
BisI GCNGC 8 cut(s) 308, 515, 620, 716, 789, 891, 1059, 1086
BlsI GCNGC 8 cut(s) 309, 516, 621, 717, 790, 892, 1060, 1087
Bme1390I CCNGG 3 cut(s) 89, 566, 819
Bme18I GGWCC 3 cut(s) 562, 603, 821
BmeRI GACNNNNNGTC 1 cut(s) 535
BmgT120I GGNCC 5 cut(s) 470, 562, 603, 821, 1194
BmiI GGNNCC 1 cut(s) 604
BmrFI CCNGG 3 cut(s) 89, 566, 819
BmrI ACTGGG 1 cut(s) 290
BmsI GCATC 4 cut(s) 294, 325, 580, 901
BmuI ACTGGG 1 cut(s) 290
BpmI CTGGAG 1 cut(s) 645
Bpu10I CCTNAGC 2 cut(s) 33, 1148
BpuEI CTTGAG 3 cut(s) 216, 509, 1007
BpuMI CCSGG 1 cut(s) 566
Bsa29I ATCGAT 3 cut(s) 70, 611, 681
BsaBI GATNNNNATC 1 cut(s) 489
BsaI GGTCTC 1 cut(s) 854
BsaJI CCNNGG 4 cut(s) 87, 459, 751, 1184
BsaWI WCCGGW 1 cut(s) 955
BsaXI ACNNNNNCTCC 4 cut(s) 643, 673, 692, 722
Bsc4I CCNNNNNNNGG 4 cut(s) 507, 600, 752, 870
Bse118I RCCGGY 2 cut(s) 342, 579
Bse1I ACTGG 2 cut(s) 285, 662
Bse3DI GCAATG 3 cut(s) 653, 1053, 1108
Bse8I GATNNNNATC 1 cut(s) 489
BseBI CCWGG 2 cut(s) 89, 819
BseCI ATCGAT 3 cut(s) 70, 611, 681
BseDI CCNNGG 4 cut(s) 87, 459, 751, 1184
BseGI GGATG 2 cut(s) 148, 1125
BseJI GATNNNNATC 1 cut(s) 489
BseLI CCNNNNNNNGG 4 cut(s) 507, 600, 752, 870
BseMI GCAATG 3 cut(s) 653, 1053, 1108
BseMII CTCAG 6 cut(s) 24, 531, 737, 849, 1028, 1162
BseNI ACTGG 2 cut(s) 285, 662
BseXI GCAGC 8 cut(s) 319, 526, 631, 702, 775, 877, 1045, 1097
BseYI CCCAGC 1 cut(s) 624
BsgI GTGCAG 1 cut(s) 774
BshFI GGCC 4 cut(s) 5, 472, 1049, 1196
BshVI ATCGAT 3 cut(s) 70, 611, 681
BsiHKAI GWGCWC 1 cut(s) 352
BsiSI CCGG 5 cut(s) 343, 442, 565, 580, 956
BslI CCNNNNNNNGG 4 cut(s) 507, 600, 752, 870
BsmAI GTCTC 4 cut(s) 58, 256, 630, 854
BsmI GAATGC 1 cut(s) 892
BsnI GGCC 4 cut(s) 5, 472, 1049, 1196
Bso31I GGTCTC 1 cut(s) 854
Bsp1286I GDGCHC 1 cut(s) 352
Bsp143I GATC 5 cut(s) 79, 115, 145, 227, 921
BspACI CCGC 1 cut(s) 692
BspANI GGCC 4 cut(s) 5, 472, 1049, 1196
BspCNI CTCAG 6 cut(s) 25, 532, 736, 850, 1027, 1161
BspDI ATCGAT 3 cut(s) 70, 611, 681
BspLI GGNNCC 1 cut(s) 604
BspPI GGATC 3 cut(s) 87, 123, 916
BspTI CTTAAG 1 cut(s) 866
BspTNI GGTCTC 1 cut(s) 854
BsrDI GCAATG 3 cut(s) 653, 1053, 1108
BsrFI RCCGGY 2 cut(s) 342, 579
BsrI ACTGG 2 cut(s) 285, 662
BssAI RCCGGY 2 cut(s) 342, 579
BssECI CCNNGG 4 cut(s) 87, 459, 751, 1184
BssMI GATC 5 cut(s) 79, 115, 145, 227, 921
BssT1I CCWWGG 1 cut(s) 751
Bst2UI CCWGG 2 cut(s) 89, 819
Bst4CI ACNGT 1 cut(s) 940
Bst6I CTCTTC 3 cut(s) 993, 1038, 1136
BstAFI CTTAAG 1 cut(s) 866
BstAPI GCANNNNNTGC 1 cut(s) 520
BstC8I GCNNGC 3 cut(s) 348, 456, 581
BstDEI CTNAG 7 cut(s) 33, 532, 540, 723, 858, 1014, 1148
BstDSI CCRYGG 1 cut(s) 459
BstENI CCTNNNNNAGG 1 cut(s) 505
BstF5I GGATG 2 cut(s) 148, 1125
BstHHI GCGC 1 cut(s) 514
BstKTI GATC 5 cut(s) 82, 118, 148, 230, 924
BstMAI GTCTC 4 cut(s) 58, 256, 630, 854
BstMBI GATC 5 cut(s) 79, 115, 145, 227, 921
BstNI CCWGG 2 cut(s) 89, 819
BstSCI CCNGG 3 cut(s) 87, 564, 817
BstSFI CTRYAG 1 cut(s) 357
BstV1I GCAGC 8 cut(s) 319, 526, 631, 702, 775, 877, 1045, 1097
BstX2I RGATCY 3 cut(s) 115, 227, 921
BstYI RGATCY 3 cut(s) 115, 227, 921
Bsu15I ATCGAT 3 cut(s) 70, 611, 681
BsuRI GGCC 4 cut(s) 5, 472, 1049, 1196
BsuTUI ATCGAT 3 cut(s) 70, 611, 681
BtgI CCRYGG 1 cut(s) 459
BtsCI GGATG 2 cut(s) 148, 1125
BtsIMutI CAGTG 2 cut(s) 669, 776
Cac8I GCNNGC 3 cut(s) 348, 456, 581
CfoI GCGC 1 cut(s) 514
Cfr10I RCCGGY 2 cut(s) 342, 579
Cfr13I GGNCC 5 cut(s) 470, 562, 603, 821, 1194
ClaI ATCGAT 3 cut(s) 70, 611, 681
Csp6I GTAC 2 cut(s) 213, 953
CspCI CAANNNNNGTGG 2 cut(s) 112, 147
CviQI GTAC 2 cut(s) 213, 953
DdeI CTNAG 7 cut(s) 33, 532, 540, 723, 858, 1014, 1148
DpnI GATC 5 cut(s) 81, 117, 147, 229, 923
DpnII GATC 5 cut(s) 79, 115, 145, 227, 921
DriI GACNNNNNGTC 1 cut(s) 535
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 993, 1038, 1136
Eam1105I GACNNNNNGTC 1 cut(s) 535
EarI CTCTTC 3 cut(s) 993, 1038, 1136
Eco130I CCWWGG 1 cut(s) 751
Eco31I GGTCTC 1 cut(s) 854
Eco47I GGWCC 3 cut(s) 562, 603, 821
EcoNI CCTNNNNNAGG 1 cut(s) 505
EcoO109I RGGNCCY 2 cut(s) 603, 1194
EcoRII CCWGG 2 cut(s) 87, 817
EcoT14I CCWWGG 1 cut(s) 751
EcoT22I ATGCAT 1 cut(s) 340
ErhI CCWWGG 1 cut(s) 751
FaiI YATR 4 cut(s) 340, 359, 504, 899
FalI AAGNNNNNCTT 2 cut(s) 161, 193
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 8 cut(s) 308, 515, 620, 716, 789, 891, 1059, 1086
FokI GGATG 2 cut(s) 155, 1132
Fsp4HI GCNGC 8 cut(s) 308, 515, 620, 716, 789, 891, 1059, 1086
FspBI CTAG 2 cut(s) 273, 876
GlaI GCGC 1 cut(s) 513
GluI GCNGC 8 cut(s) 308, 515, 620, 716, 789, 891, 1059, 1086
GsaI CCCAGC 1 cut(s) 628
GsuI CTGGAG 1 cut(s) 645
HaeIII GGCC 4 cut(s) 5, 472, 1049, 1196
HapII CCGG 5 cut(s) 343, 442, 565, 580, 956
HhaI GCGC 1 cut(s) 514
Hin6I GCGC 1 cut(s) 512
HinP1I GCGC 1 cut(s) 512
HpaII CCGG 5 cut(s) 343, 442, 565, 580, 956
HphI GGTGA 1 cut(s) 635
Hpy166II GTNNAC 1 cut(s) 953
Hpy188I TCNGA 5 cut(s) 79, 392, 424, 541, 1185
Hpy188III TCNNGA 3 cut(s) 178, 560, 1160
Hpy8I GTNNAC 1 cut(s) 953
HpyAV CCTTC 2 cut(s) 969, 1084
HpyCH4III ACNGT 1 cut(s) 940
HpyCH4IV ACGT 1 cut(s) 211
HpyCH4V TGCA 6 cut(s) 307, 338, 384, 633, 791, 914
HpyF3I CTNAG 7 cut(s) 33, 532, 540, 723, 858, 1014, 1148
HpySE526I ACGT 1 cut(s) 211
HspAI GCGC 1 cut(s) 512
KroI GCCGGC 1 cut(s) 579
KroNI GCCGGC 1 cut(s) 581
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 5 cut(s) 79, 115, 145, 227, 921
Lsp1109I GCAGC 8 cut(s) 319, 526, 631, 702, 775, 877, 1045, 1097
LweI GCATC 4 cut(s) 294, 325, 580, 901
MaeI CTAG 2 cut(s) 273, 876
MaeII ACGT 1 cut(s) 211
MaeIII GTNAC 3 cut(s) 93, 904, 981
MalI GATC 5 cut(s) 81, 117, 147, 229, 923
MboI GATC 5 cut(s) 79, 115, 145, 227, 921
MboII GAAGA 9 cut(s) 147, 250, 344, 426, 984, 1010, 1055, 1144, 1153
MfeI CAATTG 1 cut(s) 915
MflI RGATCY 3 cut(s) 115, 227, 921
MhlI GDGCHC 1 cut(s) 352
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 6 cut(s) 242, 286, 781, 915, 1007, 1111
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 4 cut(s) 101, 456, 545, 961
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 340
MroNI GCCGGC 1 cut(s) 579
MroXI GAANNNNTTC 2 cut(s) 484, 1111
MscI TGGCCA 1 cut(s) 5
MseI TTAA 5 cut(s) 401, 495, 771, 867, 1178
MslI CAYNNNNRTG 1 cut(s) 11
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 1 cut(s) 866
MspI CCGG 5 cut(s) 343, 442, 565, 580, 956
MspR9I CCNGG 3 cut(s) 89, 566, 819
MunI CAATTG 1 cut(s) 915
Mva1269I GAATGC 1 cut(s) 892
MvaI CCWGG 2 cut(s) 89, 819
NaeI GCCGGC 1 cut(s) 581
NciI CCSGG 1 cut(s) 566
NdeII GATC 5 cut(s) 79, 115, 145, 227, 921
NgoMIV GCCGGC 1 cut(s) 579
NlaIV GGNNCC 1 cut(s) 604
NmuCI GTSAC 3 cut(s) 93, 904, 981
NsiI ATGCAT 1 cut(s) 340
PctI GAATGC 1 cut(s) 892
PdiI GCCGGC 1 cut(s) 581
PdmI GAANNNNTTC 2 cut(s) 484, 1111
PfeI GAWTC 6 cut(s) 181, 393, 417, 436, 485, 668
PflFI GACNNNGTC 1 cut(s) 877
PkrI GCNGC 8 cut(s) 309, 516, 621, 717, 790, 892, 1060, 1087
PleI GAGTC 4 cut(s) 100, 455, 544, 961
PpsI GAGTC 4 cut(s) 100, 455, 544, 961
PpuMI RGGWCCY 1 cut(s) 603
Psp5II RGGWCCY 1 cut(s) 603
Psp6I CCWGG 2 cut(s) 87, 817
PspFI CCCAGC 1 cut(s) 624
PspGI CCWGG 2 cut(s) 87, 817
PspN4I GGNNCC 1 cut(s) 604
PspPI GGNCC 5 cut(s) 470, 562, 603, 821, 1194
PspPPI RGGWCCY 1 cut(s) 603
PsuI RGATCY 3 cut(s) 115, 227, 921
PsyI GACNNNGTC 1 cut(s) 877
RsaI GTAC 2 cut(s) 214, 954
RsaNI GTAC 2 cut(s) 213, 953
RseI CAYNNNNRTG 1 cut(s) 11
SaqAI TTAA 5 cut(s) 401, 495, 771, 867, 1178
SatI GCNGC 8 cut(s) 308, 515, 620, 716, 789, 891, 1059, 1086
Sau3AI GATC 5 cut(s) 79, 115, 145, 227, 921
Sau96I GGNCC 5 cut(s) 470, 562, 603, 821, 1194
SchI GAGTC 4 cut(s) 101, 456, 545, 961
ScrFI CCNGG 3 cut(s) 89, 566, 819
SduI GDGCHC 1 cut(s) 352
SetI ASST 3 cut(s) 214, 813, 881
SfaNI GCATC 4 cut(s) 294, 325, 580, 901
SfcI CTRYAG 1 cut(s) 357
SinI GGWCC 3 cut(s) 562, 603, 821
SmiMI CAYNNNNRTG 1 cut(s) 11
SmlI CTYRAG 4 cut(s) 231, 524, 866, 986
SmoI CTYRAG 4 cut(s) 231, 524, 866, 986
Sse9I AATT 6 cut(s) 242, 286, 781, 915, 1007, 1111
SsiI CCGC 1 cut(s) 692
SspMI CTAG 2 cut(s) 273, 876
StyD4I CCNGG 3 cut(s) 87, 564, 817
StyI CCWWGG 1 cut(s) 751
TaaI ACNGT 1 cut(s) 940
TaiI ACGT 1 cut(s) 214
TaqI TCGA 5 cut(s) 70, 611, 681, 806, 970
TasI AATT 6 cut(s) 242, 286, 781, 915, 1007, 1111
TfiI GAWTC 6 cut(s) 181, 393, 417, 436, 485, 668
Tru1I TTAA 5 cut(s) 401, 495, 771, 867, 1178
Tru9I TTAA 5 cut(s) 401, 495, 771, 867, 1178
TscAI CASTG 2 cut(s) 669, 783
TseFI GTSAC 3 cut(s) 93, 904, 981
TseI GCWGC 8 cut(s) 307, 514, 619, 715, 788, 890, 1058, 1085
Tsp45I GTSAC 3 cut(s) 93, 904, 981
TspDTI ATGAA 6 cut(s) 29, 419, 519, 563, 1011, 1095
TspRI CASTG 2 cut(s) 669, 783
Tth111I GACNNNGTC 1 cut(s) 877
Vha464I CTTAAG 1 cut(s) 866
VpaK11BI GGWCC 3 cut(s) 562, 603, 821
XagI CCTNNNNNAGG 1 cut(s) 505
XapI RAATTY 2 cut(s) 242, 286
XcmI CCANNNNNNNNNTGG 1 cut(s) 277
XmnI GAANNNNTTC 2 cut(s) 484, 1111
XspI CTAG 2 cut(s) 273, 876
Zsp2I ATGCAT 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.