pycom15g21420

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0011032
Physical Location & Seq
Reverse (-)
15386897 .. 15388666
1770 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g21420.3

Sequence Viewer

Length: 1302 bp
ATGTTGCAAGATATGTGGAATGCTCCGCCTGGTTTCAGACCCACCAAGTCTGCTCCTTCCTCTCCGGCCAAGCCTCTCGGAATTTCGAGGACTCATTCCGTCGGAACTGAGTCATTTCACGTAACTCACAAAGTTCCGGTAGGCGACACTCCTTATGTCAGAGCCAAGAATGTTCAGCTGGTGGAGAAGGATCCGGAGAAGGCAATCCCGCTGTTTTGGGCAGCCATTAATTCTGGGGACAGAGTGGATAGTGCTTTGAAGGACATGGCGATTGTGATGAAGCAACAGAGCCGGGCAGAAGAAGCGATTGAGGCCATCAAGTCATTGAGACACCGGTGTTCGGATCAAGCTCAGGAGTCTCTTGACAACATTCTTCTGGATCTTTACAAGGGGAACTTGGGTTGGGCTTTGATGCAGCAGAACAACTACATTGAAGCAGAAGATGCTTATCGCCGAGCACTGACAATTGCGCCGGATAACAACAAGATGTGCAACCTCGGAATCTGCCTAATGAAGCAAGGAAGAATCTCTGAGGCTAAAGAGAATCTCCGCCGCGTTAAGCCAGCAGTTGCAGATGGTCCAAGAGGGACAGATTCCCATCTCAAGGCCTATGAGAGGGCTCAGCAGATGCTCAAAGATCTTGAGTCCGAGATGATGAACAAGGGCGGGGATCGCGTTGAGCAGAGCAGGCTTTTTGATGCTTTTTTGGGTTCGTCATCGATTTGGCAGCCTCAGCCTTGCAGAGACCACCACCACACAAGTTTGCCAACAACAACAGATTCTGTGAAATCTCAACCCGATGAGTTTGCTGATGAGAATATCAATTCCAACTTTTTCGCAAACCCGAAGATGGGACTTCCTCAGCATAAAACTATCAATCAAGTCCCTCAACCAAACTCACTTAATGTTGCTGCAAAGCCTTACTTCTCAAAGTCCATTTCAGCCCGCCCAACCGCCACTCAATTTGCTGAGACCCTTAAGAGGACAAGGTCCGGGAATGCTGCGACTTCAATGAGAGTGACAGAGGCGATTGAGATCCCTAAACCTGTTGTGGATTTGGTCGTACCAGAGAACAAGACCAGAAGAAGGCTCTCTCTTGAAGAAACAGGGAATGAGTTGACAGGATTGTTGCCCGACAACAAGGACTTCGAAGAGGCTATCATCGCCGCGGTCATTGACCCGAAAAATGAGGCTGGGAAGGCGGTTGGAATCAGCAACTGTTCCGGGATGTTTCCGAAGAAGGTTGAGAAGAGGCTCAGGGTTTTTCAGGATATTACACTGTCTCTAAGTCCAAGGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

434

Amino Acids

48.06

Weight (kDa)

8.78

Isoelectric Point (pI)

51.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011032)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51280
fragaria_vesca FvH4_1g11500 FvH4_1g11500
malus_domestica MD02G1127900.v1.1 MD15G1243100.v1.1
prunus_persica Prupe.7G171000_v2.0.a1
pyrus_communis pycom02g10000 pycom15g21420
rosa_chinensis RchiOBHm_Chr2g0099121
rosa_laevigata RLG00000016850
rosa_multiflora Rmu_sc0009113.1_g000006 Rmu_sc0012098.1_g000002 Rmu_sc0034643.1_g000001
rosa_roxburghii Rroxscaffold_2G00143420
rosa_rugosa Rorug02G0076900
rosa_samantha Rh2AG126000 Rh2BG129300 Rh2CG130300 Rh2DG130700
rosa_wichuraiana Rw2G009710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 555, 675, 1169
AccIII TCCGGA 1 cut(s) 193
AclWI GGATC 6 cut(s) 185, 198, 351, 387, 678, 1030
AcoI YGGCCR 1 cut(s) 66
AcsI RAATTY 1 cut(s) 81
AfaI GTAC 1 cut(s) 1065
AfiI CCNNNNNNNGG 7 cut(s) 340, 604, 615, 850, 851, 981, 1086
AflII CTTAAG 1 cut(s) 977
AgeI ACCGGT 1 cut(s) 333
AgsI TTSAA 4 cut(s) 259, 434, 1011, 1100
AjnI CCWGG 1 cut(s) 28
AluBI AGCT 2 cut(s) 178, 350
AluI AGCT 2 cut(s) 178, 350
Alw21I GWGCWC 1 cut(s) 460
Alw26I GTCTC 5 cut(s) 322, 363, 738, 965, 1287
AlwI GGATC 6 cut(s) 185, 198, 351, 387, 678, 1030
AlwNI CAGNNNCTG 2 cut(s) 782, 1218
Aor13HI TCCGGA 1 cut(s) 193
AoxI GGCC 4 cut(s) 66, 312, 606, 1296
ApeKI GCWGC 5 cut(s) 221, 415, 727, 911, 1001
ApoI RAATTY 1 cut(s) 81
AseI ATTAAT 1 cut(s) 228
AsiGI ACCGGT 1 cut(s) 333
AspLEI GCGC 1 cut(s) 472
AspS9I GGNCC 3 cut(s) 578, 990, 1296
AsuC2I CCSGG 3 cut(s) 293, 994, 1225
AsuII TTCGAA 1 cut(s) 1149
AvaII GGWCC 2 cut(s) 578, 990
BamHI GGATCC 1 cut(s) 190
BanII GRGCYC 1 cut(s) 622
Bbv12I GWGCWC 1 cut(s) 460
BbvCI CCTCAGC 2 cut(s) 732, 861
BbvI GCAGC 5 cut(s) 233, 427, 739, 898, 988
BccI CCATC 4 cut(s) 323, 569, 606, 844
BcgI CGANNNNNNTGC 2 cut(s) 788, 822
BciT130I CCWGG 1 cut(s) 30
BcnI CCSGG 3 cut(s) 293, 994, 1225
BcoDI GTCTC 5 cut(s) 322, 363, 738, 965, 1287
BfrI CTTAAG 1 cut(s) 977
BglII AGATCT 1 cut(s) 637
BisI GCNGC 7 cut(s) 222, 416, 553, 728, 912, 1002, 1167
BlpI GCTNAGC 1 cut(s) 621
BlsI GCNGC 7 cut(s) 223, 417, 554, 729, 913, 1003, 1168
Bme1390I CCNGG 4 cut(s) 30, 293, 994, 1225
Bme18I GGWCC 2 cut(s) 578, 990
BmgT120I GGNCC 3 cut(s) 578, 990, 1296
BmiI GGNNCC 1 cut(s) 192
BmrFI CCNGG 4 cut(s) 30, 293, 994, 1225
BmsI GCATC 4 cut(s) 402, 433, 618, 688
Bpu10I CCTNAGC 4 cut(s) 351, 732, 861, 1256
Bpu1102I GCTNAGC 1 cut(s) 621
Bpu14I TTCGAA 1 cut(s) 1149
BpuEI CTTGAG 2 cut(s) 587, 662
BpuMI CCSGG 3 cut(s) 293, 994, 1225
Bsa29I ATCGAT 1 cut(s) 719
BsaAI YACGTR 1 cut(s) 121
BsaBI GATNNNNATC 3 cut(s) 447, 597, 1034
BsaI GGTCTC 2 cut(s) 738, 965
BsaJI CCNNGG 3 cut(s) 496, 1167, 1292
BsaWI WCCGGW 3 cut(s) 136, 193, 333
Bsc4I CCNNNNNNNGG 7 cut(s) 340, 604, 615, 850, 851, 981, 1086
Bse118I RCCGGY 1 cut(s) 333
Bse8I GATNNNNATC 3 cut(s) 447, 597, 1034
BseAI TCCGGA 1 cut(s) 193
BseBI CCWGG 1 cut(s) 30
BseCI ATCGAT 1 cut(s) 719
BseDI CCNNGG 3 cut(s) 496, 1167, 1292
BseGI GGATG 1 cut(s) 1233
BseJI GATNNNNATC 3 cut(s) 447, 597, 1034
BseLI CCNNNNNNNGG 7 cut(s) 340, 604, 615, 850, 851, 981, 1086
BseMII CTCAG 8 cut(s) 99, 365, 522, 635, 746, 875, 960, 1270
BseXI GCAGC 5 cut(s) 233, 427, 739, 898, 988
BseYI CCCAGC 1 cut(s) 1193
Bsh1236I CGCG 3 cut(s) 555, 675, 1169
BshFI GGCC 4 cut(s) 68, 314, 608, 1298
BshTI ACCGGT 1 cut(s) 333
BshVI ATCGAT 1 cut(s) 719
BsiHKAI GWGCWC 1 cut(s) 460
BsiSI CCGG 8 cut(s) 65, 137, 194, 292, 334, 473, 993, 1224
BslFI GGGAC 4 cut(s) 251, 601, 867, 869
BslI CCNNNNNNNGG 7 cut(s) 340, 604, 615, 850, 851, 981, 1086
BsmAI GTCTC 5 cut(s) 322, 363, 738, 965, 1287
BsmFI GGGAC 4 cut(s) 251, 601, 867, 869
BsmI GAATGC 2 cut(s) 25, 1003
BsnI GGCC 4 cut(s) 68, 314, 608, 1298
Bso31I GGTCTC 2 cut(s) 738, 965
Bsp119I TTCGAA 1 cut(s) 1149
Bsp1286I GDGCHC 2 cut(s) 460, 622
Bsp13I TCCGGA 1 cut(s) 193
Bsp143I GATC 6 cut(s) 190, 343, 379, 637, 670, 1035
Bsp1720I GCTNAGC 1 cut(s) 621
BspANI GGCC 4 cut(s) 68, 314, 608, 1298
BspCNI CTCAG 8 cut(s) 100, 364, 523, 634, 745, 874, 961, 1269
BspDI ATCGAT 1 cut(s) 719
BspEI TCCGGA 1 cut(s) 193
BspFNI CGCG 3 cut(s) 555, 675, 1169
BspLI GGNNCC 1 cut(s) 192
BspPI GGATC 6 cut(s) 185, 198, 351, 387, 678, 1030
BspT104I TTCGAA 1 cut(s) 1149
BspTI CTTAAG 1 cut(s) 977
BspTNI GGTCTC 2 cut(s) 738, 965
BsrFI RCCGGY 1 cut(s) 333
BssAI RCCGGY 1 cut(s) 333
BssECI CCNNGG 3 cut(s) 496, 1167, 1292
BssMI GATC 6 cut(s) 190, 343, 379, 637, 670, 1035
BssT1I CCWWGG 1 cut(s) 1292
Bst2UI CCWGG 1 cut(s) 30
Bst4CI ACNGT 2 cut(s) 1220, 1281
Bst6I CTCTTC 2 cut(s) 1146, 1244
BstAFI CTTAAG 1 cut(s) 977
BstAPI GCANNNNNTGC 1 cut(s) 443
BstBAI YACGTR 1 cut(s) 121
BstBI TTCGAA 1 cut(s) 1149
BstC8I GCNNGC 3 cut(s) 564, 689, 946
BstDEI CTNAG 9 cut(s) 108, 351, 531, 621, 732, 861, 969, 1256, 1286
BstDSI CCRYGG 1 cut(s) 1167
BstENI CCTNNNNNAGG 1 cut(s) 613
BstF5I GGATG 1 cut(s) 1233
BstFNI CGCG 3 cut(s) 555, 675, 1169
BstHHI GCGC 1 cut(s) 472
BstKTI GATC 6 cut(s) 193, 346, 382, 640, 673, 1038
BstMAI GTCTC 5 cut(s) 322, 363, 738, 965, 1287
BstMBI GATC 6 cut(s) 190, 343, 379, 637, 670, 1035
BstMWI GCNNNNNNNGC 8 cut(s) 302, 311, 443, 672, 688, 733, 1163, 1199
BstNI CCWGG 1 cut(s) 30
BstSCI CCNGG 4 cut(s) 28, 291, 992, 1223
BstUI CGCG 3 cut(s) 555, 675, 1169
BstV1I GCAGC 5 cut(s) 233, 427, 739, 898, 988
BstX2I RGATCY 4 cut(s) 190, 379, 637, 1035
BstYI RGATCY 4 cut(s) 190, 379, 637, 1035
Bsu15I ATCGAT 1 cut(s) 719
BsuRI GGCC 4 cut(s) 68, 314, 608, 1298
BsuTUI ATCGAT 1 cut(s) 719
BtgI CCRYGG 1 cut(s) 1167
BtgZI GCGATG 1 cut(s) 1147
BtsCI GGATG 1 cut(s) 1233
BtsIMutI CAGTG 2 cut(s) 458, 1277
Cac8I GCNNGC 3 cut(s) 564, 689, 946
CaiI CAGNNNCTG 2 cut(s) 782, 1218
CfoI GCGC 1 cut(s) 472
Cfr10I RCCGGY 1 cut(s) 333
Cfr13I GGNCC 3 cut(s) 578, 990, 1296
Cfr42I CCGCGG 1 cut(s) 1170
ClaI ATCGAT 1 cut(s) 719
Csp6I GTAC 1 cut(s) 1064
CspAI ACCGGT 1 cut(s) 333
CspCI CAANNNNNGTGG 3 cut(s) 31, 946, 981
CviAII CATG 1 cut(s) 265
CviQI GTAC 1 cut(s) 1064
DdeI CTNAG 9 cut(s) 108, 351, 531, 621, 732, 861, 969, 1256, 1286
DpnI GATC 6 cut(s) 192, 345, 381, 639, 672, 1037
DpnII GATC 6 cut(s) 190, 343, 379, 637, 670, 1035
EaeI YGGCCR 1 cut(s) 66
Eam1104I CTCTTC 2 cut(s) 1146, 1244
EarI CTCTTC 2 cut(s) 1146, 1244
EciI GGCGGA 2 cut(s) 15, 539
Eco130I CCWWGG 1 cut(s) 1292
Eco147I AGGCCT 1 cut(s) 608
Eco24I GRGCYC 1 cut(s) 622
Eco31I GGTCTC 2 cut(s) 738, 965
Eco47I GGWCC 2 cut(s) 578, 990
EcoNI CCTNNNNNAGG 1 cut(s) 613
EcoO109I RGGNCCY 1 cut(s) 1296
EcoRII CCWGG 1 cut(s) 28
EcoT14I CCWWGG 1 cut(s) 1292
EcoT38I GRGCYC 1 cut(s) 622
ErhI CCWWGG 1 cut(s) 1292
FaeI CATG 1 cut(s) 268
FaiI YATR 5 cut(s) 14, 156, 266, 612, 867
FalI AAGNNNNNCTT 4 cut(s) 380, 412, 908, 940
FaqI GGGAC 4 cut(s) 251, 601, 867, 869
FatI CATG 1 cut(s) 264
FauI CCCGC 3 cut(s) 216, 659, 953
Fnu4HI GCNGC 7 cut(s) 222, 416, 553, 728, 912, 1002, 1167
FokI GGATG 1 cut(s) 1240
FriOI GRGCYC 1 cut(s) 622
Fsp4HI GCNGC 7 cut(s) 222, 416, 553, 728, 912, 1002, 1167
GlaI GCGC 1 cut(s) 471
GluI GCNGC 7 cut(s) 222, 416, 553, 728, 912, 1002, 1167
GsaI CCCAGC 1 cut(s) 1197
HaeIII GGCC 4 cut(s) 68, 314, 608, 1298
HapII CCGG 8 cut(s) 65, 137, 194, 292, 334, 473, 993, 1224
HhaI GCGC 1 cut(s) 472
Hin1II CATG 1 cut(s) 268
Hin6I GCGC 1 cut(s) 470
HinP1I GCGC 1 cut(s) 470
HincII GTYRAC 1 cut(s) 1119
HindII GTYRAC 1 cut(s) 1119
HpaII CCGG 8 cut(s) 65, 137, 194, 292, 334, 473, 993, 1224
Hpy166II GTNNAC 1 cut(s) 1119
Hpy188I TCNGA 9 cut(s) 38, 80, 104, 161, 343, 500, 532, 649, 1236
Hpy188III TCNNGA 7 cut(s) 194, 353, 362, 377, 641, 1097, 1268
Hpy8I GTNNAC 1 cut(s) 1119
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 7 cut(s) 66, 181, 193, 253, 1080, 1192, 1234
HpyCH4III ACNGT 2 cut(s) 1220, 1281
HpyCH4IV ACGT 1 cut(s) 120
HpyCH4V TGCA 6 cut(s) 7, 415, 492, 572, 741, 914
HpyF10VI GCNNNNNNNGC 8 cut(s) 302, 311, 443, 672, 688, 733, 1163, 1199
HpyF3I CTNAG 9 cut(s) 108, 351, 531, 621, 732, 861, 969, 1256, 1286
HpySE526I ACGT 1 cut(s) 120
Hsp92II CATG 1 cut(s) 268
HspAI GCGC 1 cut(s) 470
Kpn2I TCCGGA 1 cut(s) 193
KspI CCGCGG 1 cut(s) 1170
Kzo9I GATC 6 cut(s) 190, 343, 379, 637, 670, 1035
LmnI GCTCC 2 cut(s) 28, 58
Lsp1109I GCAGC 5 cut(s) 233, 427, 739, 898, 988
LweI GCATC 4 cut(s) 402, 433, 618, 688
MaeII ACGT 1 cut(s) 120
MaeIII GTNAC 2 cut(s) 121, 1018
MalI GATC 6 cut(s) 192, 345, 381, 639, 672, 1037
MboI GATC 6 cut(s) 190, 343, 379, 637, 670, 1035
MfeI CAATTG 1 cut(s) 465
MflI RGATCY 4 cut(s) 190, 379, 637, 1035
MhlI GDGCHC 2 cut(s) 460, 622
MluCI AATT 5 cut(s) 81, 229, 465, 823, 962
MlyI GAGTC 4 cut(s) 85, 119, 365, 653
MmeI TCCRAC 3 cut(s) 82, 852, 1186
MroI TCCGGA 1 cut(s) 193
MseI TTAA 4 cut(s) 228, 558, 903, 978
MspA1I CMGCKG 3 cut(s) 178, 211, 1169
MspCI CTTAAG 1 cut(s) 977
MspI CCGG 8 cut(s) 65, 137, 194, 292, 334, 473, 993, 1224
MspR9I CCNGG 4 cut(s) 30, 293, 994, 1225
MunI CAATTG 1 cut(s) 465
Mva1269I GAATGC 2 cut(s) 25, 1003
MvaI CCWGG 1 cut(s) 30
MvnI CGCG 3 cut(s) 555, 675, 1169
MwoI GCNNNNNNNGC 8 cut(s) 302, 311, 443, 672, 688, 733, 1163, 1199
NciI CCSGG 3 cut(s) 293, 994, 1225
NdeII GATC 6 cut(s) 190, 343, 379, 637, 670, 1035
NlaIII CATG 1 cut(s) 268
NlaIV GGNNCC 1 cut(s) 192
NmeAIII GCCGAG 1 cut(s) 479
NmuCI GTSAC 1 cut(s) 1018
NspV TTCGAA 1 cut(s) 1149
PceI AGGCCT 1 cut(s) 608
PctI GAATGC 2 cut(s) 25, 1003
PfeI GAWTC 6 cut(s) 501, 525, 544, 593, 779, 1209
PflFI GACNNNGTC 1 cut(s) 988
PfoI TCCNGGA 2 cut(s) 992, 1223
PinAI ACCGGT 1 cut(s) 333
PkrI GCNGC 7 cut(s) 223, 417, 554, 729, 913, 1003, 1168
PleI GAGTC 4 cut(s) 85, 118, 364, 652
PpsI GAGTC 4 cut(s) 85, 118, 364, 652
Ppu21I YACGTR 1 cut(s) 121
PshBI ATTAAT 1 cut(s) 228
Psp6I CCWGG 1 cut(s) 28
PspFI CCCAGC 1 cut(s) 1193
PspGI CCWGG 1 cut(s) 28
PspN4I GGNNCC 1 cut(s) 192
PspPI GGNCC 3 cut(s) 578, 990, 1296
PstNI CAGNNNCTG 2 cut(s) 782, 1218
PsuI RGATCY 4 cut(s) 190, 379, 637, 1035
PsyI GACNNNGTC 1 cut(s) 988
PvuII CAGCTG 1 cut(s) 178
RsaI GTAC 1 cut(s) 1065
RsaNI GTAC 1 cut(s) 1064
SacII CCGCGG 1 cut(s) 1170
SaqAI TTAA 4 cut(s) 228, 558, 903, 978
SatI GCNGC 7 cut(s) 222, 416, 553, 728, 912, 1002, 1167
Sau3AI GATC 6 cut(s) 190, 343, 379, 637, 670, 1035
Sau96I GGNCC 3 cut(s) 578, 990, 1296
SchI GAGTC 4 cut(s) 85, 119, 365, 653
ScrFI CCNGG 4 cut(s) 30, 293, 994, 1225
SduI GDGCHC 2 cut(s) 460, 622
SetI ASST 7 cut(s) 123, 180, 352, 498, 992, 1048, 1245
SfaNI GCATC 4 cut(s) 402, 433, 618, 688
Sfr303I CCGCGG 1 cut(s) 1170
SfuI TTCGAA 1 cut(s) 1149
SgrAI CRCCGGYG 1 cut(s) 333
SgrBI CCGCGG 1 cut(s) 1170
SinI GGWCC 2 cut(s) 578, 990
SmlI CTYRAG 3 cut(s) 602, 641, 977
SmoI CTYRAG 3 cut(s) 602, 641, 977
Sse9I AATT 5 cut(s) 81, 229, 465, 823, 962
SseBI AGGCCT 1 cut(s) 608
StuI AGGCCT 1 cut(s) 608
StyD4I CCNGG 4 cut(s) 28, 291, 992, 1223
StyI CCWWGG 1 cut(s) 1292
TaaI ACNGT 2 cut(s) 1220, 1281
TaiI ACGT 1 cut(s) 123
TaqI TCGA 3 cut(s) 86, 719, 1149
TasI AATT 5 cut(s) 81, 229, 465, 823, 962
TauI GCSGC 2 cut(s) 555, 1169
TfiI GAWTC 6 cut(s) 501, 525, 544, 593, 779, 1209
Tru1I TTAA 4 cut(s) 228, 558, 903, 978
Tru9I TTAA 4 cut(s) 228, 558, 903, 978
TscAI CASTG 2 cut(s) 465, 1284
TseFI GTSAC 1 cut(s) 1018
TseI GCWGC 5 cut(s) 221, 415, 727, 911, 1001
Tsp45I GTSAC 1 cut(s) 1018
TspDTI ATGAA 3 cut(s) 293, 527, 671
TspGWI ACGGA 1 cut(s) 88
TspRI CASTG 2 cut(s) 465, 1284
Tth111I GACNNNGTC 1 cut(s) 988
Vha464I CTTAAG 1 cut(s) 977
VpaK11BI GGWCC 2 cut(s) 578, 990
VspI ATTAAT 1 cut(s) 228
XagI CCTNNNNNAGG 1 cut(s) 613
XapI RAATTY 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.